Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99959 * 2 1 4 4 C 1.50701 * 109.47081 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99971 * 4.79288 * 4 3 2 6 6 C 1.38217 * 120.00120 * 179.97438 * 5 4 3 7 7 C 1.38262 * 119.99572 * 0.02562 * 6 5 4 8 8 C 1.38212 * 120.00308 * 359.69655 * 7 6 5 9 9 C 1.38213 * 120.00309 * 184.77223 * 4 3 2 10 10 S 1.76208 * 119.99468 * 0.02562 * 9 4 3 11 11 O 1.42099 * 106.39630 * 180.02562 * 10 9 4 12 12 O 1.42097 * 106.40292 * 47.09717 * 10 9 4 13 13 N 1.65596 * 107.21669 * 293.55261 * 10 9 4 14 14 C 1.46496 * 120.00198 * 278.02010 * 13 10 9 15 15 C 1.50698 * 109.47075 * 94.19895 * 14 13 10 16 16 H 1.08001 * 120.00335 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00150 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00032 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00344 * 179.97438 * 17 15 14 20 20 H 1.48513 * 109.46775 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47226 * 120.00018 * 19 17 15 22 22 H 1.48496 * 109.47468 * 240.00390 * 19 17 15 23 23 C 1.46507 * 119.99895 * 97.74750 * 13 10 9 24 24 C 1.53001 * 109.46990 * 108.64216 * 23 13 10 25 25 C 1.53002 * 109.46754 * 174.74899 * 24 23 13 26 26 C 1.52997 * 109.47490 * 294.74775 * 24 23 13 27 27 H 1.08999 * 109.47090 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47477 * 300.00153 * 1 2 3 29 29 H 1.09004 * 109.46426 * 60.00510 * 1 2 3 30 30 H 1.08997 * 109.46906 * 59.99785 * 3 2 1 31 31 H 1.09001 * 109.47040 * 299.99094 * 3 2 1 32 32 H 1.07996 * 120.00057 * 0.02562 * 5 4 3 33 33 H 1.07996 * 120.00392 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.99317 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.00048 * 180.29484 * 8 7 6 36 36 H 1.09004 * 109.47090 * 214.19577 * 14 13 10 37 37 H 1.08998 * 109.47358 * 334.19989 * 14 13 10 38 38 H 0.96995 * 120.00073 * 179.97438 * 18 17 15 39 39 H 1.08993 * 109.46894 * 228.64632 * 23 13 10 40 40 H 1.09000 * 109.46620 * 348.64691 * 23 13 10 41 41 H 1.09004 * 109.46754 * 54.75266 * 24 23 13 42 42 H 1.08992 * 109.47162 * 60.00249 * 25 24 23 43 43 H 1.08999 * 109.46791 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47255 * 299.99672 * 25 24 23 45 45 H 1.08997 * 109.46938 * 185.29040 * 26 24 23 46 46 H 1.08999 * 109.47145 * 305.29296 * 26 24 23 47 47 H 1.09006 * 109.46883 * 65.28972 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1075 -0.0576 -0.0989 6 6 5.4853 -0.1667 -0.0989 7 6 6.2686 0.9683 0.0013 8 6 5.6739 2.2124 0.0950 9 6 4.2956 2.3210 0.1003 10 16 3.5373 3.9064 0.2274 11 8 4.5951 4.8514 0.3125 12 8 2.5204 3.7871 1.2127 13 7 2.7654 4.1971 -1.2086 14 6 3.5209 4.7035 -2.3570 15 6 3.9584 3.5479 -3.2196 16 1 3.7000 2.5372 -2.9401 17 6 4.6888 3.7808 -4.3657 18 7 5.0040 5.0114 -4.7058 19 14 5.2317 2.3483 -5.4346 20 1 4.7536 1.0756 -4.8368 21 1 4.6585 2.5013 -6.7958 22 1 6.7140 2.3290 -5.5209 23 6 1.3280 3.9420 -1.3323 24 6 0.5791 5.2736 -1.4148 25 6 -0.9052 5.0086 -1.6751 26 6 0.7381 6.0309 -0.0949 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.6885 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.4956 -0.9440 -0.1776 33 1 5.9501 -1.1384 -0.1771 34 1 7.3452 0.8829 0.0017 35 1 6.2858 3.0992 0.1685 36 1 2.8895 5.3737 -2.9404 37 1 4.3981 5.2460 -2.0042 38 1 5.5181 5.1753 -5.5118 39 1 1.1384 3.3619 -2.2353 40 1 0.9820 3.3838 -0.4624 41 1 0.9895 5.8715 -2.2286 42 1 -1.3156 4.4107 -0.8614 43 1 -1.4387 5.9572 -1.7343 44 1 -1.0185 4.4691 -2.6154 45 1 0.1288 6.9343 -0.1188 46 1 0.4142 5.3958 0.7296 47 1 1.7846 6.3020 0.0446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778620980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = -95.857641 kcal Electronic energy + Delta-G solvation = -30307.002809 eV Core-core repulsion = 26389.084966 eV Total energy + Delta-G solvation = -3917.917843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.31751 -37.66757 -37.11869 -36.64686 -35.31424 -33.81391 -32.26449 -31.91338 -30.89269 -27.66739 -27.18457 -26.87565 -25.53424 -24.88790 -22.99658 -22.40237 -21.42358 -19.78341 -18.41795 -17.57511 -17.05804 -16.44269 -16.32702 -15.92124 -15.87764 -15.44073 -14.70568 -14.62456 -14.48837 -14.25545 -14.05286 -13.84991 -13.71814 -13.19664 -12.67537 -12.53222 -12.38753 -12.25333 -12.08420 -12.01491 -11.89767 -11.77400 -11.53920 -11.30582 -11.23767 -11.17487 -11.11579 -10.98966 -10.75231 -10.67638 -10.51785 -10.31958 -10.13906 -9.98669 -9.81950 -9.69284 -9.01534 -8.51117 -8.49520 -8.07165 -6.12951 -4.18782 0.92827 1.21033 1.59535 3.23021 3.31701 3.35424 3.49955 3.67352 3.83780 4.27475 4.36538 4.76260 4.86698 5.09867 5.13358 5.21432 5.21995 5.24337 5.28391 5.32858 5.35090 5.47250 5.55559 5.58443 5.61395 5.62998 5.80900 5.87983 5.98681 5.99632 6.09960 6.10334 6.14476 6.21570 6.32417 6.41551 6.44633 6.49320 6.58947 6.61141 6.74525 7.09140 7.16127 7.29498 7.37675 7.57067 7.84189 8.11905 8.86344 9.47778 10.95012 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007793 B = 0.007025 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3591.890793 B = 3984.677626 C = 5276.657609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.384 6.384 3 C 0.050 3.950 4 C 0.014 3.986 5 C -0.124 4.124 6 C -0.074 4.074 7 C -0.144 4.144 8 C -0.010 4.010 9 C -0.655 4.655 10 S 2.686 3.314 11 O -0.959 6.959 12 O -0.976 6.976 13 N -0.979 5.979 14 C 0.246 3.754 15 C -0.538 4.538 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.888 3.112 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.122 3.878 24 C -0.112 4.112 25 C -0.143 4.143 26 C -0.149 4.149 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.142 0.858 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.264 0.736 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 -6.801 8.583 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C -0.026 4.026 4 C 0.013 3.987 5 C -0.143 4.143 6 C -0.092 4.092 7 C -0.163 4.163 8 C -0.030 4.030 9 C -0.741 4.741 10 S 2.777 3.223 11 O -0.949 6.949 12 O -0.967 6.967 13 N -0.818 5.818 14 C 0.124 3.876 15 C -0.578 4.578 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.716 3.284 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.004 4.004 24 C -0.133 4.133 25 C -0.201 4.201 26 C -0.207 4.207 27 H 0.104 0.896 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.231 -6.312 9.151 13.262 hybrid contribution 0.554 -1.304 -1.315 1.933 sum -6.678 -7.616 7.836 12.806 Atomic orbital electron populations 1.22782 0.80686 1.02744 1.00527 1.87794 1.19904 1.26913 1.95662 1.22398 0.90242 0.86328 1.03635 1.19148 0.93347 0.93005 0.93241 1.21001 0.94639 0.97519 1.01130 1.21373 0.93944 0.98571 0.95286 1.21229 1.00080 0.92639 1.02336 1.20866 0.92406 0.98740 0.90941 1.30767 1.04561 1.21526 1.17212 1.02011 0.73283 0.73900 0.73135 1.93536 1.56700 1.58621 1.86076 1.93483 1.57869 1.87361 1.57944 1.57333 1.15284 1.79044 1.30125 1.19245 0.91450 0.94926 0.81979 1.21577 1.34621 0.93636 1.07930 0.91968 1.24896 0.95662 0.95584 0.97467 1.69934 1.38593 1.18984 1.25228 0.86584 0.78568 0.82864 0.80376 1.19620 1.20914 1.20855 1.21496 0.79868 0.96737 1.02264 1.21479 0.95251 0.97576 0.98967 1.21768 0.95465 1.01443 1.01383 1.21872 1.01444 1.00003 0.97348 0.89561 0.93707 0.93607 0.88377 0.89596 0.84692 0.85709 0.85408 0.84013 0.93689 0.93156 0.92652 0.90491 0.90453 0.89900 0.92904 0.92722 0.92533 0.92901 0.91951 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.60 9.20 -35.23 -0.32 -5.92 16 3 C 0.05 0.80 4.06 36.01 0.15 0.95 16 4 C 0.01 0.25 5.87 -104.62 -0.61 -0.36 16 5 C -0.12 -2.01 9.38 -39.58 -0.37 -2.39 16 6 C -0.07 -1.09 10.05 -39.58 -0.40 -1.48 16 7 C -0.14 -2.25 10.05 -39.58 -0.40 -2.64 16 8 C -0.01 -0.19 9.55 -39.58 -0.38 -0.57 16 9 C -0.66 -12.59 5.91 -39.58 -0.23 -12.83 16 10 S 2.69 53.92 4.97 -107.50 -0.53 53.38 16 11 O -0.96 -21.83 15.72 -57.17 -0.90 -22.73 16 12 O -0.98 -18.75 13.69 -57.17 -0.78 -19.54 16 13 N -0.98 -19.57 2.32 -115.66 -0.27 -19.83 16 14 C 0.25 5.89 5.35 -5.20 -0.03 5.86 16 15 C -0.54 -13.94 9.39 -34.44 -0.32 -14.27 16 16 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -25.05 13.29 55.43 0.74 -24.32 16 19 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.12 2.03 3.07 -4.04 -0.01 2.02 16 24 C -0.11 -1.69 2.99 -90.62 -0.27 -1.96 16 25 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 26 C -0.15 -2.24 8.67 37.16 0.32 -1.92 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 1.56 5.94 -51.93 -0.31 1.25 16 31 H 0.09 1.37 4.75 -51.93 -0.25 1.12 16 32 H 0.14 1.97 7.02 -52.49 -0.37 1.60 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.14 2.51 7.33 -52.49 -0.38 2.13 16 36 H 0.05 1.11 7.01 -51.93 -0.36 0.74 16 37 H 0.05 1.33 7.05 -51.93 -0.37 0.97 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.08 1.26 7.97 -51.93 -0.41 0.85 16 40 H 0.08 1.16 4.79 -51.93 -0.25 0.91 16 41 H 0.08 1.37 7.06 -51.93 -0.37 1.00 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.91 8.03 -51.93 -0.42 0.49 16 47 H 0.05 0.81 7.79 -51.93 -0.40 0.41 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -31.06 384.02 -9.75 -40.81 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.24 Total: 4.24 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -1.20 Total: -27.82 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.47 Total: -44.15 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -2.01 Total: -48.19 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 53.92 SS G_CDS: -0.53 Total: 53.38 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.06 -9.75 -40.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778620980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.046 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds