Wall clock time and date at job start Sat Apr 11 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30792 * 125.72373 * 2 1 4 4 C 1.34425 * 109.31706 * 180.02562 * 3 2 1 5 5 C 1.33858 * 107.80302 * 0.02562 * 4 3 2 6 6 N 1.34411 * 125.72037 * 179.97438 * 2 1 3 7 7 C 1.46466 * 128.44613 * 359.81386 * 6 2 1 8 8 C 1.53276 * 108.69502 * 197.34181 * 7 6 2 9 9 H 1.08998 * 109.39820 * 69.28370 * 8 7 6 10 10 C 1.50700 * 109.43196 * 189.16580 * 8 7 6 11 11 O 1.21284 * 120.00335 * 0.23714 * 10 8 7 12 12 N 1.34778 * 119.99985 * 180.24231 * 10 8 7 13 13 C 1.39929 * 120.00161 * 174.56039 * 12 10 8 14 14 C 1.38959 * 120.03117 * 325.30205 * 13 12 10 15 15 C 1.38160 * 120.06480 * 179.97438 * 14 13 12 16 16 C 1.38170 * 120.13692 * 359.97438 * 15 14 13 17 17 C 1.38909 * 120.07059 * 0.02562 * 16 15 14 18 18 O 1.35759 * 120.03194 * 179.97438 * 17 16 15 19 19 C 1.34822 * 116.99757 * 185.62916 * 18 17 16 20 20 H 1.08000 * 120.00172 * 5.36450 * 19 18 17 21 21 C 1.38655 * 119.99979 * 185.35841 * 19 18 17 22 22 N 1.31555 * 119.99959 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99944 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47222 * 89.99709 * 23 21 19 25 25 H 1.48496 * 109.47172 * 210.00178 * 23 21 19 26 26 H 1.48501 * 109.47087 * 329.99635 * 23 21 19 27 27 C 1.38708 * 120.03523 * 145.27453 * 13 12 10 28 28 C 1.53118 * 109.70770 * 309.23706 * 8 7 6 29 29 C 1.50706 * 128.68519 * 179.90710 * 5 4 3 30 30 H 1.09000 * 109.46833 * 90.02491 * 1 2 3 31 31 H 1.08996 * 109.47585 * 210.02943 * 1 2 3 32 32 H 1.09006 * 109.46777 * 330.03248 * 1 2 3 33 33 H 1.08001 * 126.10006 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.59881 * 77.57684 * 7 6 2 35 35 H 1.09001 * 109.60148 * 317.10877 * 7 6 2 36 36 H 0.97004 * 120.00242 * 354.55872 * 12 10 8 37 37 H 1.07995 * 119.97494 * 359.69599 * 14 13 12 38 38 H 1.07998 * 119.93432 * 179.97438 * 15 14 13 39 39 H 1.08004 * 119.95966 * 179.97438 * 16 15 14 40 40 H 0.97009 * 119.99687 * 180.02562 * 22 21 19 41 41 H 1.07999 * 120.07352 * 359.97438 * 27 13 12 42 42 H 1.09003 * 109.49670 * 189.86159 * 28 8 7 43 43 H 1.09001 * 109.49742 * 309.95747 * 28 8 7 44 44 H 1.08994 * 109.74799 * 76.10084 * 29 5 4 45 45 H 1.09007 * 109.78264 * 315.40907 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5928 -0.6561 -0.0015 6 7 2.2918 -1.0913 0.0005 7 6 1.8921 -2.5003 0.0048 8 6 3.0925 -3.3501 0.4364 9 1 3.3039 -3.1693 1.4903 10 6 2.7736 -4.8087 0.2321 11 8 1.6962 -5.1367 -0.2180 12 7 3.6856 -5.7489 0.5497 13 6 3.3502 -7.1049 0.4680 14 6 2.0610 -7.5222 0.7758 15 6 1.7289 -8.8608 0.6950 16 6 2.6767 -9.7885 0.3075 17 6 3.9672 -9.3777 -0.0015 18 8 4.8980 -10.2899 -0.3816 19 6 6.1582 -9.8430 -0.5541 20 1 6.4075 -8.8215 -0.3073 21 6 7.1344 -10.6947 -1.0481 22 7 8.3642 -10.2588 -1.2159 23 14 6.7032 -12.4613 -1.4755 24 1 6.2712 -12.5361 -2.8944 25 1 7.8949 -13.3242 -1.2747 26 1 5.6005 -12.9281 -0.5972 27 6 4.3041 -8.0339 0.0792 28 6 4.3185 -2.9747 -0.4005 29 6 4.7918 -1.5691 -0.0043 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5143 32 1 -0.3633 0.8903 0.5134 33 1 4.4171 1.3395 -0.0003 34 1 1.5772 -2.7942 -0.9964 35 1 1.0704 -2.6452 0.7062 36 1 4.5746 -5.4855 0.8348 37 1 1.3190 -6.8000 1.0829 38 1 0.7264 -9.1828 0.9351 39 1 2.4141 -10.8343 0.2456 40 1 9.0470 -10.8547 -1.5620 41 1 5.3065 -7.7120 -0.1613 42 1 5.1179 -3.6927 -0.2172 43 1 4.0544 -2.9857 -1.4580 44 1 5.2360 -1.5968 0.9906 45 1 5.5266 -1.2110 -0.7256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845221583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:58 Heat of formation + Delta-G solvation = 2.664588 kcal Electronic energy + Delta-G solvation = -28631.906992 eV Core-core repulsion = 24615.110192 eV Total energy + Delta-G solvation = -4016.796799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.42428 -41.76244 -40.58225 -38.45925 -37.29881 -35.79780 -34.41872 -34.31393 -32.43786 -31.16253 -30.92592 -30.16676 -27.39365 -27.23753 -25.96871 -23.88221 -23.44514 -23.10636 -21.94289 -21.17791 -20.03225 -19.87856 -19.41070 -18.47213 -17.60709 -17.23702 -16.96519 -16.85242 -16.40564 -16.19311 -15.70728 -15.62546 -15.41193 -15.34149 -15.01898 -14.82611 -14.67213 -14.50553 -14.20148 -14.00990 -13.95089 -13.80130 -13.33453 -13.23415 -13.03591 -12.84437 -12.75180 -12.70723 -12.48954 -12.21104 -12.08264 -12.04677 -11.52636 -11.33760 -10.98239 -10.96210 -10.82007 -10.53031 -9.42961 -9.15706 -8.96513 -8.50039 -6.22222 0.32877 0.63070 1.04553 1.33122 1.35659 1.43629 1.52412 1.55049 2.06022 2.11459 2.28446 2.76636 3.07726 3.10104 3.13430 3.35843 3.48167 3.58574 3.74643 3.91460 4.08037 4.13191 4.19338 4.25670 4.29210 4.36383 4.39529 4.54148 4.58974 4.59745 4.67308 4.69819 4.79832 4.88833 4.90189 4.97372 5.02637 5.06850 5.32837 5.34934 5.41993 5.44235 5.61080 5.74901 5.80627 5.87494 6.17767 6.22244 6.33503 6.84903 6.95211 7.10152 7.58229 8.60954 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019074 B = 0.002317 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.580002 B =12084.015329 C =13339.592609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.195 3.805 3 N -0.531 5.531 4 C -0.045 4.045 5 C -0.031 4.031 6 N -0.453 5.453 7 C 0.125 3.875 8 C -0.104 4.104 9 H 0.135 0.865 10 C 0.527 3.473 11 O -0.548 6.548 12 N -0.659 5.659 13 C 0.182 3.818 14 C -0.190 4.190 15 C -0.053 4.053 16 C -0.202 4.202 17 C 0.139 3.861 18 O -0.241 6.241 19 C -0.397 4.397 20 H 0.086 0.914 21 C 0.013 3.987 22 N -0.920 5.920 23 Si 0.965 3.035 24 H -0.269 1.269 25 H -0.269 1.269 26 H -0.261 1.261 27 C -0.252 4.252 28 C -0.119 4.119 29 C -0.036 4.036 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.183 0.817 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.423 0.577 37 H 0.134 0.866 38 H 0.159 0.841 39 H 0.132 0.868 40 H 0.284 0.716 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.796 16.703 5.352 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.067 4.067 3 N -0.252 5.252 4 C -0.192 4.192 5 C -0.145 4.145 6 N -0.137 5.137 7 C 0.003 3.997 8 C -0.126 4.126 9 H 0.152 0.848 10 C 0.315 3.685 11 O -0.425 6.425 12 N -0.304 5.304 13 C 0.088 3.912 14 C -0.210 4.210 15 C -0.072 4.072 16 C -0.222 4.222 17 C 0.089 3.911 18 O -0.148 6.148 19 C -0.473 4.473 20 H 0.104 0.896 21 C -0.186 4.186 22 N -0.560 5.560 23 Si 0.787 3.213 24 H -0.194 1.194 25 H -0.193 1.193 26 H -0.185 1.185 27 C -0.274 4.274 28 C -0.157 4.157 29 C -0.074 4.074 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.200 0.800 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.261 0.739 37 H 0.151 0.849 38 H 0.177 0.823 39 H 0.150 0.850 40 H 0.094 0.906 41 H 0.139 0.861 42 H 0.117 0.883 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.712 16.929 4.944 21.740 hybrid contribution 1.254 -1.164 -0.320 1.740 sum -11.458 15.765 4.624 20.030 Atomic orbital electron populations 1.20311 0.82942 1.04959 1.04374 1.23727 0.96947 0.80975 1.05024 1.70433 1.03082 1.29297 1.22355 1.22187 0.94898 0.92945 1.09155 1.21568 0.86315 0.95636 1.10973 1.45347 1.06542 1.07229 1.54549 1.21702 0.97338 0.76148 1.04506 1.21507 0.97146 0.88946 1.04965 0.84771 1.20730 0.83642 0.88004 0.76095 1.90740 1.24729 1.83089 1.43922 1.43440 1.17362 1.03301 1.66317 1.17432 0.93954 0.82907 0.96921 1.20903 0.95580 0.96645 1.07903 1.20986 0.99189 0.91459 0.95523 1.20561 0.90835 1.01307 1.09468 1.19377 0.89797 0.88377 0.93586 1.83566 1.17745 1.35211 1.78283 1.20685 0.82104 0.99826 1.44677 0.89646 1.25212 0.93955 1.03724 0.95713 1.69713 1.02244 1.38605 1.45481 0.85294 0.78422 0.78264 0.79275 1.19446 1.19349 1.18533 1.20918 1.01224 0.92964 1.12285 1.21748 0.95998 0.98445 0.99496 1.20313 0.92165 0.90116 1.04823 0.89397 0.89237 0.88765 0.79992 0.89391 0.87190 0.73855 0.84856 0.82327 0.84995 0.90617 0.86077 0.88273 0.91604 0.87564 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.24 71.24 0.73 -0.17 16 2 C 0.20 4.06 7.94 138.24 1.10 5.15 16 3 N -0.53 -13.31 11.27 -188.77 -2.13 -15.43 16 4 C -0.05 -0.96 11.84 83.30 0.99 0.03 16 5 C -0.03 -0.55 6.57 40.73 0.27 -0.29 16 6 N -0.45 -8.41 3.13 -500.14 -1.57 -9.98 16 7 C 0.13 2.01 5.39 86.48 0.47 2.47 16 8 C -0.10 -1.52 2.53 -11.41 -0.03 -1.55 16 9 H 0.13 1.44 8.11 -2.39 -0.02 1.42 16 10 C 0.53 11.70 6.88 87.66 0.60 12.30 16 11 O -0.55 -15.81 13.63 -3.04 -0.04 -15.85 16 12 N -0.66 -15.92 5.21 -303.56 -1.58 -17.50 16 13 C 0.18 6.00 6.25 38.13 0.24 6.24 16 14 C -0.19 -5.94 8.64 22.42 0.19 -5.75 16 15 C -0.05 -1.61 10.03 22.24 0.22 -1.39 16 16 C -0.20 -7.39 9.99 22.41 0.22 -7.17 16 17 C 0.14 6.14 6.64 22.56 0.15 6.29 16 18 O -0.24 -12.46 8.58 -22.76 -0.20 -12.66 16 19 C -0.40 -22.13 9.90 67.92 0.67 -21.46 16 20 H 0.09 4.90 5.52 -2.91 -0.02 4.88 16 21 C 0.01 0.71 5.49 84.83 0.47 1.18 16 22 N -0.92 -52.71 13.96 21.61 0.30 -52.41 16 23 Si 0.96 43.89 28.62 68.60 1.96 45.85 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 27 C -0.25 -10.22 9.05 22.51 0.20 -10.02 16 28 C -0.12 -1.56 5.23 30.81 0.16 -1.40 16 29 C -0.04 -0.41 6.31 30.02 0.19 -0.23 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 0.87 7.59 -2.39 -0.02 0.85 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.09 1.61 7.81 -2.39 -0.02 1.60 16 35 H 0.11 1.51 7.72 -2.39 -0.02 1.49 16 36 H 0.42 7.85 7.99 -92.71 -0.74 7.11 16 37 H 0.13 3.87 6.53 -2.91 -0.02 3.85 16 38 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.28 15.01 8.31 -92.70 -0.77 14.24 16 41 H 0.12 5.23 5.71 -2.91 -0.02 5.21 16 42 H 0.10 1.08 7.20 -2.39 -0.02 1.07 16 43 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 44 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -73.11 372.00 3.89 -69.22 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.30 Total: 24.51 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: 6.84 Total: -15.74 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -4.97 Total: -95.32 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.24 Total: -28.51 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.96 Total: 45.85 kcal Total: -73.11 3.89 -69.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845221583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.883 kcal (2) G-P(sol) polarization free energy of solvation -73.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds