Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46557 * 233.46296 * 3 2 1 5 5 H 1.09001 * 109.52825 * 54.92300 * 4 3 2 6 6 C 1.53049 * 109.49535 * 175.00322 * 4 3 2 7 7 C 1.53038 * 109.53703 * 181.31377 * 6 4 3 8 8 C 1.53192 * 109.34202 * 298.61876 * 7 6 4 9 9 N 1.46994 * 108.73892 * 54.62053 * 8 7 6 10 10 C 1.34778 * 120.61407 * 126.38437 * 9 8 7 11 11 O 1.21362 * 119.99990 * 172.91233 * 10 9 8 12 12 C 1.49366 * 120.00021 * 352.92029 * 10 9 8 13 13 O 1.21353 * 120.00097 * 353.66157 * 12 10 9 14 14 N 1.34780 * 120.00177 * 173.65623 * 12 10 9 15 15 C 1.39112 * 120.00017 * 184.58211 * 14 12 10 16 16 C 1.39711 * 119.57290 * 175.92785 * 15 14 12 17 17 C 1.38652 * 119.48463 * 179.72465 * 16 15 14 18 18 C 1.38344 * 118.67818 * 0.53071 * 17 16 15 19 19 C 1.40593 * 119.13084 * 359.73304 * 18 17 16 20 20 C 1.41336 * 119.78540 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99641 * 0.02562 * 20 19 18 22 22 C 1.40030 * 120.00383 * 180.02562 * 20 19 18 23 23 N 1.30742 * 119.99827 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00321 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47104 * 90.00580 * 24 22 20 26 26 H 1.48497 * 109.47313 * 210.00151 * 24 22 20 27 27 H 1.48502 * 109.47136 * 330.00504 * 24 22 20 28 28 N 1.31931 * 119.57964 * 356.19232 * 15 14 12 29 29 C 1.46926 * 118.75503 * 306.41520 * 9 8 7 30 30 H 4.44643 * 5.63346 * 179.97438 * 4 1 2 31 31 H 1.08994 * 109.47313 * 113.46471 * 3 2 1 32 32 H 1.08998 * 109.47698 * 353.45807 * 3 2 1 33 33 H 1.08998 * 109.45710 * 61.29736 * 6 4 3 34 34 H 1.08994 * 109.45887 * 301.33593 * 6 4 3 35 35 H 1.09000 * 109.49811 * 58.58824 * 7 6 4 36 36 H 1.08999 * 109.49693 * 178.64658 * 7 6 4 37 37 H 1.09003 * 109.58658 * 174.43652 * 8 7 6 38 38 H 1.08996 * 109.58382 * 294.86618 * 8 7 6 39 39 H 0.97006 * 119.99395 * 4.57646 * 14 12 10 40 40 H 1.07997 * 120.25485 * 359.97438 * 16 15 14 41 41 H 1.08007 * 120.66024 * 180.28401 * 17 16 15 42 42 H 1.07995 * 120.43759 * 179.74911 * 18 17 16 43 43 H 0.96999 * 120.00454 * 179.97438 * 23 22 20 44 44 H 1.09004 * 109.58517 * 293.81610 * 29 9 8 45 45 H 1.09004 * 109.70155 * 173.46566 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 0.8597 1.1591 5 1 2.7204 0.5057 2.0937 6 6 4.6808 0.7610 1.2360 7 6 5.1888 1.5938 2.4152 8 6 4.8103 3.0625 2.1994 9 7 3.3594 3.1488 1.9794 10 6 2.5995 3.9726 2.7280 11 8 1.4279 4.1328 2.4550 12 6 3.1994 4.6885 3.8936 13 8 4.3370 4.4424 4.2369 14 7 2.4772 5.6080 4.5641 15 6 3.0655 6.3428 5.5884 16 6 2.3351 7.3525 6.2201 17 6 2.9214 8.0799 7.2446 18 6 4.2250 7.7881 7.6043 19 6 4.9091 6.7639 6.9264 20 6 6.2415 6.4546 7.2822 21 1 6.7307 7.0041 8.0729 22 6 6.9274 5.4357 6.6097 23 7 6.3354 4.7708 5.6522 24 14 8.6886 5.0275 7.0795 25 1 8.6897 3.9879 8.1400 26 1 9.4138 4.5192 5.8875 27 1 9.3624 6.2506 7.5847 28 7 4.3078 6.0809 5.9472 29 6 2.7533 2.3198 0.9286 30 1 -1.0502 0.0000 -0.0004 31 1 3.0091 0.4100 -0.9426 32 1 3.0099 -1.0201 0.1171 33 1 5.1162 1.1383 0.3107 34 1 4.9707 -0.2804 1.3753 35 1 4.7346 1.2328 3.3379 36 1 6.2728 1.5038 2.4839 37 1 5.0821 3.6432 3.0809 38 1 5.3357 3.4508 1.3270 39 1 1.5471 5.7574 4.3324 40 1 1.3204 7.5619 5.9155 41 1 2.3726 8.8615 7.7491 42 1 4.7107 8.3396 8.3956 43 1 6.8105 4.0653 5.1861 44 1 3.1111 2.6477 -0.0474 45 1 1.6678 2.4107 0.9693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890350791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = 55.705349 kcal Electronic energy + Delta-G solvation = -29813.224176 eV Core-core repulsion = 25798.727397 eV Total energy + Delta-G solvation = -4014.496779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.62591 -39.02241 -37.85507 -37.26461 -35.13658 -34.19530 -33.16451 -32.52208 -31.22559 -30.41460 -29.27191 -27.45404 -26.18604 -25.57239 -23.60836 -22.56064 -21.73889 -21.07173 -20.09064 -19.21330 -18.24102 -17.86926 -16.85236 -16.67457 -16.09644 -15.51060 -15.32428 -14.75559 -14.69719 -14.60529 -14.51237 -14.24328 -13.82306 -13.71653 -13.38292 -13.31869 -12.99633 -12.90531 -12.73395 -12.26938 -12.03635 -12.02309 -11.47165 -11.26073 -11.22856 -11.02777 -11.00200 -10.72011 -10.61737 -10.54812 -10.45090 -10.27258 -10.21848 -10.00567 -9.83419 -9.12819 -8.65447 -8.51837 -8.06688 -7.31952 -7.10376 -6.26297 -4.48146 1.86432 2.63582 2.69346 2.75718 2.79779 3.05567 3.11690 3.14302 3.21354 3.88823 3.90893 3.99267 4.16123 4.62426 4.68964 4.75970 4.83365 4.89063 5.07717 5.23412 5.34395 5.40260 5.52201 5.58893 5.62872 5.75545 5.84315 5.93522 5.96648 5.98193 6.03511 6.05581 6.26952 6.37357 6.44317 6.53757 6.57883 6.76682 6.79575 7.17948 7.33628 7.43594 7.48241 7.51224 7.73376 7.82662 8.03350 8.14474 8.34726 8.60027 8.89671 8.97902 10.10057 10.37430 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012812 B = 0.003575 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.962986 B = 7830.027322 C = 9808.570691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 C -0.005 4.005 4 C -0.097 4.097 5 H 0.079 0.921 6 C -0.116 4.116 7 C -0.127 4.127 8 C 0.042 3.958 9 N -0.582 5.582 10 C 0.508 3.492 11 O -0.537 6.537 12 C 0.473 3.527 13 O -0.377 6.377 14 N -0.635 5.635 15 C 0.367 3.633 16 C -0.347 4.347 17 C -0.036 4.036 18 C -0.299 4.299 19 C 0.271 3.729 20 C -0.423 4.423 21 H 0.083 0.917 22 C 0.061 3.939 23 N -0.664 5.664 24 Si 0.898 3.102 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.264 1.264 28 N -0.474 5.474 29 C 0.114 3.886 30 H 0.215 0.785 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.171 0.829 38 H 0.058 0.942 39 H 0.412 0.588 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.068 0.932 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 -9.091 -10.721 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.188 4.188 3 C -0.042 4.042 4 C -0.116 4.116 5 H 0.097 0.903 6 C -0.154 4.154 7 C -0.166 4.166 8 C -0.078 4.078 9 N -0.315 5.315 10 C 0.292 3.708 11 O -0.414 6.414 12 C 0.251 3.749 13 O -0.242 6.242 14 N -0.282 5.282 15 C 0.129 3.871 16 C -0.373 4.373 17 C -0.060 4.060 18 C -0.322 4.322 19 C 0.146 3.854 20 C -0.453 4.453 21 H 0.101 0.899 22 C -0.167 4.167 23 N -0.283 5.283 24 Si 0.722 3.278 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.188 1.188 28 N -0.193 5.193 29 C -0.009 4.009 30 H 0.232 0.768 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.187 0.813 38 H 0.076 0.924 39 H 0.248 0.752 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.464 -10.053 -11.243 15.282 hybrid contribution -0.525 0.405 0.300 0.727 sum -2.989 -9.648 -10.943 14.892 Atomic orbital electron populations 1.24913 0.96003 1.00874 1.00662 1.23078 0.94552 1.00553 1.00658 1.18755 0.84847 1.01126 0.99453 1.21517 0.96633 0.94741 0.98721 0.90258 1.21638 0.93819 1.00504 0.99430 1.21814 1.01358 0.95166 0.98228 1.23470 0.77844 0.98991 1.07492 1.47942 1.09309 1.40304 1.33993 1.20665 0.86198 0.80312 0.83660 1.90686 1.16677 1.63532 1.70495 1.20189 0.87621 0.82461 0.84646 1.90715 1.14353 1.57390 1.61712 1.43034 1.14900 1.36823 1.33476 1.18547 0.91848 0.89050 0.87671 1.20516 1.01098 1.07142 1.08571 1.20589 0.94518 0.96321 0.94591 1.21657 0.96416 1.06500 1.07675 1.18356 0.92891 0.87191 0.86916 1.19584 0.95601 1.14410 1.15720 0.89869 1.26135 0.99496 0.96166 0.94931 1.70300 1.34558 1.11780 1.11682 0.86486 0.82806 0.79591 0.78894 1.19647 1.20225 1.18778 1.68622 1.05361 1.28340 1.16962 1.21702 1.00004 0.88943 0.90227 0.76767 0.89392 0.89174 0.91645 0.91610 0.91390 0.90508 0.81302 0.92353 0.75176 0.88713 0.88352 0.88361 0.91723 0.91422 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.12 19.25 29.55 0.57 -1.55 16 2 C -0.19 -2.01 12.43 -37.12 -0.46 -2.48 16 3 C 0.00 -0.04 5.19 -29.52 -0.15 -0.19 16 4 C -0.10 -1.01 2.31 -90.50 -0.21 -1.22 16 5 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 6 C -0.12 -1.10 5.17 -26.69 -0.14 -1.24 16 7 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 8 C 0.04 0.61 6.27 -3.67 -0.02 0.59 16 9 N -0.58 -8.88 2.97 -173.25 -0.52 -9.39 16 10 C 0.51 9.17 7.74 -11.62 -0.09 9.08 16 11 O -0.54 -10.26 15.94 5.49 0.09 -10.17 16 12 C 0.47 9.67 7.73 -11.62 -0.09 9.58 16 13 O -0.38 -8.48 8.84 5.49 0.05 -8.43 16 14 N -0.63 -13.08 5.37 -11.83 -0.06 -13.14 16 15 C 0.37 8.78 7.43 -155.09 -1.15 7.63 16 16 C -0.35 -7.70 9.95 -38.88 -0.39 -8.09 16 17 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 18 C -0.30 -7.27 9.83 -38.65 -0.38 -7.65 16 19 C 0.27 7.30 6.55 -85.00 -0.56 6.74 16 20 C -0.42 -11.03 9.14 -37.73 -0.34 -11.38 16 21 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 22 C 0.06 1.51 5.50 -17.34 -0.10 1.41 16 23 N -0.66 -16.74 8.98 55.55 0.50 -16.24 16 24 Si 0.90 18.10 29.56 -169.99 -5.02 13.08 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 28 N -0.47 -12.66 5.73 -10.28 -0.06 -12.72 16 29 C 0.11 1.44 5.40 -3.71 -0.02 1.42 16 30 H 0.22 1.53 7.80 -54.08 -0.42 1.11 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.17 3.06 3.78 -56.77 -0.21 2.85 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.41 7.37 8.18 -40.82 -0.33 7.03 16 40 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 43 H 0.27 6.25 8.29 -40.82 -0.34 5.91 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.31 6.50 -51.93 -0.34 0.97 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -30.28 374.69 -9.40 -39.68 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.93 Total: 11.92 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -4.09 Total: -0.22 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.14 Total: -51.50 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.14 Total: -18.61 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.28 -9.40 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890350791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.385 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds