Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35372 * 126.97075 * 2 1 4 4 C 1.50697 * 126.73421 * 0.02562 * 3 2 1 5 5 C 1.50701 * 109.47289 * 270.28972 * 4 3 2 6 6 O 1.20824 * 119.99864 * 359.97438 * 5 4 3 7 7 O 1.34231 * 120.00042 * 180.02562 * 5 4 3 8 8 C 1.45202 * 117.00085 * 175.18715 * 7 5 4 9 9 C 1.50703 * 112.84672 * 54.49655 * 8 7 5 10 10 H 1.07995 * 120.00354 * 244.95086 * 9 8 7 11 11 C 1.37879 * 119.99718 * 64.96485 * 9 8 7 12 12 N 1.31515 * 120.00010 * 354.94722 * 11 9 8 13 13 Si 1.86796 * 119.99956 * 174.95472 * 11 9 8 14 14 H 1.48499 * 109.47439 * 89.99553 * 13 11 9 15 15 H 1.48499 * 109.47518 * 209.99566 * 13 11 9 16 16 H 1.48501 * 109.47126 * 329.99345 * 13 11 9 17 17 C 1.53781 * 113.61326 * 283.19688 * 8 7 5 18 18 C 1.53775 * 87.07977 * 220.01721 * 17 8 7 19 19 C 1.53774 * 113.61487 * 185.69903 * 8 7 5 20 20 N 1.33773 * 106.53703 * 180.27050 * 3 2 1 21 21 N 1.28602 * 109.06322 * 359.76478 * 20 3 2 22 22 N 1.28733 * 110.23355 * 359.97438 * 21 20 3 23 23 C 1.40248 * 125.94399 * 179.97438 * 22 21 20 24 24 C 1.38820 * 120.06340 * 325.02778 * 23 22 21 25 25 C 1.38119 * 119.93373 * 179.97438 * 24 23 22 26 26 C 1.38276 * 120.06487 * 0.02562 * 25 24 23 27 27 C 1.38273 * 120.13267 * 0.02562 * 26 25 24 28 28 C 1.38126 * 120.06377 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.46937 * 270.14229 * 1 2 3 30 30 H 1.09001 * 109.47309 * 30.14970 * 1 2 3 31 31 H 1.09006 * 109.46523 * 150.15031 * 1 2 3 32 32 H 1.09004 * 109.46818 * 30.28563 * 4 3 2 33 33 H 1.08998 * 109.47679 * 150.28402 * 4 3 2 34 34 H 0.96999 * 119.99793 * 185.00462 * 12 11 9 35 35 H 1.09008 * 113.61260 * 334.56674 * 17 8 7 36 36 H 1.09006 * 113.61594 * 105.46458 * 17 8 7 37 37 H 1.08997 * 113.61388 * 270.88073 * 18 17 8 38 38 H 1.09004 * 113.68981 * 139.99171 * 18 17 8 39 39 H 1.09005 * 113.61305 * 254.52690 * 19 8 7 40 40 H 1.08991 * 113.61654 * 25.34699 * 19 8 7 41 41 H 1.07999 * 120.03468 * 0.02562 * 24 23 22 42 42 H 1.08009 * 119.96898 * 179.72662 * 25 24 23 43 43 H 1.08005 * 119.93494 * 180.02562 * 26 25 24 44 44 H 1.07999 * 119.97271 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.03651 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0815 0.0000 4 6 1.8983 2.5280 0.0005 5 6 1.7499 3.0085 -1.4201 6 8 1.9659 2.2540 -2.3387 7 8 1.3789 4.2751 -1.6648 8 6 1.3600 4.6999 -3.0532 9 6 0.5202 3.8048 -3.9277 10 1 0.9849 3.2259 -4.7120 11 6 -0.8415 3.7252 -3.7264 12 7 -1.3938 4.3517 -2.7106 13 14 -1.9017 2.7273 -4.8966 14 1 -1.9981 1.3287 -4.4069 15 1 -3.2604 3.3229 -4.9638 16 1 -1.2896 2.7370 -6.2496 17 6 2.7567 4.9908 -3.6274 18 6 2.1247 6.1954 -4.3445 19 6 1.0596 6.1970 -3.2353 20 7 3.5747 0.6145 -0.0061 21 7 3.5439 -0.6711 -0.0046 22 7 2.3258 -1.0873 0.0027 23 6 1.9138 -2.4280 0.0059 24 6 2.6467 -3.3823 -0.6865 25 6 2.2389 -4.7019 -0.6811 26 6 1.1016 -5.0727 0.0125 27 6 0.3690 -4.1242 0.7022 28 6 0.7719 -2.8030 0.7005 29 1 -0.3633 0.0026 1.0276 30 1 -0.3634 0.8886 -0.5162 31 1 -0.3632 -0.8914 -0.5115 32 1 0.9447 2.6275 0.5192 33 1 2.6531 3.1271 0.5098 34 1 -2.3392 4.2374 -2.5263 35 1 3.4906 5.2687 -2.8708 36 1 3.1190 4.2190 -4.3066 37 1 1.7274 5.9570 -5.3311 38 1 2.7553 7.0845 -4.3457 39 1 0.0518 6.3991 -3.5980 40 1 1.3282 6.8045 -2.3711 41 1 3.5352 -3.0933 -1.2281 42 1 2.8061 -5.4441 -1.2233 43 1 0.7848 -6.1052 0.0156 44 1 -0.5191 -4.4166 1.2427 45 1 0.1997 -2.0626 1.2396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810858963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = 67.944978 kcal Electronic energy + Delta-G solvation = -29769.778112 eV Core-core repulsion = 25755.812083 eV Total energy + Delta-G solvation = -4013.966029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.33084 -39.54693 -39.15030 -37.10940 -34.79896 -34.11087 -33.50302 -32.26217 -31.42936 -30.43306 -29.13989 -26.90740 -26.03055 -24.51699 -24.11015 -23.38604 -22.93406 -21.29553 -20.86644 -19.58295 -18.53122 -18.01172 -17.02773 -16.67496 -16.48993 -15.38327 -15.19772 -15.03834 -14.94178 -14.79115 -14.53069 -14.01207 -13.98446 -13.84723 -13.56948 -13.20288 -13.03061 -12.89608 -12.64053 -12.26663 -11.91461 -11.84227 -11.60712 -11.52426 -11.42390 -11.06864 -11.03263 -10.84244 -10.76949 -10.51733 -10.34719 -10.26519 -9.90064 -9.75244 -9.41614 -9.24782 -8.90548 -8.81449 -8.73544 -8.48294 -8.44923 -6.09373 -4.17068 0.52712 0.92090 1.83862 2.28467 2.63283 3.25360 3.31417 3.31839 3.37294 3.61098 4.12918 4.33188 4.37175 4.43928 4.50639 4.69536 4.78488 4.93475 4.95875 4.99630 5.18411 5.22783 5.34833 5.45805 5.56563 5.70694 5.74371 5.76876 5.80557 5.89128 5.93391 5.95941 6.00691 6.05182 6.15633 6.20754 6.34373 6.35583 6.49968 6.57663 6.68534 6.87651 6.92945 7.13744 7.35168 7.59470 7.81592 7.96289 8.45278 8.61597 8.84462 9.31330 9.50094 10.95415 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.003408 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.563133 B = 8213.730425 C = 9260.411275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.007 3.993 3 C 0.010 3.990 4 C -0.036 4.036 5 C 0.465 3.535 6 O -0.494 6.494 7 O -0.349 6.349 8 C 0.241 3.759 9 C -0.500 4.500 10 H 0.066 0.934 11 C 0.075 3.925 12 N -0.868 5.868 13 Si 0.889 3.111 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.272 1.272 17 C -0.162 4.162 18 C -0.131 4.131 19 C -0.106 4.106 20 N -0.245 5.245 21 N -0.085 5.085 22 N -0.252 5.252 23 C 0.129 3.871 24 C -0.098 4.098 25 C -0.103 4.103 26 C -0.113 4.113 27 C -0.103 4.103 28 C -0.116 4.116 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 -13.410 8.968 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C -0.126 4.126 4 C -0.076 4.076 5 C 0.305 3.695 6 O -0.382 6.382 7 O -0.266 6.266 8 C 0.207 3.793 9 C -0.537 4.537 10 H 0.084 0.916 11 C -0.130 4.130 12 N -0.505 5.505 13 Si 0.717 3.283 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.200 4.200 18 C -0.169 4.169 19 C -0.144 4.144 20 N -0.112 5.112 21 N -0.062 5.062 22 N -0.040 5.040 23 C 0.039 3.961 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.131 4.131 27 C -0.121 4.121 28 C -0.136 4.136 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.559 -13.853 8.687 16.550 hybrid contribution -1.673 -0.469 -0.693 1.870 sum 0.886 -14.322 7.994 16.426 Atomic orbital electron populations 1.20530 0.85695 1.05325 1.03080 1.22056 0.96294 0.85779 1.08074 1.21005 0.89138 0.95695 1.06772 1.19565 1.04224 0.88341 0.95447 1.22440 0.74734 0.82238 0.90112 1.90592 1.45266 1.56096 1.46202 1.86416 1.76991 1.27605 1.35544 1.21174 0.90595 0.91843 0.75697 1.20923 0.91030 1.25792 1.15958 0.91616 1.24997 0.97783 0.94863 0.95344 1.70031 1.12274 1.40868 1.27314 0.86622 0.79586 0.80223 0.81886 1.20664 1.21063 1.19632 1.23560 0.98642 0.98079 0.99678 1.22512 0.98566 0.96962 0.98824 1.22882 0.99159 0.96180 0.96196 1.74952 1.20800 1.00269 1.15182 1.78311 1.00525 1.06794 1.20585 1.44461 1.05655 1.05347 1.48584 1.17614 0.97259 0.80048 1.01219 1.21103 1.00182 0.92525 0.97949 1.21109 0.96870 0.95153 0.99048 1.21341 0.94981 1.00042 0.96776 1.21050 1.00082 0.91741 0.99262 1.21167 0.95761 0.97667 0.99004 0.89971 0.88290 0.90656 0.86906 0.87004 0.92888 0.91992 0.92166 0.90318 0.92986 0.90582 0.92238 0.84412 0.84680 0.85090 0.84635 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 8.36 36.01 0.30 -0.88 16 2 C 0.01 0.11 6.83 -81.71 -0.56 -0.45 16 3 C 0.01 0.19 5.74 -82.77 -0.48 -0.28 16 4 C -0.04 -0.64 6.08 -29.04 -0.18 -0.82 16 5 C 0.46 10.86 7.60 36.01 0.27 11.13 16 6 O -0.49 -13.15 14.35 -18.75 -0.27 -13.42 16 7 O -0.35 -8.69 9.93 -39.26 -0.39 -9.08 16 8 C 0.24 6.06 0.50 -90.96 -0.05 6.02 16 9 C -0.50 -13.78 6.29 -34.44 -0.22 -14.00 16 10 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 11 C 0.07 2.02 5.24 -17.82 -0.09 1.93 16 12 N -0.87 -23.71 12.54 55.43 0.69 -23.02 16 13 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 C -0.16 -3.64 7.28 -25.92 -0.19 -3.82 16 18 C -0.13 -2.67 7.80 -25.92 -0.20 -2.87 16 19 C -0.11 -2.43 7.19 -25.92 -0.19 -2.62 16 20 N -0.25 -4.91 12.39 33.29 0.41 -4.49 16 21 N -0.09 -1.59 12.85 60.35 0.78 -0.82 16 22 N -0.25 -4.15 3.50 -6.77 -0.02 -4.17 16 23 C 0.13 1.71 6.27 -83.57 -0.52 1.18 16 24 C -0.10 -1.14 9.71 -39.41 -0.38 -1.52 16 25 C -0.10 -0.88 10.04 -39.61 -0.40 -1.28 16 26 C -0.11 -0.83 10.04 -39.55 -0.40 -1.23 16 27 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 28 C -0.12 -1.18 8.34 -39.41 -0.33 -1.51 16 29 H 0.08 0.82 7.80 -51.93 -0.41 0.41 16 30 H 0.10 1.55 8.00 -51.93 -0.42 1.13 16 31 H 0.07 0.94 7.00 -51.93 -0.36 0.57 16 32 H 0.11 1.73 8.00 -51.93 -0.42 1.32 16 33 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 35 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 36 H 0.06 1.40 8.09 -51.93 -0.42 0.98 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.86 7.63 -51.93 -0.40 1.47 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.14 1.67 8.03 -52.49 -0.42 1.24 16 42 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 44 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.14 1.24 6.19 -52.49 -0.33 0.91 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -34.18 381.53 -8.16 -42.33 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.09 Total: 2.90 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -4.00 Total: -12.22 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 1.86 Total: -32.50 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.66 Total: -22.50 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.18 -8.16 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.278 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds