Wall clock time and date at job start Sat Apr 11 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32434 * 118.53826 * 2 1 4 4 C 1.32320 * 121.54034 * 179.97438 * 3 2 1 5 5 O 1.35284 * 120.87589 * 180.02562 * 4 3 2 6 6 C 1.41586 * 118.24989 * 0.02562 * 4 3 2 7 7 C 1.40084 * 121.89744 * 180.02562 * 6 4 3 8 8 C 1.36075 * 119.86015 * 179.69274 * 7 6 4 9 9 C 1.40422 * 120.78118 * 0.52064 * 8 7 6 10 10 C 1.47993 * 119.71527 * 179.74883 * 9 8 7 11 11 O 1.21534 * 119.99842 * 179.72832 * 10 9 8 12 12 N 1.34773 * 120.00153 * 359.72238 * 10 9 8 13 13 C 1.46500 * 119.99894 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.01868 * 325.70649 * 13 12 10 15 15 C 1.53873 * 110.03147 * 87.09634 * 13 12 10 16 16 C 1.54269 * 106.59646 * 119.33268 * 15 13 12 17 17 C 1.54882 * 104.19831 * 23.61137 * 16 15 13 18 18 H 1.08994 * 110.75597 * 80.55637 * 17 16 15 19 19 C 1.50702 * 110.75854 * 203.74430 * 17 16 15 20 20 H 1.08003 * 120.00527 * 118.54176 * 19 17 16 21 21 C 1.37878 * 119.99656 * 298.54724 * 19 17 16 22 22 N 1.31514 * 120.00160 * 359.97438 * 21 19 17 23 23 Si 1.86805 * 119.99758 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46921 * 60.00069 * 23 21 19 25 25 H 1.48509 * 109.46925 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47372 * 299.99774 * 23 21 19 27 27 C 1.54273 * 110.07287 * 204.28551 * 13 12 10 28 28 C 1.38549 * 120.56744 * 359.47635 * 9 8 7 29 29 C 1.40128 * 119.36229 * 0.25319 * 28 9 8 30 30 N 1.31117 * 118.53710 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46666 * 270.01795 * 1 2 3 32 32 H 1.08993 * 109.47191 * 30.02060 * 1 2 3 33 33 H 1.08997 * 109.47072 * 150.02410 * 1 2 3 34 34 H 0.96703 * 113.99251 * 90.00566 * 5 4 3 35 35 H 1.08003 * 120.07170 * 359.97438 * 7 6 4 36 36 H 1.07995 * 119.61189 * 180.24602 * 8 7 6 37 37 H 0.97002 * 120.00266 * 0.02562 * 12 10 9 38 38 H 1.08996 * 110.03511 * 238.61506 * 15 13 12 39 39 H 1.09002 * 110.03347 * 0.04582 * 15 13 12 40 40 H 1.09000 * 110.48429 * 142.29450 * 16 15 13 41 41 H 1.09001 * 110.48672 * 264.92943 * 16 15 13 42 42 H 0.97004 * 120.00181 * 179.97438 * 22 21 19 43 43 H 1.09001 * 110.48533 * 335.76640 * 27 13 12 44 44 H 1.08999 * 110.48202 * 98.40568 * 27 13 12 45 45 H 1.07994 * 120.31990 * 180.27330 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1397 1.1634 0.0000 4 6 3.4611 1.2327 0.0005 5 8 4.0936 2.4286 0.0010 6 6 4.1956 0.0223 0.0005 7 6 5.5964 0.0065 0.0015 8 6 6.2605 -1.1811 0.0078 9 6 5.5584 -2.3972 0.0023 10 6 6.3047 -3.6752 0.0037 11 8 5.7022 -4.7306 0.0040 12 7 7.6524 -3.6686 0.0046 13 6 8.3911 -4.9337 0.0065 14 1 7.8481 -5.6819 0.5841 15 6 8.5945 -5.4275 -1.4366 16 6 10.1182 -5.5009 -1.6665 17 6 10.7106 -5.6467 -0.2429 18 1 10.6442 -6.6795 0.0992 19 6 12.1381 -5.1649 -0.2064 20 1 12.4118 -4.3345 0.4276 21 6 13.0947 -5.7841 -0.9827 22 7 12.7615 -6.7955 -1.7545 23 14 14.8639 -5.1864 -0.9380 24 1 15.3918 -5.3055 0.4449 25 1 15.6890 -6.0132 -1.8552 26 1 14.9176 -3.7660 -1.3678 27 6 9.7983 -4.7243 0.6031 28 6 4.1730 -2.4108 0.0013 29 6 3.4739 -1.1964 0.0004 30 7 2.1334 -1.1519 0.0005 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8897 -0.5141 33 1 -0.3633 -0.8902 -0.5134 34 1 4.2772 2.7760 0.8846 35 1 6.1481 0.9350 0.0020 36 1 7.3405 -1.1886 0.0126 37 1 8.1333 -2.8262 0.0047 38 1 8.1504 -6.4152 -1.5594 39 1 8.1444 -4.7254 -2.1384 40 1 10.3707 -6.3689 -2.2756 41 1 10.4775 -4.5858 -2.1373 42 1 13.4344 -7.2309 -2.3009 43 1 10.1058 -3.6838 0.4989 44 1 9.8172 -5.0256 1.6505 45 1 3.6370 -3.3484 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891289031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:18 Heat of formation + Delta-G solvation = -42.799933 kcal Electronic energy + Delta-G solvation = -28202.919849 eV Core-core repulsion = 24184.151560 eV Total energy + Delta-G solvation = -4018.768289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.68581 -41.20914 -39.16696 -38.86366 -38.28527 -35.44574 -34.45085 -33.94996 -33.02069 -32.08645 -30.00506 -29.48499 -28.68209 -26.56310 -25.57563 -24.33494 -23.54178 -22.44464 -21.38622 -20.92140 -20.03963 -19.81151 -18.96842 -18.48294 -17.99012 -17.23952 -17.10062 -16.67560 -16.49067 -16.06635 -15.78424 -15.54818 -15.41693 -15.19418 -14.61719 -14.43932 -14.20885 -14.05125 -14.02725 -13.66169 -13.61196 -13.26937 -13.01692 -12.84515 -12.78124 -12.74054 -12.57674 -12.44379 -12.12908 -11.99511 -11.73982 -11.65420 -11.37017 -11.18937 -11.03104 -10.79870 -10.52295 -10.49600 -10.43373 -10.05449 -9.49886 -8.07494 -6.17886 -1.15191 -0.71618 0.49058 1.27789 1.45932 1.46668 1.53918 1.96731 2.04449 2.16726 2.47020 2.78681 2.84386 3.05200 3.23529 3.35699 3.52508 3.69563 3.87963 3.89221 4.02357 4.04100 4.18934 4.20092 4.44631 4.62344 4.69945 4.70498 4.75211 4.80652 4.89075 4.92267 4.93662 5.01930 5.03881 5.06912 5.18289 5.25049 5.27236 5.35861 5.41938 5.63673 5.68881 5.78814 5.95466 6.02277 6.39010 6.42391 6.47504 6.90770 6.93044 7.10193 7.50043 9.00609 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.002045 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.813771 B =13687.754401 C =14601.662643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.336 3.664 3 N -0.558 5.558 4 C 0.422 3.578 5 O -0.465 6.465 6 C -0.178 4.178 7 C -0.049 4.049 8 C -0.098 4.098 9 C -0.083 4.083 10 C 0.551 3.449 11 O -0.573 6.573 12 N -0.695 5.695 13 C 0.150 3.850 14 H 0.074 0.926 15 C -0.126 4.126 16 C -0.090 4.090 17 C 0.039 3.961 18 H -0.001 1.001 19 C -0.527 4.527 20 H 0.062 0.938 21 C 0.009 3.991 22 N -0.921 5.921 23 Si 0.953 3.047 24 H -0.272 1.272 25 H -0.292 1.292 26 H -0.267 1.267 27 C -0.106 4.106 28 C -0.058 4.058 29 C 0.150 3.850 30 N -0.533 5.533 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.438 0.562 35 H 0.183 0.817 36 H 0.168 0.832 37 H 0.415 0.585 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.040 0.960 42 H 0.258 0.742 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.190 20.635 5.695 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 N -0.284 5.284 4 C 0.220 3.780 5 O -0.277 6.277 6 C -0.184 4.184 7 C -0.069 4.069 8 C -0.117 4.117 9 C -0.090 4.090 10 C 0.338 3.662 11 O -0.454 6.454 12 N -0.346 5.346 13 C 0.046 3.954 14 H 0.092 0.908 15 C -0.165 4.165 16 C -0.128 4.128 17 C 0.020 3.980 18 H 0.017 0.983 19 C -0.565 4.565 20 H 0.080 0.920 21 C -0.189 4.189 22 N -0.560 5.560 23 Si 0.779 3.221 24 H -0.197 1.197 25 H -0.218 1.218 26 H -0.192 1.192 27 C -0.144 4.144 28 C -0.078 4.078 29 C 0.025 3.975 30 N -0.250 5.250 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.303 0.697 35 H 0.201 0.799 36 H 0.185 0.815 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.497 19.608 5.007 28.804 hybrid contribution 2.162 -0.067 0.100 2.165 sum -18.335 19.541 5.108 27.279 Atomic orbital electron populations 1.20766 0.82930 1.05212 1.05332 1.23664 0.99453 0.81508 0.88562 1.67834 1.10688 1.31387 1.18518 1.19726 0.86563 0.85509 0.86218 1.84600 1.75372 1.31127 1.36602 1.19886 0.97457 0.93735 1.07314 1.21153 0.90758 1.00294 0.94718 1.21356 1.02092 0.90076 0.98148 1.20031 0.93375 0.93757 1.01804 1.18553 0.82718 0.88723 0.76180 1.90772 1.69334 1.33848 1.51407 1.46029 1.05228 1.10396 1.72983 1.21570 0.92450 0.85191 0.96228 0.90789 1.22544 0.97379 1.00272 0.96282 1.22082 0.91826 0.99379 0.99514 1.19540 0.93122 0.93554 0.91764 0.98277 1.21460 0.94044 1.16303 1.24700 0.91991 1.25788 1.02743 0.95116 0.95272 1.70099 1.34905 1.23289 1.27736 0.85690 0.80091 0.78453 0.77866 1.19699 1.21755 1.19228 1.22572 0.91653 1.01292 0.98888 1.21036 0.92848 0.97113 0.96786 1.18850 0.89606 0.92857 0.96215 1.68653 1.08502 1.30216 1.17635 0.87767 0.88231 0.88847 0.69660 0.79944 0.81453 0.74630 0.93097 0.91858 0.94465 0.94087 0.93285 0.90165 0.91766 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.28 71.24 0.73 -0.28 16 2 C 0.34 6.71 7.62 138.76 1.06 7.77 16 3 N -0.56 -10.81 10.30 -299.80 -3.09 -13.90 16 4 C 0.42 6.90 7.89 85.45 0.67 7.57 16 5 O -0.46 -4.38 12.91 -85.70 -1.11 -5.49 16 6 C -0.18 -3.20 5.76 -21.17 -0.12 -3.32 16 7 C -0.05 -0.61 9.58 22.21 0.21 -0.40 16 8 C -0.10 -1.45 9.45 22.30 0.21 -1.24 16 9 C -0.08 -1.89 5.87 -20.08 -0.12 -2.00 16 10 C 0.55 15.83 7.77 86.83 0.67 16.50 16 11 O -0.57 -21.35 15.97 -3.82 -0.06 -21.41 16 12 N -0.69 -18.23 4.94 -441.82 -2.18 -20.41 16 13 C 0.15 5.03 3.23 45.72 0.15 5.18 16 14 H 0.07 2.67 7.59 -2.39 -0.02 2.66 16 15 C -0.13 -4.74 6.59 31.32 0.21 -4.54 16 16 C -0.09 -4.06 5.57 31.67 0.18 -3.89 16 17 C 0.04 1.85 2.82 -10.25 -0.03 1.82 16 18 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 19 C -0.53 -27.29 8.54 25.60 0.22 -27.08 16 20 H 0.06 3.05 7.78 -2.91 -0.02 3.03 16 21 C 0.01 0.51 5.33 84.65 0.45 0.96 16 22 N -0.92 -52.69 12.02 21.45 0.26 -52.44 16 23 Si 0.95 42.05 29.54 68.60 2.03 44.07 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 27 C -0.11 -3.80 5.94 31.67 0.19 -3.61 16 28 C -0.06 -1.45 9.58 22.80 0.22 -1.23 16 29 C 0.15 3.53 6.61 40.09 0.26 3.80 16 30 N -0.53 -12.83 10.32 -181.79 -1.88 -14.70 16 31 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.44 -0.78 9.06 -74.06 -0.67 -1.45 16 35 H 0.18 0.91 7.70 -2.91 -0.02 0.88 16 36 H 0.17 1.49 6.34 -2.91 -0.02 1.48 16 37 H 0.41 8.00 6.34 -92.71 -0.59 7.41 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 2.21 7.92 -2.39 -0.02 2.19 16 40 H 0.04 1.90 7.37 -2.39 -0.02 1.89 16 41 H 0.04 1.87 8.04 -2.39 -0.02 1.85 16 42 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 43 H 0.08 2.58 7.63 -2.39 -0.02 2.56 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.14 3.87 7.61 -2.91 -0.02 3.84 16 Total: -1.00 -74.20 376.30 -1.06 -75.27 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -0.20 Total: 12.98 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.17 Total: -3.98 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -6.89 Total: -101.45 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -1.17 Total: -26.89 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -74.20 -1.06 -75.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891289031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.468 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds