Wall clock time and date at job start Sat Apr 11 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29943 * 126.28527 * 2 1 4 4 O 1.21304 * 110.24978 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.80947 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.54886 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.87619 * 166.03933 * 6 5 4 8 8 C 1.54329 * 109.87854 * 287.21093 * 6 5 4 9 9 C 1.55156 * 102.93849 * 141.61232 * 8 6 5 10 10 C 1.55134 * 101.49026 * 324.33127 * 9 8 6 11 11 N 1.47022 * 109.88342 * 45.01687 * 6 5 4 12 12 C 1.34781 * 125.64654 * 61.61427 * 11 6 5 13 13 O 1.21283 * 119.99787 * 359.97438 * 12 11 6 14 14 C 1.50695 * 119.99930 * 179.97438 * 12 11 6 15 15 C 1.50707 * 109.47025 * 179.97438 * 14 12 11 16 16 C 1.37638 * 120.12546 * 265.02121 * 15 14 12 17 17 C 1.38617 * 120.24649 * 179.97438 * 16 15 14 18 18 C 1.38653 * 120.49947 * 359.97438 * 17 16 15 19 19 C 1.37596 * 120.25120 * 0.02562 * 18 17 16 20 20 C 1.40700 * 120.12777 * 84.99667 * 15 14 12 21 21 C 1.41399 * 120.24276 * 359.97438 * 20 15 14 22 22 H 1.07993 * 120.00505 * 334.05617 * 21 20 15 23 23 C 1.39945 * 119.99475 * 154.05720 * 21 20 15 24 24 N 1.30820 * 120.00362 * 343.67773 * 23 21 20 25 25 Si 1.86800 * 119.99690 * 163.67471 * 23 21 20 26 26 H 1.48497 * 109.47509 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47141 * 119.99987 * 25 23 21 28 28 H 1.48505 * 109.47397 * 240.00275 * 25 23 21 29 29 N 1.31124 * 106.89875 * 0.22565 * 5 4 3 30 30 H 1.09001 * 109.47483 * 90.01794 * 1 2 3 31 31 H 1.08994 * 109.46833 * 210.02196 * 1 2 3 32 32 H 1.08996 * 109.46743 * 330.01965 * 1 2 3 33 33 H 1.08995 * 110.72083 * 259.97214 * 8 6 5 34 34 H 1.08999 * 110.72059 * 23.07497 * 8 6 5 35 35 H 1.08999 * 111.00556 * 82.57260 * 9 8 6 36 36 H 1.09006 * 111.00445 * 206.42448 * 9 8 6 37 37 H 1.08997 * 110.49559 * 278.45593 * 10 9 8 38 38 H 1.08997 * 110.34603 * 156.06031 * 10 9 8 39 39 H 1.08993 * 109.47357 * 59.99181 * 14 12 11 40 40 H 1.09001 * 109.46702 * 299.99166 * 14 12 11 41 41 H 1.07996 * 119.87564 * 359.97346 * 16 15 14 42 42 H 1.07997 * 119.74384 * 180.02562 * 17 16 15 43 43 H 1.08000 * 119.87416 * 180.28370 * 18 17 16 44 44 H 1.08004 * 120.12564 * 179.97438 * 19 18 17 45 45 H 0.97001 * 119.99960 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0015 6 6 4.7970 -1.4370 -0.0029 7 1 4.5702 -2.4741 0.2439 8 6 5.4697 -1.3590 -1.3896 9 6 6.9798 -1.2914 -1.0398 10 6 6.9584 -0.4448 0.2599 11 7 5.7471 -0.8866 0.9748 12 6 5.5424 -0.7958 2.3038 13 8 4.5004 -1.1876 2.7850 14 6 6.6083 -0.2073 3.1919 15 6 6.1339 -0.2204 4.6223 16 6 5.5329 0.8945 5.1610 17 6 5.0952 0.8851 6.4762 18 6 5.2564 -0.2449 7.2634 19 6 5.8545 -1.3707 6.7458 20 6 6.3033 -1.3725 5.4120 21 6 6.9185 -2.5240 4.8690 22 1 6.8841 -2.7036 3.8046 23 6 7.5718 -3.4311 5.7109 24 7 7.8958 -3.0774 6.9280 25 14 7.9813 -5.1471 5.0967 26 1 7.5129 -5.2963 3.6955 27 1 9.4507 -5.3549 5.1516 28 1 7.3065 -6.1541 5.9545 29 7 2.3030 -1.0841 -0.0064 30 1 -0.3634 -0.0003 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8901 0.5135 33 1 5.2492 -2.2511 -1.9759 34 1 5.1538 -0.4617 -1.9216 35 1 7.3830 -2.2871 -0.8549 36 1 7.5404 -0.7843 -1.8252 37 1 6.8927 0.6171 0.0226 38 1 7.8468 -0.6464 0.8582 39 1 6.8104 0.8190 2.8858 40 1 7.5200 -0.7985 3.1057 41 1 5.4019 1.7799 4.5567 42 1 4.6243 1.7643 6.8905 43 1 4.9075 -0.2427 8.2855 44 1 5.9795 -2.2496 7.3610 45 1 8.3483 -3.7063 7.5116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804904662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:31 Heat of formation + Delta-G solvation = 54.070118 kcal Electronic energy + Delta-G solvation = -30062.163646 eV Core-core repulsion = 26047.595958 eV Total energy + Delta-G solvation = -4014.567688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.48212 -39.99784 -37.93088 -36.81089 -35.98217 -33.61496 -33.23875 -32.03673 -31.23233 -29.62601 -29.42922 -28.84860 -26.81746 -25.06938 -24.24055 -23.36136 -22.15499 -21.33677 -20.91047 -19.87016 -18.80135 -17.97409 -17.29593 -17.13771 -16.82818 -16.51317 -15.44604 -15.26018 -14.55728 -14.48324 -14.04477 -13.97131 -13.75767 -13.64690 -13.45505 -13.39156 -13.01343 -12.70168 -12.55113 -12.49021 -12.19824 -11.98199 -11.77731 -11.56153 -11.44351 -11.27736 -11.19632 -11.12776 -11.05456 -10.97579 -10.93502 -10.67719 -10.38258 -9.88949 -9.47823 -9.37546 -9.26690 -9.15768 -8.68834 -7.30707 -7.28876 -6.73176 -4.33949 1.19206 2.25782 2.72001 2.77846 2.89550 3.07566 3.12551 3.16589 3.26186 3.27690 3.74707 3.93977 4.09300 4.20849 4.37358 4.66702 4.67242 4.92855 5.03084 5.22193 5.26025 5.30771 5.37387 5.46017 5.51330 5.57526 5.61353 5.66459 5.77493 5.88901 5.92164 5.96632 6.04969 6.05946 6.28905 6.36344 6.41382 6.52349 6.79751 7.09166 7.30297 7.42979 7.60907 7.70683 7.93601 8.07296 8.14135 8.23730 8.31962 8.63081 8.68442 8.92134 9.02132 10.21113 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.004041 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.959622 B = 6926.970674 C = 8129.413153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.167 3.833 3 N -0.390 5.390 4 O 0.081 5.919 5 C 0.189 3.811 6 C 0.229 3.771 7 H 0.120 0.880 8 C -0.123 4.123 9 C -0.130 4.130 10 C 0.098 3.902 11 N -0.628 5.628 12 C 0.531 3.469 13 O -0.506 6.506 14 C -0.061 4.061 15 C -0.185 4.185 16 C -0.080 4.080 17 C -0.239 4.239 18 C -0.106 4.106 19 C -0.159 4.159 20 C 0.130 3.870 21 C -0.456 4.456 22 H 0.074 0.926 23 C 0.077 3.923 24 N -0.794 5.794 25 Si 0.902 3.098 26 H -0.261 1.261 27 H -0.275 1.275 28 H -0.272 1.272 29 N -0.475 5.475 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 2.654 -17.010 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 N -0.099 5.099 4 O 0.023 5.977 5 C -0.033 4.033 6 C 0.122 3.878 7 H 0.138 0.862 8 C -0.162 4.162 9 C -0.168 4.168 10 C -0.025 4.025 11 N -0.367 5.367 12 C 0.322 3.678 13 O -0.377 6.377 14 C -0.101 4.101 15 C -0.187 4.187 16 C -0.098 4.098 17 C -0.258 4.258 18 C -0.125 4.125 19 C -0.178 4.178 20 C 0.128 3.872 21 C -0.486 4.486 22 H 0.092 0.908 23 C -0.140 4.140 24 N -0.420 5.420 25 Si 0.727 3.273 26 H -0.185 1.185 27 H -0.200 1.200 28 H -0.197 1.197 29 N -0.209 5.209 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.135 0.865 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.721 2.866 -16.387 16.857 hybrid contribution 0.239 -0.792 -0.036 0.828 sum -2.482 2.074 -16.423 16.738 Atomic orbital electron populations 1.20105 0.83100 1.04755 1.03894 1.25859 1.00523 0.83609 1.00631 1.74578 0.89493 1.24080 1.21727 1.85249 1.22212 1.24725 1.65500 1.29147 0.97043 0.82205 0.94884 1.20027 0.81257 0.95283 0.91216 0.86203 1.22727 0.95752 1.04177 0.93503 1.22864 0.95085 1.01610 0.97204 1.22445 0.88328 0.98623 0.93106 1.48955 1.17265 1.64583 1.05869 1.21295 0.89479 0.77717 0.79355 1.90737 1.27913 1.46280 1.72812 1.20240 0.96889 1.00173 0.92762 1.19050 1.10921 0.95177 0.93563 1.20307 0.98360 0.96304 0.94853 1.20303 1.11692 0.98497 0.95342 1.20680 0.99900 0.94423 0.97456 1.21292 1.01752 0.97732 0.97016 1.17334 0.88014 0.90603 0.91273 1.19489 1.29969 1.04289 0.94840 0.90772 1.25875 0.93813 0.99888 0.94432 1.69827 1.29299 1.35604 1.07281 0.86359 0.78429 0.82178 0.80352 1.18478 1.20004 1.19729 1.71835 0.99564 1.29406 1.20123 0.89546 0.89023 0.89609 0.88717 0.90014 0.89668 0.89160 0.90979 0.89239 0.90423 0.88262 0.89841 0.89682 0.89570 0.86523 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 36.01 0.38 -0.27 16 2 C 0.17 2.60 8.22 -156.37 -1.28 1.31 16 3 N -0.39 -6.54 12.16 30.90 0.38 -6.16 16 4 O 0.08 1.33 11.31 18.10 0.20 1.54 16 5 C 0.19 3.00 6.45 -13.06 -0.08 2.91 16 6 C 0.23 3.03 3.40 -68.10 -0.23 2.80 16 7 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 8 C -0.12 -1.01 6.46 -24.89 -0.16 -1.17 16 9 C -0.13 -0.90 7.10 -24.46 -0.17 -1.08 16 10 C 0.10 0.96 6.70 -2.41 -0.02 0.94 16 11 N -0.63 -9.23 3.05 -164.18 -0.50 -9.73 16 12 C 0.53 10.49 7.27 -10.99 -0.08 10.41 16 13 O -0.51 -12.44 15.87 5.56 0.09 -12.35 16 14 C -0.06 -1.20 4.18 -29.03 -0.12 -1.32 16 15 C -0.19 -4.50 4.43 -103.91 -0.46 -4.96 16 16 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 17 C -0.24 -5.71 10.05 -39.29 -0.39 -6.10 16 18 C -0.11 -2.64 10.02 -39.66 -0.40 -3.03 16 19 C -0.16 -4.28 8.69 -38.88 -0.34 -4.62 16 20 C 0.13 3.49 5.56 -106.82 -0.59 2.90 16 21 C -0.46 -11.92 8.14 -37.74 -0.31 -12.22 16 22 H 0.07 1.88 6.68 -52.49 -0.35 1.53 16 23 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 24 N -0.79 -20.42 10.97 55.55 0.61 -19.81 16 25 Si 0.90 18.65 29.59 -169.99 -5.03 13.62 16 26 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 29 N -0.48 -7.97 11.55 -9.87 -0.11 -8.08 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.64 7.84 -51.93 -0.41 0.23 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.83 7.48 -51.93 -0.39 0.44 16 39 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 40 H 0.10 1.86 6.78 -51.93 -0.35 1.51 16 41 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.08 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 44 H 0.12 3.23 6.22 -52.48 -0.33 2.90 16 45 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -34.15 378.46 -9.43 -43.58 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.03 Total: 5.63 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -4.74 Total: -13.94 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.37 Total: -43.79 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.29 Total: -10.81 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.15 -9.43 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804904662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.647 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds