Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99858 * 2 1 4 4 C 1.53002 * 109.46845 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47533 * 59.99829 * 4 3 2 6 6 C 1.53007 * 109.46918 * 299.99748 * 4 3 2 7 7 C 1.53000 * 109.46959 * 180.02562 * 4 3 2 8 8 N 1.46503 * 109.47132 * 179.97438 * 7 4 3 9 9 S 1.65597 * 119.99916 * 164.99803 * 8 7 4 10 10 O 1.42100 * 106.40221 * 311.46434 * 9 8 7 11 11 O 1.42100 * 106.40331 * 178.54440 * 9 8 7 12 12 C 1.76198 * 107.21897 * 65.00477 * 9 8 7 13 13 C 1.38233 * 120.00076 * 90.00038 * 12 9 8 14 14 C 1.38237 * 120.00111 * 179.97438 * 13 12 9 15 15 C 1.38231 * 119.99929 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99766 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47151 * 90.00279 * 16 15 14 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99694 * 180.27762 * 17 16 15 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47266 * 60.00049 * 21 19 17 23 23 H 1.48504 * 109.46970 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47383 * 299.99456 * 21 19 17 25 25 C 1.38233 * 120.00119 * 0.25187 * 15 14 13 26 26 C 1.38231 * 119.99963 * 269.97887 * 12 9 8 27 27 H 1.09002 * 109.47324 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47465 * 300.00047 * 1 2 3 29 29 H 1.09004 * 109.47255 * 60.00141 * 1 2 3 30 30 H 1.09002 * 109.47161 * 60.00386 * 3 2 1 31 31 H 1.08995 * 109.47336 * 299.99723 * 3 2 1 32 32 H 1.08996 * 109.47716 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.46981 * 300.00471 * 5 4 3 34 34 H 1.09003 * 109.46876 * 59.99958 * 5 4 3 35 35 H 1.08994 * 109.46985 * 300.00045 * 6 4 3 36 36 H 1.08995 * 109.47069 * 60.00731 * 6 4 3 37 37 H 1.09006 * 109.46916 * 180.02562 * 6 4 3 38 38 H 1.09002 * 109.47144 * 60.00161 * 7 4 3 39 39 H 1.08995 * 109.47238 * 299.99568 * 7 4 3 40 40 H 0.96993 * 120.00102 * 345.00526 * 8 7 4 41 41 H 1.08000 * 120.00181 * 359.97438 * 13 12 9 42 42 H 1.08003 * 119.99517 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.47088 * 329.99418 * 16 15 14 44 44 H 1.09007 * 109.46560 * 209.99923 * 16 15 14 45 45 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 46 46 H 1.08002 * 120.00409 * 179.72430 * 25 15 14 47 47 H 1.08004 * 120.00378 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9864 0.4256 -1.2501 6 6 3.9873 0.4251 1.2484 7 6 4.1577 2.5824 0.0000 8 7 5.6182 2.4667 0.0000 9 16 6.5529 3.7824 -0.3706 10 8 6.0138 4.3344 -1.5639 11 8 7.9047 3.3608 -0.2509 12 6 6.2917 4.9808 0.8943 13 6 7.0948 4.9846 2.0194 14 6 6.8902 5.9252 3.0116 15 6 5.8820 6.8616 2.8789 16 6 5.6586 7.8865 3.9609 17 6 6.4890 9.1106 3.6725 18 1 7.1162 9.1429 2.7938 19 6 6.4528 10.1867 4.5336 20 7 5.6894 10.1472 5.6037 21 14 7.4881 11.7009 4.1802 22 1 7.0921 12.2765 2.8698 23 1 7.2716 12.7090 5.2490 24 1 8.9232 11.3212 4.1408 25 6 5.0752 6.8542 1.7566 26 6 5.2838 5.9175 0.7615 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 5.0730 0.3399 -1.2508 33 1 3.5430 -0.5701 -1.2501 34 1 3.6645 0.9667 -2.1399 35 1 3.6661 0.9659 2.1385 36 1 3.5441 -0.5706 1.2483 37 1 5.0740 0.3394 1.2481 38 1 3.8364 3.1227 0.8905 39 1 3.8359 3.1238 -0.8895 40 1 6.0376 1.6195 0.2170 41 1 7.8823 4.2528 2.1233 42 1 7.5175 5.9278 3.8907 43 1 5.9507 7.4678 4.9239 44 1 4.6041 8.1612 3.9889 45 1 5.6642 10.9042 6.2097 46 1 4.2846 7.5830 1.6549 47 1 4.6567 5.9150 -0.1179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885200621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = -116.552261 kcal Electronic energy + Delta-G solvation = -27630.767574 eV Core-core repulsion = 23711.952344 eV Total energy + Delta-G solvation = -3918.815230 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.27295 -38.81552 -37.22204 -36.92292 -35.76794 -33.69765 -33.11145 -31.57147 -30.59296 -27.76824 -27.51903 -27.43910 -26.79001 -24.93381 -23.73897 -22.36021 -20.91822 -19.63212 -19.42897 -17.92138 -17.38040 -16.88835 -16.45657 -16.22261 -15.97742 -15.47887 -15.20571 -15.00839 -14.77338 -14.38808 -14.32792 -13.81322 -13.73450 -13.59471 -13.22998 -13.12175 -12.83463 -12.26677 -12.19185 -12.11821 -12.08409 -11.99860 -11.93396 -11.91091 -11.71491 -11.50001 -11.23243 -11.06033 -10.96452 -10.91522 -10.90220 -10.54427 -10.49317 -10.00118 -9.81709 -9.72014 -9.56187 -8.60686 -8.54866 -8.40407 -6.18406 -4.23560 0.49436 1.31325 1.77746 3.00335 3.25188 3.29368 3.32816 3.44556 3.75450 4.09992 4.35565 4.38310 4.39650 4.44817 4.61225 4.93433 4.96870 4.99021 5.10482 5.15072 5.19215 5.20397 5.22295 5.23534 5.31444 5.43358 5.50797 5.52449 5.68412 5.70607 5.73563 5.78660 5.88227 5.89626 6.05693 6.06827 6.23288 6.31388 6.49039 6.77133 6.81416 6.82638 6.89363 7.27415 7.41320 7.57253 7.76468 8.11770 8.80978 9.41466 10.91596 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.002558 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.445576 B =10941.511585 C =12062.671623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.070 3.930 4 C -0.067 4.067 5 C -0.139 4.139 6 C -0.140 4.140 7 C 0.126 3.874 8 N -1.116 6.116 9 S 2.699 3.301 10 O -0.964 6.964 11 O -0.966 6.966 12 C -0.704 4.704 13 C -0.021 4.021 14 C -0.146 4.146 15 C 0.027 3.973 16 C 0.040 3.960 17 C -0.518 4.518 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.146 4.146 26 C -0.025 4.025 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.416 0.584 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.265 0.735 46 H 0.128 0.872 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 -20.642 -10.242 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.007 4.007 4 C -0.069 4.069 5 C -0.197 4.197 6 C -0.198 4.198 7 C 0.000 4.000 8 N -0.877 5.877 9 S 2.792 3.208 10 O -0.954 6.954 11 O -0.956 6.956 12 C -0.793 4.793 13 C -0.041 4.041 14 C -0.165 4.165 15 C 0.026 3.974 16 C 0.003 3.997 17 C -0.556 4.556 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.165 4.165 26 C -0.045 4.045 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.252 0.748 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.074 0.926 46 H 0.146 0.854 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.698 -20.455 -10.868 24.409 hybrid contribution 0.184 1.197 0.735 1.417 sum -7.514 -19.258 -10.133 23.022 Atomic orbital electron populations 1.22741 0.81013 1.02700 1.00087 1.87847 1.19528 1.27620 1.95426 1.22501 0.92593 0.84888 1.00750 1.20709 0.93306 0.95078 0.97806 1.21809 1.01242 1.00623 0.95988 1.21824 1.00997 1.00848 0.96084 1.21246 0.79089 0.96976 1.02708 1.55561 1.15862 1.27398 1.88834 1.01524 0.72559 0.72744 0.74018 1.93555 1.79865 1.78455 1.43532 1.93570 1.33020 1.81771 1.87242 1.30313 1.10421 1.20201 1.18384 1.20770 0.95147 0.96986 0.91158 1.21252 0.99375 0.96036 0.99813 1.21117 0.89502 0.91588 0.95159 1.18534 0.98469 0.91351 0.91346 1.20928 1.26342 0.99054 1.09294 0.92343 1.24999 0.95535 0.98726 0.94860 1.69933 1.38627 1.31626 1.12817 0.86537 0.80733 0.82065 0.78038 1.20028 1.21102 1.20025 1.21244 1.01531 0.99402 0.94283 1.20781 0.93780 0.92423 0.97485 0.89690 0.94009 0.94063 0.92717 0.92790 0.92375 0.91580 0.92441 0.92302 0.91446 0.92478 0.91080 0.89903 0.74819 0.85261 0.85361 0.94732 0.94739 0.92560 0.85368 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.20 9.35 -35.23 -0.33 -3.53 16 3 C 0.07 0.52 4.81 37.16 0.18 0.70 16 4 C -0.07 -0.52 0.62 -154.51 -0.10 -0.62 16 5 C -0.14 -1.08 8.16 37.15 0.30 -0.78 16 6 C -0.14 -1.06 8.16 37.16 0.30 -0.75 16 7 C 0.13 1.09 5.11 -4.04 -0.02 1.07 16 8 N -1.12 -10.70 5.33 -10.61 -0.06 -10.76 16 9 S 2.70 36.23 5.74 -107.50 -0.62 35.61 16 10 O -0.96 -15.10 16.75 -57.17 -0.96 -16.06 16 11 O -0.97 -15.30 17.28 -57.17 -0.99 -16.29 16 12 C -0.70 -10.77 5.95 -39.59 -0.24 -11.01 16 13 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 14 C -0.15 -2.68 9.70 -39.58 -0.38 -3.06 16 15 C 0.03 0.54 5.07 -104.62 -0.53 0.01 16 16 C 0.04 0.96 5.10 -29.03 -0.15 0.82 16 17 C -0.52 -13.98 9.09 -34.44 -0.31 -14.30 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 21 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 25 C -0.15 -2.64 9.70 -39.58 -0.38 -3.02 16 26 C -0.03 -0.40 9.52 -39.58 -0.38 -0.77 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.43 7.20 -51.93 -0.37 0.06 16 33 H 0.07 0.52 7.68 -51.93 -0.40 0.12 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.53 7.68 -51.93 -0.40 0.13 16 37 H 0.06 0.39 6.60 -51.93 -0.34 0.05 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.70 7.75 -51.93 -0.40 0.30 16 40 H 0.42 3.26 6.47 -34.46 -0.22 3.03 16 41 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 42 H 0.13 2.25 8.06 -52.48 -0.42 1.82 16 43 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 44 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 47 H 0.13 1.71 7.62 -52.48 -0.40 1.31 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -32.97 397.68 -9.85 -42.82 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.55 Total: 0.42 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: -1.07 Total: -29.56 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.68 Total: -35.45 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -2.28 Total: -35.88 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 36.23 SS G_CDS: -0.62 Total: 35.61 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.97 -9.85 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885200621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.729 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds