Wall clock time and date at job start Sat Apr 11 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30792 * 125.72373 * 2 1 4 4 C 1.34425 * 109.31706 * 180.02562 * 3 2 1 5 5 C 1.33858 * 107.80302 * 0.02562 * 4 3 2 6 6 N 1.34411 * 125.72037 * 179.97438 * 2 1 3 7 7 C 1.46466 * 128.44613 * 359.81386 * 6 2 1 8 8 C 1.53276 * 108.69502 * 197.34181 * 7 6 2 9 9 H 1.08998 * 109.39820 * 69.28370 * 8 7 6 10 10 C 1.50700 * 109.43196 * 189.16580 * 8 7 6 11 11 O 1.21284 * 120.00335 * 0.23714 * 10 8 7 12 12 N 1.34778 * 119.99985 * 180.24231 * 10 8 7 13 13 C 1.39929 * 120.00161 * 174.56039 * 12 10 8 14 14 C 1.38959 * 120.03117 * 325.30205 * 13 12 10 15 15 C 1.38160 * 120.06480 * 179.97438 * 14 13 12 16 16 C 1.38170 * 120.13692 * 359.97438 * 15 14 13 17 17 C 1.38909 * 120.07059 * 0.02562 * 16 15 14 18 18 O 1.35759 * 120.03194 * 179.97438 * 17 16 15 19 19 C 1.34822 * 116.99757 * 185.62916 * 18 17 16 20 20 H 1.08000 * 120.00172 * 5.36450 * 19 18 17 21 21 C 1.38655 * 119.99979 * 185.35841 * 19 18 17 22 22 N 1.31555 * 119.99959 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99944 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47222 * 89.99709 * 23 21 19 25 25 H 1.48496 * 109.47172 * 210.00178 * 23 21 19 26 26 H 1.48501 * 109.47087 * 329.99635 * 23 21 19 27 27 C 1.38708 * 120.03523 * 145.27453 * 13 12 10 28 28 C 1.53118 * 109.70770 * 309.23706 * 8 7 6 29 29 C 1.50706 * 128.68519 * 179.90710 * 5 4 3 30 30 H 1.09000 * 109.46833 * 90.02491 * 1 2 3 31 31 H 1.08996 * 109.47585 * 210.02943 * 1 2 3 32 32 H 1.09006 * 109.46777 * 330.03248 * 1 2 3 33 33 H 1.08001 * 126.10006 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.59881 * 77.57684 * 7 6 2 35 35 H 1.09001 * 109.60148 * 317.10877 * 7 6 2 36 36 H 0.97004 * 120.00242 * 354.55872 * 12 10 8 37 37 H 1.07995 * 119.97494 * 359.69599 * 14 13 12 38 38 H 1.07998 * 119.93432 * 179.97438 * 15 14 13 39 39 H 1.08004 * 119.95966 * 179.97438 * 16 15 14 40 40 H 0.97009 * 119.99687 * 180.02562 * 22 21 19 41 41 H 1.07999 * 120.07352 * 359.97438 * 27 13 12 42 42 H 1.09003 * 109.49670 * 189.86159 * 28 8 7 43 43 H 1.09001 * 109.49742 * 309.95747 * 28 8 7 44 44 H 1.08994 * 109.74799 * 76.10084 * 29 5 4 45 45 H 1.09007 * 109.78264 * 315.40907 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5928 -0.6561 -0.0015 6 7 2.2918 -1.0913 0.0005 7 6 1.8921 -2.5003 0.0048 8 6 3.0925 -3.3501 0.4364 9 1 3.3039 -3.1693 1.4903 10 6 2.7736 -4.8087 0.2321 11 8 1.6962 -5.1367 -0.2180 12 7 3.6856 -5.7489 0.5497 13 6 3.3502 -7.1049 0.4680 14 6 2.0610 -7.5222 0.7758 15 6 1.7289 -8.8608 0.6950 16 6 2.6767 -9.7885 0.3075 17 6 3.9672 -9.3777 -0.0015 18 8 4.8980 -10.2899 -0.3816 19 6 6.1582 -9.8430 -0.5541 20 1 6.4075 -8.8215 -0.3073 21 6 7.1344 -10.6947 -1.0481 22 7 8.3642 -10.2588 -1.2159 23 14 6.7032 -12.4613 -1.4755 24 1 6.2712 -12.5361 -2.8944 25 1 7.8949 -13.3242 -1.2747 26 1 5.6005 -12.9281 -0.5972 27 6 4.3041 -8.0339 0.0792 28 6 4.3185 -2.9747 -0.4005 29 6 4.7918 -1.5691 -0.0043 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5143 32 1 -0.3633 0.8903 0.5134 33 1 4.4171 1.3395 -0.0003 34 1 1.5772 -2.7942 -0.9964 35 1 1.0704 -2.6452 0.7062 36 1 4.5746 -5.4855 0.8348 37 1 1.3190 -6.8000 1.0829 38 1 0.7264 -9.1828 0.9351 39 1 2.4141 -10.8343 0.2456 40 1 9.0470 -10.8547 -1.5620 41 1 5.3065 -7.7120 -0.1613 42 1 5.1179 -3.6927 -0.2172 43 1 4.0544 -2.9857 -1.4580 44 1 5.2360 -1.5968 0.9906 45 1 5.5266 -1.2110 -0.7256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845221583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:59 Heat of formation + Delta-G solvation = 22.089538 kcal Electronic energy + Delta-G solvation = -28631.064663 eV Core-core repulsion = 24615.110192 eV Total energy + Delta-G solvation = -4015.954470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.66341 -40.59536 -39.05023 -37.09351 -36.32119 -34.54757 -33.60888 -32.44885 -31.62389 -30.34148 -29.53813 -28.78688 -26.70215 -25.42793 -25.01203 -23.02478 -22.06719 -21.89128 -21.04957 -20.01973 -19.27798 -18.19782 -17.91494 -17.41227 -16.72836 -16.06234 -15.86618 -15.53024 -15.20242 -14.81539 -14.75914 -14.34950 -14.23004 -14.07948 -13.93313 -13.85314 -13.55251 -13.27057 -13.21527 -13.19116 -12.66614 -12.43433 -12.31473 -12.22087 -12.15116 -11.80130 -11.58051 -11.40718 -11.28084 -11.02889 -10.87334 -10.36249 -10.15313 -10.09386 -9.82032 -9.70271 -9.57655 -8.93849 -8.41361 -7.95353 -7.42390 -6.50939 -4.18385 1.70713 1.79505 2.14379 2.36695 2.54238 2.90826 3.03767 3.16577 3.20906 3.34721 3.86293 4.14826 4.16286 4.17124 4.25187 4.39326 4.42179 4.65746 4.76647 4.79947 4.82018 4.90395 4.99899 5.03475 5.15694 5.23198 5.26730 5.40142 5.42809 5.50228 5.54430 5.65805 5.68498 5.78279 5.83313 6.01913 6.06739 6.15359 6.35560 6.53939 6.73537 6.75794 6.95984 7.06033 7.07673 7.38828 7.52421 7.65991 7.87956 7.91853 8.02736 8.84417 9.45759 10.56536 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.002317 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.580002 B =12084.015329 C =13339.592609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.208 3.792 3 N -0.495 5.495 4 C -0.022 4.022 5 C -0.030 4.030 6 N -0.451 5.451 7 C 0.124 3.876 8 C -0.119 4.119 9 H 0.111 0.889 10 C 0.522 3.478 11 O -0.518 6.518 12 N -0.663 5.663 13 C 0.177 3.823 14 C -0.198 4.198 15 C -0.064 4.064 16 C -0.198 4.198 17 C 0.174 3.826 18 O -0.214 6.214 19 C -0.391 4.391 20 H 0.105 0.895 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.242 4.242 28 C -0.120 4.120 29 C -0.043 4.043 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.169 0.831 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.409 0.591 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.280 0.720 41 H 0.137 0.863 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.075 16.434 4.443 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.053 4.053 3 N -0.214 5.214 4 C -0.169 4.169 5 C -0.144 4.144 6 N -0.135 5.135 7 C 0.001 3.999 8 C -0.140 4.140 9 H 0.129 0.871 10 C 0.308 3.692 11 O -0.393 6.393 12 N -0.308 5.308 13 C 0.084 3.916 14 C -0.218 4.218 15 C -0.083 4.083 16 C -0.218 4.218 17 C 0.121 3.879 18 O -0.119 6.119 19 C -0.467 4.467 20 H 0.122 0.878 21 C -0.139 4.139 22 N -0.516 5.516 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.263 4.263 28 C -0.158 4.158 29 C -0.081 4.081 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.186 0.814 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.245 0.755 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.154 0.846 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.980 16.616 4.016 20.317 hybrid contribution 0.960 -1.320 -0.115 1.637 sum -10.020 15.295 3.902 18.697 Atomic orbital electron populations 1.20188 0.84932 1.03966 1.03609 1.23126 0.95646 0.81072 1.05499 1.70460 1.02009 1.27980 1.20989 1.21816 0.94830 0.91921 1.08334 1.21141 0.85593 0.95491 1.12129 1.45260 1.06428 1.07088 1.54696 1.21694 0.96869 0.76617 1.04688 1.21575 0.96945 0.92072 1.03452 0.87089 1.20169 0.84570 0.86936 0.77510 1.90754 1.23415 1.82400 1.42689 1.43432 1.16220 1.04751 1.66389 1.17388 0.94426 0.81414 0.98350 1.20543 0.95652 0.95998 1.09635 1.20530 0.98002 0.92133 0.97619 1.20270 0.91730 0.99936 1.09847 1.18816 0.89023 0.87760 0.92326 1.83621 1.18155 1.34180 1.75895 1.20708 0.80807 1.00400 1.44743 0.87799 1.24467 0.94030 0.99981 0.95441 1.69639 1.01365 1.37151 1.43442 0.86180 0.78502 0.82590 0.79664 1.19855 1.20721 1.18262 1.20934 1.01149 0.92745 1.11485 1.21734 0.96099 0.97539 1.00444 1.20222 0.93076 0.91504 1.03272 0.90116 0.90814 0.89195 0.81353 0.88366 0.88338 0.75501 0.86371 0.86356 0.86276 0.90971 0.84555 0.89502 0.90296 0.89561 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.24 36.01 0.37 -0.13 16 2 C 0.21 2.28 7.94 -155.74 -1.24 1.04 16 3 N -0.49 -6.32 11.27 -11.02 -0.12 -6.44 16 4 C -0.02 -0.24 11.84 -17.95 -0.21 -0.45 16 5 C -0.03 -0.29 6.57 -81.73 -0.54 -0.83 16 6 N -0.45 -4.56 3.13 -109.43 -0.34 -4.90 16 7 C 0.12 1.12 5.39 -3.92 -0.02 1.10 16 8 C -0.12 -1.02 2.53 -91.57 -0.23 -1.26 16 9 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 10 C 0.52 6.42 6.88 -10.99 -0.08 6.35 16 11 O -0.52 -8.07 13.63 5.55 0.08 -7.99 16 12 N -0.66 -8.68 5.21 -9.88 -0.05 -8.73 16 13 C 0.18 3.05 6.25 -83.72 -0.52 2.53 16 14 C -0.20 -3.38 8.64 -39.34 -0.34 -3.72 16 15 C -0.06 -1.07 10.03 -39.63 -0.40 -1.47 16 16 C -0.20 -3.78 9.99 -39.36 -0.39 -4.17 16 17 C 0.17 3.82 6.64 -39.14 -0.26 3.56 16 18 O -0.21 -5.40 8.58 0.04 0.00 -5.40 16 19 C -0.39 -10.52 9.90 30.89 0.31 -10.21 16 20 H 0.10 2.82 5.52 -52.49 -0.29 2.53 16 21 C 0.06 1.74 5.49 -17.52 -0.10 1.64 16 22 N -0.88 -24.44 13.96 55.48 0.77 -23.66 16 23 Si 0.91 21.01 28.62 -169.99 -4.86 16.14 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 27 C -0.24 -4.86 9.05 -39.21 -0.35 -5.21 16 28 C -0.12 -0.93 5.23 -26.40 -0.14 -1.07 16 29 C -0.04 -0.30 6.31 -27.61 -0.17 -0.47 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.43 7.59 -51.93 -0.39 0.04 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.10 0.97 7.81 -51.93 -0.41 0.57 16 35 H 0.10 0.80 7.72 -51.93 -0.40 0.40 16 36 H 0.41 4.20 7.99 -40.82 -0.33 3.87 16 37 H 0.12 1.94 6.53 -52.49 -0.34 1.60 16 38 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 40 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.14 2.82 5.71 -52.49 -0.30 2.52 16 42 H 0.09 0.59 7.20 -51.93 -0.37 0.21 16 43 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -32.85 372.00 -9.01 -41.86 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.77 Total: 6.29 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -4.32 Total: -12.77 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.26 Total: -43.74 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.40 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.86 Total: 16.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.85 -9.01 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845221583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.951 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds