Wall clock time and date at job start Sat Apr 11 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32434 * 118.53826 * 2 1 4 4 C 1.32320 * 121.54034 * 179.97438 * 3 2 1 5 5 O 1.35284 * 120.87589 * 180.02562 * 4 3 2 6 6 C 1.41586 * 118.24989 * 0.02562 * 4 3 2 7 7 C 1.40084 * 121.89744 * 180.02562 * 6 4 3 8 8 C 1.36075 * 119.86015 * 179.69274 * 7 6 4 9 9 C 1.40422 * 120.78118 * 0.52064 * 8 7 6 10 10 C 1.47993 * 119.71527 * 179.74883 * 9 8 7 11 11 O 1.21534 * 119.99842 * 179.72832 * 10 9 8 12 12 N 1.34773 * 120.00153 * 359.72238 * 10 9 8 13 13 C 1.46500 * 119.99894 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.01868 * 325.70649 * 13 12 10 15 15 C 1.53873 * 110.03147 * 87.09634 * 13 12 10 16 16 C 1.54269 * 106.59646 * 119.33268 * 15 13 12 17 17 C 1.54882 * 104.19831 * 23.61137 * 16 15 13 18 18 H 1.08994 * 110.75597 * 80.55637 * 17 16 15 19 19 C 1.50702 * 110.75854 * 203.74430 * 17 16 15 20 20 H 1.08003 * 120.00527 * 118.54176 * 19 17 16 21 21 C 1.37878 * 119.99656 * 298.54724 * 19 17 16 22 22 N 1.31514 * 120.00160 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 119.99758 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46921 * 60.00069 * 23 21 19 25 25 H 1.48509 * 109.46925 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47372 * 299.99774 * 23 21 19 27 27 C 1.54273 * 110.07287 * 204.28551 * 13 12 10 28 28 C 1.38549 * 120.56744 * 359.47635 * 9 8 7 29 29 C 1.40128 * 119.36229 * 0.25319 * 28 9 8 30 30 N 1.31117 * 118.53710 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46666 * 270.01795 * 1 2 3 32 32 H 1.08993 * 109.47191 * 30.02060 * 1 2 3 33 33 H 1.08997 * 109.47072 * 150.02410 * 1 2 3 34 34 H 0.96703 * 113.99251 * 90.00566 * 5 4 3 35 35 H 1.08003 * 120.07170 * 359.97438 * 7 6 4 36 36 H 1.07995 * 119.61189 * 180.24602 * 8 7 6 37 37 H 0.97002 * 120.00266 * 0.02562 * 12 10 9 38 38 H 1.08996 * 110.03511 * 238.61506 * 15 13 12 39 39 H 1.09002 * 110.03347 * 0.04582 * 15 13 12 40 40 H 1.09000 * 110.48429 * 142.29450 * 16 15 13 41 41 H 1.09001 * 110.48672 * 264.92943 * 16 15 13 42 42 H 0.97004 * 120.00181 * 179.97438 * 22 21 19 43 43 H 1.09001 * 110.48533 * 335.76640 * 27 13 12 44 44 H 1.08999 * 110.48202 * 98.40568 * 27 13 12 45 45 H 1.07994 * 120.31990 * 180.27330 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1397 1.1634 0.0000 4 6 3.4611 1.2327 0.0005 5 8 4.0936 2.4286 0.0010 6 6 4.1956 0.0223 0.0005 7 6 5.5964 0.0065 0.0015 8 6 6.2605 -1.1811 0.0078 9 6 5.5584 -2.3972 0.0023 10 6 6.3047 -3.6752 0.0037 11 8 5.7022 -4.7306 0.0040 12 7 7.6524 -3.6686 0.0046 13 6 8.3911 -4.9337 0.0065 14 1 7.8481 -5.6819 0.5841 15 6 8.5945 -5.4275 -1.4366 16 6 10.1182 -5.5009 -1.6665 17 6 10.7106 -5.6467 -0.2429 18 1 10.6442 -6.6795 0.0992 19 6 12.1381 -5.1649 -0.2064 20 1 12.4118 -4.3345 0.4276 21 6 13.0947 -5.7841 -0.9827 22 7 12.7615 -6.7955 -1.7545 23 14 14.8639 -5.1864 -0.9380 24 1 15.3918 -5.3055 0.4449 25 1 15.6890 -6.0132 -1.8552 26 1 14.9176 -3.7660 -1.3678 27 6 9.7983 -4.7243 0.6031 28 6 4.1730 -2.4108 0.0013 29 6 3.4739 -1.1964 0.0004 30 7 2.1334 -1.1519 0.0005 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8897 -0.5141 33 1 -0.3633 -0.8902 -0.5134 34 1 4.2772 2.7760 0.8846 35 1 6.1481 0.9350 0.0020 36 1 7.3405 -1.1886 0.0126 37 1 8.1333 -2.8262 0.0047 38 1 8.1504 -6.4152 -1.5594 39 1 8.1444 -4.7254 -2.1384 40 1 10.3707 -6.3689 -2.2756 41 1 10.4775 -4.5858 -2.1373 42 1 13.4344 -7.2309 -2.3009 43 1 10.1058 -3.6838 0.4989 44 1 9.8172 -5.0256 1.6505 45 1 3.6370 -3.3484 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891289031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:19 Heat of formation + Delta-G solvation = -18.752105 kcal Electronic energy + Delta-G solvation = -28201.877057 eV Core-core repulsion = 24184.151560 eV Total energy + Delta-G solvation = -4017.725497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.94175 -40.04656 -38.37805 -37.94893 -36.97988 -34.02098 -33.58319 -32.60950 -31.84058 -31.32760 -28.72901 -28.21430 -27.28906 -25.46409 -23.88117 -23.64187 -22.72158 -21.36806 -19.89446 -19.49776 -19.18756 -18.82027 -18.17956 -17.08918 -16.73150 -16.42916 -15.82982 -15.53433 -14.98161 -14.94314 -14.60849 -14.49076 -14.20343 -14.13217 -13.90348 -13.41651 -13.35865 -13.04121 -12.76307 -12.65796 -12.41156 -12.12545 -12.07487 -11.83435 -11.26581 -11.19455 -11.08953 -11.04919 -10.96369 -10.65146 -10.38948 -10.03882 -9.89092 -9.72493 -9.65716 -9.57210 -9.27973 -8.87363 -8.77736 -8.70830 -8.40710 -6.04498 -4.08533 -0.38856 0.04693 1.26436 2.10458 2.70408 3.07952 3.10139 3.28309 3.34090 3.35524 3.55840 3.60431 3.81289 4.08722 4.32297 4.39652 4.44835 4.58688 4.76465 4.88259 5.09322 5.15768 5.24613 5.27256 5.42395 5.46435 5.54464 5.58618 5.63797 5.74842 5.78951 5.86091 6.07630 6.21519 6.26933 6.51946 6.53189 6.58525 6.67559 6.77899 6.80728 6.85424 7.20334 7.27076 7.61066 7.64019 7.67715 7.83645 7.98394 8.23559 8.37789 8.93231 9.55843 11.04465 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.002045 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.813771 B =13687.754401 C =14601.662643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.342 3.658 3 N -0.542 5.542 4 C 0.410 3.590 5 O -0.468 6.468 6 C -0.169 4.169 7 C -0.071 4.071 8 C -0.097 4.097 9 C -0.083 4.083 10 C 0.549 3.451 11 O -0.532 6.532 12 N -0.707 5.707 13 C 0.137 3.863 14 H 0.083 0.917 15 C -0.136 4.136 16 C -0.100 4.100 17 C 0.052 3.948 18 H 0.033 0.967 19 C -0.516 4.516 20 H 0.055 0.945 21 C 0.063 3.937 22 N -0.888 5.888 23 Si 0.890 3.110 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.121 4.121 28 C -0.041 4.041 29 C 0.168 3.832 30 N -0.503 5.503 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.413 0.587 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.398 0.602 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.261 0.739 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.492 16.967 4.937 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 N -0.268 5.268 4 C 0.208 3.792 5 O -0.276 6.276 6 C -0.175 4.175 7 C -0.091 4.091 8 C -0.116 4.116 9 C -0.089 4.089 10 C 0.334 3.666 11 O -0.409 6.409 12 N -0.358 5.358 13 C 0.034 3.966 14 H 0.101 0.899 15 C -0.174 4.174 16 C -0.139 4.139 17 C 0.033 3.967 18 H 0.051 0.949 19 C -0.555 4.555 20 H 0.073 0.927 21 C -0.139 4.139 22 N -0.526 5.526 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.159 4.159 28 C -0.060 4.060 29 C 0.041 3.959 30 N -0.219 5.219 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.274 0.726 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.233 0.767 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -20.815 15.884 4.215 26.521 hybrid contribution 2.297 1.000 0.323 2.526 sum -18.518 16.885 4.538 25.468 Atomic orbital electron populations 1.20637 0.85108 1.04511 1.04175 1.23011 0.98034 0.81827 0.89779 1.67707 1.10085 1.31479 1.17492 1.19616 0.86741 0.84826 0.87977 1.84636 1.75930 1.32572 1.34475 1.19698 0.96436 0.94184 1.07143 1.20769 0.91670 0.99201 0.97470 1.21134 1.00888 0.91182 0.98385 1.20260 0.93847 0.94106 1.00687 1.18156 0.82812 0.88164 0.77440 1.90789 1.68541 1.31985 1.49604 1.46303 1.05394 1.10786 1.73276 1.21976 0.92847 0.83929 0.97867 0.89871 1.22667 1.00067 1.00024 0.94664 1.22317 0.89462 1.01335 1.00752 1.19547 0.92705 0.94307 0.90127 0.94899 1.21039 0.92760 1.16439 1.25222 0.92694 1.24979 0.98670 0.94876 0.95367 1.69945 1.33875 1.21972 1.26774 0.86697 0.84912 0.78700 0.77875 1.20321 1.21350 1.20343 1.22772 0.92327 1.01519 0.99298 1.21165 0.92423 0.97320 0.95117 1.18757 0.89210 0.92341 0.95551 1.68634 1.08120 1.29240 1.15891 0.89295 0.89405 0.89165 0.72598 0.83674 0.84190 0.76659 0.92384 0.93136 0.91139 0.93462 0.92953 0.92028 0.92691 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.28 36.01 0.37 -0.19 16 2 C 0.34 3.55 7.62 -157.22 -1.20 2.35 16 3 N -0.54 -5.72 10.30 -10.38 -0.11 -5.83 16 4 C 0.41 3.88 7.89 -16.07 -0.13 3.76 16 5 O -0.47 -3.10 12.91 -17.55 -0.23 -3.32 16 6 C -0.17 -1.70 5.76 -106.63 -0.61 -2.32 16 7 C -0.07 -0.58 9.58 -39.67 -0.38 -0.96 16 8 C -0.10 -0.88 9.45 -39.54 -0.37 -1.25 16 9 C -0.08 -0.98 5.87 -104.96 -0.62 -1.60 16 10 C 0.55 8.09 7.77 -12.26 -0.10 8.00 16 11 O -0.53 -9.72 15.97 5.34 0.09 -9.64 16 12 N -0.71 -9.96 4.94 -53.61 -0.26 -10.23 16 13 C 0.14 2.36 3.23 -66.81 -0.22 2.14 16 14 H 0.08 1.51 7.59 -51.93 -0.39 1.12 16 15 C -0.14 -2.55 6.59 -25.61 -0.17 -2.72 16 16 C -0.10 -2.24 5.57 -25.07 -0.14 -2.38 16 17 C 0.05 1.22 2.82 -89.78 -0.25 0.96 16 18 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.52 -13.44 8.54 -34.44 -0.29 -13.73 16 20 H 0.05 1.39 7.78 -52.48 -0.41 0.99 16 21 C 0.06 1.69 5.33 -17.82 -0.10 1.60 16 22 N -0.89 -24.79 12.02 55.43 0.67 -24.12 16 23 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C -0.12 -2.26 5.94 -25.07 -0.15 -2.40 16 28 C -0.04 -0.50 9.58 -38.76 -0.37 -0.87 16 29 C 0.17 2.00 6.61 -84.86 -0.56 1.44 16 30 N -0.50 -6.02 10.32 -8.81 -0.09 -6.11 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.41 0.51 9.06 45.56 0.41 0.92 16 35 H 0.15 0.78 7.70 -52.48 -0.40 0.37 16 36 H 0.14 0.95 6.34 -52.49 -0.33 0.62 16 37 H 0.40 4.51 6.34 -40.82 -0.26 4.25 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.90 7.92 -51.93 -0.41 0.49 16 40 H 0.07 1.74 7.37 -51.93 -0.38 1.36 16 41 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 43 H 0.06 1.08 7.63 -51.93 -0.40 0.69 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.16 2.02 7.61 -52.49 -0.40 1.62 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -33.09 376.30 -9.63 -42.73 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.06 Total: 3.44 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -5.28 Total: -8.17 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.20 Total: -46.29 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.14 Total: -12.96 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.09 -9.63 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891289031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.973 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds