Wall clock time and date at job start Sat Apr 11 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.43212 * 179.97438 * 2 1 4 4 C 1.39584 * 120.10436 * 282.21429 * 3 2 1 5 5 C 1.38004 * 119.99513 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.21650 * 359.74121 * 5 4 3 7 7 C 1.38946 * 120.21485 * 0.51640 * 6 5 4 8 8 N 1.39942 * 119.99972 * 179.76669 * 7 6 5 9 9 C 1.34781 * 119.99646 * 213.53921 * 8 7 6 10 10 O 1.21285 * 120.00450 * 5.23281 * 9 8 7 11 11 C 1.50704 * 119.99649 * 185.23026 * 9 8 7 12 12 N 1.46501 * 109.46694 * 180.02562 * 11 9 8 13 13 C 1.34779 * 119.99973 * 180.02562 * 12 11 9 14 14 O 1.21596 * 119.99685 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00235 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99721 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.46891 * 184.84184 * 16 15 13 18 18 C 1.50695 * 115.55005 * 304.35792 * 17 16 15 19 19 H 1.07996 * 120.00281 * 95.07827 * 18 17 16 20 20 C 1.37883 * 120.00154 * 274.79951 * 18 17 16 21 21 N 1.31516 * 119.99682 * 355.40764 * 20 18 17 22 22 Si 1.86801 * 120.00215 * 175.39922 * 20 18 17 23 23 H 1.48502 * 109.46847 * 60.00278 * 22 20 18 24 24 H 1.48504 * 109.46970 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47109 * 300.00334 * 22 20 18 26 26 C 1.52996 * 117.49788 * 90.02831 * 17 16 15 27 27 C 1.53001 * 117.49907 * 158.68600 * 17 16 15 28 28 C 1.38646 * 119.99730 * 359.48538 * 7 6 5 29 29 H 4.52039 * 14.03058 * 359.97438 * 4 2 1 30 30 H 1.08003 * 120.00460 * 359.95876 * 4 3 2 31 31 H 1.07999 * 119.89176 * 180.02562 * 5 4 3 32 32 H 1.07994 * 119.89402 * 180.25498 * 6 5 4 33 33 H 0.97001 * 120.00458 * 33.53656 * 8 7 6 34 34 H 1.09001 * 109.46753 * 60.00721 * 11 9 8 35 35 H 1.08994 * 109.47552 * 300.00241 * 11 9 8 36 36 H 0.96997 * 120.00411 * 0.02562 * 12 11 9 37 37 H 0.96993 * 119.99676 * 359.97438 * 15 13 12 38 38 H 1.09008 * 109.47440 * 64.84694 * 16 15 13 39 39 H 1.09001 * 109.47734 * 304.84332 * 16 15 13 40 40 H 0.96998 * 119.99926 * 185.00136 * 21 20 18 41 41 H 1.09007 * 117.49806 * 215.00395 * 26 17 16 42 42 H 1.09001 * 117.49840 * 0.02562 * 26 17 16 43 43 H 1.09000 * 117.49753 * 359.97438 * 27 17 16 44 44 H 1.08997 * 117.49775 * 144.97385 * 27 17 16 45 45 H 1.08003 * 120.10756 * 180.23477 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3063 -0.2545 1.1802 5 6 4.6863 -0.2539 1.1775 6 6 5.3796 -0.0064 0.0075 7 6 4.6916 0.2540 -1.1713 8 7 5.3980 0.5088 -2.3521 9 6 4.9010 1.3698 -3.2622 10 8 3.8911 1.9951 -3.0173 11 6 5.6003 1.5555 -4.5842 12 7 4.8691 2.5366 -5.3898 13 6 5.3128 2.8638 -6.6196 14 8 6.3203 2.3449 -7.0604 15 7 4.6405 3.7668 -7.3605 16 6 5.1232 4.1228 -8.6971 17 6 4.2570 5.2466 -9.2696 18 6 2.7778 4.9638 -9.3237 19 1 2.1349 5.2956 -8.5218 20 6 2.2442 4.2865 -10.3996 21 7 3.0094 3.9668 -11.4204 22 14 0.4347 3.8230 -10.4074 23 1 -0.3918 5.0531 -10.3122 24 1 0.1128 3.1060 -11.6675 25 1 0.1447 2.9408 -9.2486 26 6 4.6912 6.6864 -8.9881 27 6 4.8550 6.0978 -10.3916 28 6 3.3052 0.2555 -1.1788 29 1 -1.0500 0.0004 0.0003 30 1 2.7681 -0.4522 2.0955 31 1 5.2264 -0.4519 2.0916 32 1 6.4596 -0.0112 0.0104 33 1 6.2454 0.0658 -2.5157 34 1 5.6348 0.6034 -5.1138 35 1 6.6156 1.9121 -4.4113 36 1 4.0657 2.9509 -5.0380 37 1 3.8371 4.1810 -7.0088 38 1 5.0645 3.2510 -9.3488 39 1 6.1581 4.4589 -8.6322 40 1 2.6204 3.5554 -12.2080 41 1 3.9069 7.4292 -8.8420 42 1 5.5942 6.8330 -8.3955 43 1 5.8657 5.8574 -10.7216 44 1 4.1786 6.4529 -11.1690 45 1 2.7686 0.4539 -2.0948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797434595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:24 Heat of formation + Delta-G solvation = 22.834840 kcal Electronic energy + Delta-G solvation = -27596.332698 eV Core-core repulsion = 23580.410547 eV Total energy + Delta-G solvation = -4015.922151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85831 -40.86399 -39.66970 -38.51651 -36.32086 -35.45032 -34.92881 -34.44221 -33.95385 -31.48646 -31.01297 -29.08751 -27.70466 -26.60811 -24.60417 -23.80696 -22.90822 -21.80594 -21.63608 -21.24323 -20.33454 -19.56304 -18.36246 -17.86421 -17.67921 -17.39229 -17.10196 -16.92088 -16.64393 -16.27730 -15.89391 -15.68255 -15.64920 -15.25046 -14.92415 -14.58825 -14.47184 -14.35643 -14.23796 -13.99555 -13.50699 -13.41241 -12.92855 -12.92245 -12.81310 -12.70336 -12.39051 -12.33594 -11.99688 -11.63003 -11.49546 -11.36121 -11.27895 -11.10451 -10.93352 -10.44788 -10.36732 -10.03607 -9.67505 -9.62144 -9.19358 -8.08914 -6.22778 -0.10935 0.23970 1.31876 1.42143 1.43858 1.44580 1.49977 1.72673 2.02085 2.12992 2.20195 2.42086 2.97667 3.18469 3.26599 3.33181 3.50021 3.63694 3.95115 4.14323 4.19621 4.26390 4.31095 4.32809 4.46725 4.51667 4.56820 4.66900 4.69270 4.75435 5.01161 5.05099 5.12292 5.20861 5.25883 5.30783 5.34430 5.42955 5.48059 5.54187 5.64248 5.73317 5.78767 5.93421 6.06540 6.23280 6.38221 6.52456 6.84314 6.90402 7.14629 7.46614 7.61303 8.97747 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.002194 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.145304 B =12761.205471 C =14285.629072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.201 4.201 3 C 0.004 3.996 4 C -0.116 4.116 5 C -0.092 4.092 6 C -0.125 4.125 7 C 0.136 3.864 8 N -0.653 5.653 9 C 0.516 3.484 10 O -0.549 6.549 11 C 0.125 3.875 12 N -0.735 5.735 13 C 0.703 3.297 14 O -0.636 6.636 15 N -0.715 5.715 16 C 0.198 3.802 17 C 0.001 3.999 18 C -0.505 4.505 19 H 0.061 0.939 20 C 0.027 3.973 21 N -0.905 5.905 22 Si 0.947 3.053 23 H -0.271 1.271 24 H -0.290 1.290 25 H -0.274 1.274 26 C -0.181 4.181 27 C -0.150 4.150 28 C -0.124 4.124 29 H 0.258 0.742 30 H 0.143 0.857 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.435 0.565 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.410 0.590 37 H 0.406 0.594 38 H 0.026 0.974 39 H 0.043 0.957 40 H 0.259 0.741 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 -10.014 26.749 28.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.201 4.201 3 C 0.003 3.997 4 C -0.134 4.134 5 C -0.110 4.110 6 C -0.145 4.145 7 C 0.042 3.958 8 N -0.300 5.300 9 C 0.304 3.696 10 O -0.426 6.426 11 C -0.002 4.002 12 N -0.394 5.394 13 C 0.402 3.598 14 O -0.519 6.519 15 N -0.368 5.368 16 C 0.073 3.927 17 C 0.000 4.000 18 C -0.542 4.542 19 H 0.079 0.921 20 C -0.174 4.174 21 N -0.542 5.542 22 Si 0.773 3.227 23 H -0.196 1.196 24 H -0.216 1.216 25 H -0.199 1.199 26 C -0.218 4.218 27 C -0.189 4.189 28 C -0.144 4.144 29 H 0.274 0.726 30 H 0.160 0.840 31 H 0.186 0.814 32 H 0.183 0.817 33 H 0.275 0.725 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.247 0.753 37 H 0.241 0.759 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.698 -10.177 26.277 28.567 hybrid contribution -1.708 -0.044 -0.655 1.830 sum 2.990 -10.221 25.622 27.747 Atomic orbital electron populations 1.25813 0.96677 0.97430 0.97370 1.20595 0.93063 1.03197 1.03209 1.16039 0.87050 1.02178 0.94421 1.21479 0.95233 0.99909 0.96804 1.21321 0.93062 0.97593 0.98993 1.21405 1.01857 1.01346 0.89926 1.17703 0.90417 1.00567 0.87117 1.43197 1.25662 1.44051 1.17098 1.20849 0.84523 0.78268 0.85967 1.90750 1.26317 1.46946 1.78608 1.20950 0.96616 0.95108 0.87574 1.44656 1.32156 1.47082 1.15506 1.15952 0.82919 0.80102 0.80779 1.90845 1.28409 1.59195 1.73426 1.44956 1.30363 1.44055 1.17426 1.20435 0.94741 0.96766 0.80714 1.19095 0.93991 0.87554 0.99384 1.20592 0.91441 1.36044 1.06161 0.92062 1.25659 1.01027 0.95147 0.95545 1.70096 1.36374 1.42168 1.05571 0.85796 0.81312 0.78501 0.77077 1.19571 1.21626 1.19935 1.23028 1.01833 0.97938 0.98968 1.22378 0.99337 1.05635 0.91519 1.21108 0.93684 1.01582 0.98058 0.72567 0.83950 0.81372 0.81727 0.72465 0.87109 0.86297 0.75291 0.75908 0.95569 0.93873 0.93187 0.89960 0.89360 0.90959 0.91685 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 19.25 74.32 1.43 -1.36 16 2 C -0.20 -4.57 13.24 30.02 0.40 -4.17 16 3 C 0.00 0.08 5.72 -21.43 -0.12 -0.04 16 4 C -0.12 -1.75 9.75 22.54 0.22 -1.53 16 5 C -0.09 -0.93 10.02 22.21 0.22 -0.71 16 6 C -0.13 -1.37 9.95 22.44 0.22 -1.15 16 7 C 0.14 2.37 6.27 38.11 0.24 2.60 16 8 N -0.65 -9.29 5.34 -303.60 -1.62 -10.91 16 9 C 0.52 10.79 7.63 87.66 0.67 11.46 16 10 O -0.55 -15.95 13.38 -3.04 -0.04 -15.99 16 11 C 0.12 2.63 6.16 85.63 0.53 3.16 16 12 N -0.73 -21.41 5.53 -482.28 -2.67 -24.07 16 13 C 0.70 26.58 8.57 179.05 1.53 28.11 16 14 O -0.64 -27.81 16.34 -4.02 -0.07 -27.87 16 15 N -0.72 -28.60 5.42 -478.51 -2.60 -31.20 16 16 C 0.20 9.11 5.56 86.38 0.48 9.59 16 17 C 0.00 0.02 1.61 -52.93 -0.09 -0.06 16 18 C -0.50 -25.96 8.13 25.60 0.21 -25.75 16 19 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 20 C 0.03 1.45 5.43 84.66 0.46 1.91 16 21 N -0.90 -51.15 12.64 21.45 0.27 -50.88 16 22 Si 0.95 42.78 29.54 68.60 2.03 44.81 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C -0.18 -7.36 9.93 30.62 0.30 -7.06 16 27 C -0.15 -6.92 9.16 30.62 0.28 -6.64 16 28 C -0.12 -2.93 8.35 22.65 0.19 -2.74 16 29 H 0.26 2.22 7.80 -4.42 -0.03 2.19 16 30 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 32 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.43 2.60 8.82 -92.71 -0.82 1.78 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.41 11.69 7.45 -92.71 -0.69 11.00 16 37 H 0.41 15.27 8.00 -92.71 -0.74 14.53 16 38 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.04 1.92 8.09 -2.39 -0.02 1.90 16 40 H 0.26 14.18 8.32 -92.71 -0.77 13.40 16 41 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 42 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 45 H 0.11 3.17 6.45 -2.91 -0.02 3.15 16 Total: -1.00 -74.81 398.17 1.28 -73.52 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -1.20 Total: 36.96 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 7.18 Total: 5.62 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -6.61 Total: -117.06 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.11 Total: -43.86 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.81 1.28 -73.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797434595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.360 kcal (2) G-P(sol) polarization free energy of solvation -74.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds