Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29953 * 126.28821 * 2 1 4 4 O 1.21303 * 110.24321 * 179.72631 * 3 2 1 5 5 C 1.33633 * 109.81560 * 0.47185 * 4 3 2 6 6 C 1.50702 * 126.55144 * 179.80151 * 5 4 3 7 7 H 1.08998 * 110.00256 * 193.58898 * 6 5 4 8 8 C 1.54330 * 109.88393 * 72.49239 * 6 5 4 9 9 C 1.55151 * 102.94569 * 262.77992 * 8 6 5 10 10 C 1.54920 * 101.57969 * 324.49755 * 9 8 6 11 11 N 1.47025 * 109.88281 * 314.68970 * 6 5 4 12 12 C 1.34777 * 125.64132 * 300.20950 * 11 6 5 13 13 O 1.21282 * 120.00437 * 359.97438 * 12 11 6 14 14 C 1.50705 * 119.99602 * 180.02562 * 12 11 6 15 15 C 1.50699 * 109.46961 * 180.02562 * 14 12 11 16 16 C 1.37641 * 120.12495 * 264.72366 * 15 14 12 17 17 C 1.38622 * 120.24588 * 179.72666 * 16 15 14 18 18 C 1.38653 * 120.49975 * 0.55081 * 17 16 15 19 19 C 1.37601 * 120.25127 * 359.72326 * 18 17 16 20 20 C 1.40701 * 120.12958 * 84.99989 * 15 14 12 21 21 C 1.41393 * 120.24486 * 359.97438 * 20 15 14 22 22 H 1.08005 * 119.99654 * 334.09011 * 21 20 15 23 23 C 1.39943 * 119.99833 * 154.08760 * 21 20 15 24 24 N 1.30813 * 120.00341 * 343.62178 * 23 21 20 25 25 Si 1.86801 * 119.99504 * 163.62016 * 23 21 20 26 26 H 1.48502 * 109.47589 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46943 * 120.00292 * 25 23 21 28 28 H 1.48500 * 109.47121 * 239.99793 * 25 23 21 29 29 N 1.31133 * 106.90004 * 359.53527 * 5 4 3 30 30 H 1.08994 * 109.47188 * 269.97837 * 1 2 3 31 31 H 1.09002 * 109.47062 * 29.97575 * 1 2 3 32 32 H 1.08999 * 109.47255 * 149.97364 * 1 2 3 33 33 H 1.09005 * 110.71595 * 21.14392 * 8 6 5 34 34 H 1.09000 * 110.72108 * 144.41290 * 8 6 5 35 35 H 1.09002 * 111.00745 * 82.56506 * 9 8 6 36 36 H 1.08995 * 111.00820 * 206.38899 * 9 8 6 37 37 H 1.09004 * 110.36016 * 278.17015 * 10 9 8 38 38 H 1.08993 * 110.36634 * 155.84923 * 10 9 8 39 39 H 1.08999 * 109.46749 * 299.99688 * 14 12 11 40 40 H 1.08995 * 109.47569 * 59.99625 * 14 12 11 41 41 H 1.08001 * 119.87648 * 359.97379 * 16 15 14 42 42 H 1.07994 * 119.74823 * 180.30428 * 17 16 15 43 43 H 1.07999 * 119.87291 * 179.75315 * 18 17 16 44 44 H 1.07991 * 120.12937 * 180.02562 * 19 18 17 45 45 H 0.96996 * 120.00290 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7122 0.0054 5 6 3.5298 -0.6212 -0.0008 6 6 4.7969 -1.4371 -0.0014 7 1 4.5720 -2.4748 -0.2477 8 6 5.4709 -1.3609 1.3849 9 6 6.5383 -0.2516 1.1919 10 6 6.9803 -0.4968 -0.2725 11 7 5.7463 -0.8856 -0.9791 12 6 5.5269 -0.7614 -2.3031 13 8 4.4712 -1.1214 -2.7793 14 6 6.5940 -0.1762 -3.1920 15 6 6.1016 -0.1480 -4.6160 16 6 6.4182 -1.1742 -5.4769 17 6 5.9618 -1.1535 -6.7857 18 6 5.1923 -0.0960 -7.2461 19 6 4.8684 0.9434 -6.4046 20 6 5.3214 0.9304 -5.0723 21 6 4.9944 1.9928 -4.1984 22 1 4.9567 1.8230 -3.1325 23 6 4.7196 3.2641 -4.7148 24 7 5.0676 3.5617 -5.9401 25 14 3.8559 4.5362 -3.6540 26 1 3.5712 3.9553 -2.3173 27 1 4.7291 5.7273 -3.4998 28 1 2.5811 4.9375 -4.3015 29 7 2.3029 -1.0841 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 4.7491 -1.0729 2.1492 34 1 5.9428 -2.3106 1.6369 35 1 6.0976 0.7388 1.3063 36 1 7.3723 -0.3879 1.8803 37 1 7.7132 -1.3024 -0.3176 38 1 7.3920 0.4163 -0.7024 39 1 6.8216 0.8388 -2.8665 40 1 7.4940 -0.7880 -3.1304 41 1 7.0210 -2.0006 -5.1303 42 1 6.2109 -1.9654 -7.4529 43 1 4.8455 -0.0883 -8.2688 44 1 4.2686 1.7659 -6.7651 45 1 4.8768 4.4427 -6.2981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804904661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = 31.877721 kcal Electronic energy + Delta-G solvation = -30539.036814 eV Core-core repulsion = 26523.506791 eV Total energy + Delta-G solvation = -4015.530023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.67733 -41.27342 -39.54369 -38.33382 -37.15102 -35.55839 -34.38893 -33.51545 -32.48725 -31.38122 -30.52870 -29.92920 -28.47270 -26.93795 -25.31715 -24.57664 -23.33092 -22.86434 -22.27882 -21.36415 -20.13841 -19.24339 -19.10188 -18.61433 -17.92094 -17.66971 -17.24329 -16.55866 -16.18828 -15.91852 -15.43911 -15.38565 -15.00636 -14.98176 -14.54208 -14.47610 -14.43618 -13.90748 -13.89379 -13.59167 -13.50169 -13.42589 -13.29913 -12.97623 -12.83460 -12.80067 -12.72193 -12.55244 -12.27761 -12.22478 -12.18621 -12.13197 -11.74714 -11.35866 -11.25068 -11.09469 -11.08570 -10.79737 -9.88408 -9.26229 -9.20048 -8.66667 -6.34878 0.03030 0.91866 1.05574 1.11748 1.25748 1.39229 1.43242 1.55030 1.77857 2.03360 2.12054 2.64415 2.72099 3.02362 3.37870 3.62377 3.70662 3.78290 4.03322 4.11216 4.28082 4.36784 4.38627 4.42458 4.48199 4.52918 4.56495 4.57921 4.68404 4.73471 4.80392 4.84913 4.86922 4.91316 4.99614 5.02325 5.10776 5.14986 5.28899 5.32787 5.36164 5.51020 5.73006 5.99540 6.12109 6.18266 6.37584 6.41311 6.69797 6.94130 7.05515 7.06738 7.22130 8.29915 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009194 B = 0.005053 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.824415 B = 5539.581974 C = 6719.442781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.159 3.841 3 N -0.418 5.418 4 O 0.065 5.935 5 C 0.186 3.814 6 C 0.221 3.779 7 H 0.119 0.881 8 C -0.108 4.108 9 C -0.127 4.127 10 C 0.088 3.912 11 N -0.623 5.623 12 C 0.531 3.469 13 O -0.569 6.569 14 C -0.058 4.058 15 C -0.189 4.189 16 C -0.088 4.088 17 C -0.239 4.239 18 C -0.117 4.117 19 C -0.194 4.194 20 C 0.096 3.904 21 C -0.479 4.479 22 H 0.061 0.939 23 C 0.043 3.957 24 N -0.822 5.822 25 Si 0.956 3.044 26 H -0.274 1.274 27 H -0.251 1.251 28 H -0.269 1.269 29 N -0.499 5.499 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.063 0.937 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.906 -7.594 17.947 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.114 4.114 3 N -0.130 5.130 4 O 0.012 5.988 5 C -0.036 4.036 6 C 0.114 3.886 7 H 0.137 0.863 8 C -0.146 4.146 9 C -0.165 4.165 10 C -0.033 4.033 11 N -0.359 5.359 12 C 0.322 3.678 13 O -0.446 6.446 14 C -0.098 4.098 15 C -0.191 4.191 16 C -0.106 4.106 17 C -0.258 4.258 18 C -0.135 4.135 19 C -0.214 4.214 20 C 0.094 3.906 21 C -0.509 4.509 22 H 0.079 0.921 23 C -0.172 4.172 24 N -0.448 5.448 25 Si 0.778 3.222 26 H -0.198 1.198 27 H -0.175 1.175 28 H -0.194 1.194 29 N -0.233 5.233 30 H 0.135 0.865 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.153 0.847 35 H 0.081 0.919 36 H 0.152 0.848 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.736 -7.053 17.407 18.980 hybrid contribution -0.863 0.966 -0.458 1.374 sum 1.873 -6.087 16.949 18.106 Atomic orbital electron populations 1.20346 0.80179 1.05317 1.05955 1.26719 1.02337 0.83082 0.99220 1.74595 0.89930 1.25259 1.23257 1.85218 1.22260 1.25453 1.65918 1.29868 0.98063 0.82065 0.93575 1.20548 0.80358 0.94018 0.93669 0.86331 1.22837 0.98362 1.03312 0.90114 1.22908 0.99906 0.98283 0.95383 1.22851 0.85600 1.02461 0.92374 1.48880 1.17788 1.63927 1.05289 1.21126 0.88711 0.76796 0.81191 1.90707 1.28936 1.50187 1.74752 1.20233 0.96402 1.02359 0.90774 1.19553 1.05485 0.98779 0.95252 1.20757 0.99321 0.96804 0.93705 1.20748 1.07689 1.00488 0.96921 1.20954 0.99289 0.94889 0.98371 1.21279 1.05045 0.99144 0.95898 1.17712 0.88542 0.91941 0.92438 1.19511 1.43280 0.94051 0.94026 0.92131 1.26470 0.93532 1.00931 0.96226 1.69857 1.35817 1.22591 1.16555 0.85549 0.79168 0.78468 0.79010 1.19846 1.17517 1.19379 1.71811 1.00114 1.29920 1.21503 0.86520 0.89237 0.88204 0.89382 0.84674 0.91861 0.84841 0.87054 0.89801 0.88764 0.86160 0.86048 0.86421 0.87666 0.88816 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.44 10.51 71.24 0.75 -0.69 16 2 C 0.16 5.58 8.22 138.46 1.14 6.72 16 3 N -0.42 -16.61 12.16 -60.32 -0.73 -17.34 16 4 O 0.07 2.54 11.31 74.92 0.85 3.38 16 5 C 0.19 6.33 6.33 88.38 0.56 6.89 16 6 C 0.22 5.53 3.43 44.60 0.15 5.68 16 7 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 8 C -0.11 -1.39 6.48 31.78 0.21 -1.18 16 9 C -0.13 -1.48 7.09 31.99 0.23 -1.25 16 10 C 0.09 1.43 6.69 86.86 0.58 2.01 16 11 N -0.62 -17.42 3.07 -792.16 -2.43 -19.85 16 12 C 0.53 20.91 7.26 87.66 0.64 21.55 16 13 O -0.57 -28.77 15.79 -3.04 -0.05 -28.82 16 14 C -0.06 -2.24 4.19 29.10 0.12 -2.12 16 15 C -0.19 -9.21 4.43 -19.40 -0.09 -9.30 16 16 C -0.09 -3.95 9.66 22.22 0.21 -3.73 16 17 C -0.24 -10.97 10.05 22.46 0.23 -10.74 16 18 C -0.12 -5.87 10.02 22.22 0.22 -5.65 16 19 C -0.19 -11.07 8.68 22.73 0.20 -10.87 16 20 C 0.10 5.42 5.56 -21.29 -0.12 5.30 16 21 C -0.48 -27.22 8.14 23.46 0.19 -27.03 16 22 H 0.06 3.47 6.67 -2.91 -0.02 3.45 16 23 C 0.04 2.33 5.16 85.26 0.44 2.77 16 24 N -0.82 -45.12 10.97 21.82 0.24 -44.88 16 25 Si 0.96 42.53 29.59 68.60 2.03 44.56 16 26 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 27 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 28 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 29 N -0.50 -17.88 11.55 -303.21 -3.50 -21.38 16 30 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.09 1.15 7.82 -2.38 -0.02 1.13 16 34 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.08 1.46 7.49 -2.39 -0.02 1.44 16 39 H 0.09 3.68 6.77 -2.39 -0.02 3.66 16 40 H 0.12 3.49 8.05 -2.39 -0.02 3.48 16 41 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 43 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 44 H 0.09 5.62 6.22 -2.92 -0.02 5.60 16 45 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 Total: -1.00 -83.22 378.28 3.07 -80.14 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.02 Total: 25.82 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 5.66 Total: -21.62 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -6.43 Total: -103.46 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: 0.80 Total: -25.44 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -83.22 3.07 -80.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804904661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.021 kcal (2) G-P(sol) polarization free energy of solvation -83.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds