Wall clock time and date at job start Sat Apr 11 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99959 * 2 1 4 4 C 1.50701 * 109.47081 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99971 * 4.79288 * 4 3 2 6 6 C 1.38217 * 120.00120 * 179.97438 * 5 4 3 7 7 C 1.38262 * 119.99572 * 0.02562 * 6 5 4 8 8 C 1.38212 * 120.00308 * 359.69655 * 7 6 5 9 9 C 1.38213 * 120.00309 * 184.77223 * 4 3 2 10 10 S 1.76208 * 119.99468 * 0.02562 * 9 4 3 11 11 O 1.42099 * 106.39630 * 180.02562 * 10 9 4 12 12 O 1.42097 * 106.40292 * 47.09717 * 10 9 4 13 13 N 1.65596 * 107.21669 * 293.55261 * 10 9 4 14 14 C 1.46496 * 120.00198 * 278.02010 * 13 10 9 15 15 C 1.50698 * 109.47075 * 94.19895 * 14 13 10 16 16 H 1.08001 * 120.00335 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00150 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00032 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00344 * 179.97438 * 17 15 14 20 20 H 1.48513 * 109.46775 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47226 * 120.00018 * 19 17 15 22 22 H 1.48496 * 109.47468 * 240.00390 * 19 17 15 23 23 C 1.46507 * 119.99895 * 97.74750 * 13 10 9 24 24 C 1.53001 * 109.46990 * 108.64216 * 23 13 10 25 25 C 1.53002 * 109.46754 * 174.74899 * 24 23 13 26 26 C 1.52997 * 109.47490 * 294.74775 * 24 23 13 27 27 H 1.08999 * 109.47090 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47477 * 300.00153 * 1 2 3 29 29 H 1.09004 * 109.46426 * 60.00510 * 1 2 3 30 30 H 1.08997 * 109.46906 * 59.99785 * 3 2 1 31 31 H 1.09001 * 109.47040 * 299.99094 * 3 2 1 32 32 H 1.07996 * 120.00057 * 0.02562 * 5 4 3 33 33 H 1.07996 * 120.00392 * 180.02562 * 6 5 4 34 34 H 1.07997 * 119.99317 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.00048 * 180.29484 * 8 7 6 36 36 H 1.09004 * 109.47090 * 214.19577 * 14 13 10 37 37 H 1.08998 * 109.47358 * 334.19989 * 14 13 10 38 38 H 0.96995 * 120.00073 * 179.97438 * 18 17 15 39 39 H 1.08993 * 109.46894 * 228.64632 * 23 13 10 40 40 H 1.09000 * 109.46620 * 348.64691 * 23 13 10 41 41 H 1.09004 * 109.46754 * 54.75266 * 24 23 13 42 42 H 1.08992 * 109.47162 * 60.00249 * 25 24 23 43 43 H 1.08999 * 109.46791 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.47255 * 299.99672 * 25 24 23 45 45 H 1.08997 * 109.46938 * 185.29040 * 26 24 23 46 46 H 1.08999 * 109.47145 * 305.29296 * 26 24 23 47 47 H 1.09006 * 109.46883 * 65.28972 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1075 -0.0576 -0.0989 6 6 5.4853 -0.1667 -0.0989 7 6 6.2686 0.9683 0.0013 8 6 5.6739 2.2124 0.0950 9 6 4.2956 2.3210 0.1003 10 16 3.5373 3.9064 0.2274 11 8 4.5951 4.8514 0.3125 12 8 2.5204 3.7871 1.2127 13 7 2.7654 4.1971 -1.2086 14 6 3.5209 4.7035 -2.3570 15 6 3.9584 3.5479 -3.2196 16 1 3.7000 2.5372 -2.9401 17 6 4.6888 3.7808 -4.3657 18 7 5.0040 5.0114 -4.7058 19 14 5.2317 2.3483 -5.4346 20 1 4.7536 1.0756 -4.8368 21 1 4.6585 2.5013 -6.7958 22 1 6.7140 2.3290 -5.5209 23 6 1.3280 3.9420 -1.3323 24 6 0.5791 5.2736 -1.4148 25 6 -0.9052 5.0086 -1.6751 26 6 0.7381 6.0309 -0.0949 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.6885 1.8464 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.4956 -0.9440 -0.1776 33 1 5.9501 -1.1384 -0.1771 34 1 7.3452 0.8829 0.0017 35 1 6.2858 3.0992 0.1685 36 1 2.8895 5.3737 -2.9404 37 1 4.3981 5.2460 -2.0042 38 1 5.5181 5.1753 -5.5118 39 1 1.1384 3.3619 -2.2353 40 1 0.9820 3.3838 -0.4624 41 1 0.9895 5.8715 -2.2286 42 1 -1.3156 4.4107 -0.8614 43 1 -1.4387 5.9572 -1.7343 44 1 -1.0185 4.4691 -2.6154 45 1 0.1288 6.9343 -0.1188 46 1 0.4142 5.3958 0.7296 47 1 1.7846 6.3020 0.0446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778620980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:05 Heat of formation + Delta-G solvation = -114.747264 kcal Electronic energy + Delta-G solvation = -30307.821925 eV Core-core repulsion = 26389.084966 eV Total energy + Delta-G solvation = -3918.736959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.55890 -38.96797 -38.39096 -38.23538 -36.96397 -35.46704 -34.01313 -33.19458 -32.17854 -29.42962 -28.26353 -27.99889 -26.84967 -26.19563 -24.54293 -24.00911 -22.69150 -21.07685 -19.93767 -19.04864 -18.64349 -18.29790 -17.63006 -17.18146 -17.10348 -16.90670 -16.39173 -15.78193 -15.73807 -15.70950 -15.39284 -15.21853 -15.07421 -14.40820 -14.36006 -13.93020 -13.78642 -13.64193 -13.41258 -13.38342 -13.17317 -13.08207 -13.01176 -12.93183 -12.88880 -12.56558 -12.47336 -12.34680 -12.25287 -12.19376 -12.01345 -11.83637 -11.55910 -11.55322 -11.34710 -10.83011 -10.59537 -10.32185 -9.80625 -9.70182 -8.18463 -6.30779 -0.59292 -0.15218 0.30543 1.37209 1.39883 1.50630 1.96357 2.39615 2.48856 2.61471 2.75903 3.13287 3.32299 3.59916 3.81032 3.92350 3.97557 4.05397 4.12150 4.21787 4.30528 4.34712 4.36238 4.50867 4.60158 4.60593 4.65811 4.73714 4.79112 4.85440 4.87719 4.92755 4.95171 5.04469 5.11737 5.14762 5.25165 5.27255 5.29810 5.37121 5.39986 5.45462 5.57818 5.74292 5.89622 5.90557 6.07968 6.08720 6.80634 7.38929 8.89680 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007793 B = 0.007025 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3591.890793 B = 3984.677626 C = 5276.657609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.394 6.394 3 C 0.053 3.947 4 C -0.004 4.004 5 C -0.131 4.131 6 C -0.064 4.064 7 C -0.144 4.144 8 C -0.039 4.039 9 C -0.675 4.675 10 S 2.690 3.310 11 O -0.997 6.997 12 O -0.973 6.973 13 N -0.980 5.980 14 C 0.264 3.736 15 C -0.538 4.538 16 H 0.063 0.937 17 C 0.017 3.983 18 N -0.925 5.925 19 Si 0.949 3.051 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.281 1.281 23 C 0.115 3.885 24 C -0.113 4.113 25 C -0.136 4.136 26 C -0.150 4.150 27 H 0.110 0.890 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.132 0.868 36 H 0.033 0.967 37 H 0.017 0.983 38 H 0.266 0.734 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.549 -9.703 8.529 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.314 6.314 3 C -0.023 4.023 4 C -0.006 4.006 5 C -0.149 4.149 6 C -0.082 4.082 7 C -0.163 4.163 8 C -0.059 4.059 9 C -0.764 4.764 10 S 2.784 3.216 11 O -0.987 6.987 12 O -0.963 6.963 13 N -0.819 5.819 14 C 0.140 3.860 15 C -0.577 4.577 16 H 0.081 0.919 17 C -0.183 4.183 18 N -0.564 5.564 19 Si 0.774 3.226 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.207 1.207 23 C -0.010 4.010 24 C -0.134 4.134 25 C -0.194 4.194 26 C -0.207 4.207 27 H 0.128 0.872 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.171 0.829 33 H 0.186 0.814 34 H 0.178 0.822 35 H 0.150 0.850 36 H 0.051 0.949 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.339 -9.194 9.114 15.399 hybrid contribution 0.860 -0.467 -1.222 1.565 sum -7.479 -9.661 7.892 14.545 Atomic orbital electron populations 1.23089 0.78680 1.04644 1.01389 1.87766 1.22069 1.25785 1.95744 1.22270 0.89531 0.87208 1.03272 1.19458 0.94365 0.93284 0.93478 1.21351 0.95731 0.97327 1.00518 1.21894 0.93397 1.00108 0.92761 1.21637 1.01955 0.91686 1.00991 1.21064 0.92309 1.00020 0.92464 1.30501 1.05238 1.20894 1.19762 1.01617 0.72828 0.74105 0.73046 1.93480 1.57975 1.60676 1.86609 1.93469 1.57640 1.87552 1.57625 1.57173 1.16606 1.79352 1.28726 1.18743 0.90421 0.94160 0.82647 1.21793 1.34065 0.93940 1.07885 0.91858 1.25672 0.95909 0.97824 0.98867 1.70048 1.39594 1.20894 1.25902 0.85637 0.78043 0.80047 0.78842 1.18933 1.20258 1.20711 1.21791 0.78044 0.98008 1.03158 1.21488 0.97381 0.96324 0.98194 1.21729 0.92747 1.02639 1.02280 1.21895 1.00119 1.01194 0.97513 0.87208 0.92756 0.92863 0.88677 0.89906 0.82939 0.81413 0.82206 0.84982 0.94933 0.96513 0.92531 0.90320 0.88612 0.92088 0.91193 0.91343 0.92062 0.90665 0.91382 0.96096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.39 -10.65 9.20 -148.98 -1.37 -12.02 16 3 C 0.05 1.66 4.06 71.24 0.29 1.95 16 4 C 0.00 -0.15 5.87 -19.87 -0.12 -0.27 16 5 C -0.13 -3.92 9.38 22.27 0.21 -3.71 16 6 C -0.06 -1.67 10.05 22.27 0.22 -1.45 16 7 C -0.14 -4.20 10.05 22.27 0.22 -3.98 16 8 C -0.04 -1.44 9.55 22.27 0.21 -1.23 16 9 C -0.68 -26.29 5.91 22.27 0.13 -26.15 16 10 S 2.69 112.18 4.97 -56.49 -0.28 111.90 16 11 O -1.00 -48.32 15.72 -128.00 -2.01 -50.33 16 12 O -0.97 -38.04 13.69 -128.00 -1.75 -39.79 16 13 N -0.98 -40.57 2.32 -519.85 -1.21 -41.78 16 14 C 0.26 13.26 5.35 85.63 0.46 13.71 16 15 C -0.54 -28.36 9.39 25.60 0.24 -28.12 16 16 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 17 C 0.02 0.92 5.46 84.66 0.46 1.38 16 18 N -0.92 -53.33 13.29 21.45 0.28 -53.05 16 19 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 C 0.11 3.82 3.07 86.38 0.27 4.09 16 24 C -0.11 -3.41 2.99 -10.79 -0.03 -3.44 16 25 C -0.14 -2.97 9.19 71.98 0.66 -2.30 16 26 C -0.15 -4.49 8.67 71.98 0.62 -3.87 16 27 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.10 2.95 5.94 -2.39 -0.01 2.93 16 31 H 0.08 2.58 4.75 -2.39 -0.01 2.57 16 32 H 0.15 3.97 7.02 -2.91 -0.02 3.95 16 33 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.13 4.95 7.33 -2.91 -0.02 4.93 16 36 H 0.03 1.70 7.01 -2.39 -0.02 1.68 16 37 H 0.02 0.95 7.05 -2.39 -0.02 0.94 16 38 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.08 2.57 7.97 -2.39 -0.02 2.55 16 40 H 0.10 2.81 4.79 -2.39 -0.01 2.80 16 41 H 0.06 2.09 7.06 -2.38 -0.02 2.07 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.07 1.93 8.03 -2.39 -0.02 1.91 16 47 H 0.02 0.71 7.79 -2.38 -0.02 0.69 16 Total: -1.00 -68.66 384.02 1.75 -66.91 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.96 Total: 25.20 kcal Atomic # 6 Polarization: -56.92 SS G_CDS: 5.10 Total: -51.82 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -0.92 Total: -94.83 kcal Atomic # 8 Polarization: -97.01 SS G_CDS: -5.13 Total: -102.14 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 112.18 SS G_CDS: -0.28 Total: 111.90 kcal Total: -68.66 1.75 -66.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778620980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.837 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds