Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32440 * 118.53800 * 2 1 4 4 C 1.32317 * 121.53260 * 180.27711 * 3 2 1 5 5 O 1.35282 * 120.86796 * 180.02562 * 4 3 2 6 6 C 1.41580 * 118.25391 * 0.02562 * 4 3 2 7 7 C 1.40092 * 121.89252 * 180.02562 * 6 4 3 8 8 C 1.36072 * 119.85919 * 179.97438 * 7 6 4 9 9 C 1.40421 * 120.78304 * 0.02562 * 8 7 6 10 10 C 1.47989 * 119.71714 * 179.97438 * 9 8 7 11 11 O 1.21532 * 120.00485 * 150.18982 * 10 9 8 12 12 N 1.34782 * 119.99601 * 330.19206 * 10 9 8 13 13 C 1.46499 * 120.00365 * 6.47908 * 12 10 9 14 14 C 1.50698 * 109.46522 * 99.26504 * 13 12 10 15 15 H 1.08000 * 120.00326 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00073 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99521 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00218 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47072 * 60.00425 * 18 16 14 20 20 H 1.48499 * 109.46875 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47416 * 300.00450 * 18 16 14 22 22 C 1.46509 * 119.99533 * 186.48838 * 12 10 9 23 23 C 1.53002 * 109.46985 * 94.56340 * 22 12 10 24 24 C 1.53005 * 117.49361 * 243.47191 * 23 22 12 25 25 C 1.53002 * 117.49334 * 174.81778 * 23 22 12 26 26 C 1.38549 * 120.56350 * 359.97438 * 9 8 7 27 27 C 1.40117 * 119.37220 * 0.02562 * 26 9 8 28 28 N 1.31114 * 118.53420 * 180.26335 * 2 1 3 29 29 H 1.08997 * 109.47528 * 269.73804 * 1 2 3 30 30 H 1.09002 * 109.47247 * 29.73136 * 1 2 3 31 31 H 1.08999 * 109.47200 * 149.72972 * 1 2 3 32 32 H 0.96699 * 114.00340 * 269.97246 * 5 4 3 33 33 H 1.08001 * 120.06936 * 359.95548 * 7 6 4 34 34 H 1.08005 * 119.60484 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.47240 * 219.26276 * 13 12 10 36 36 H 1.08999 * 109.46953 * 339.26828 * 13 12 10 37 37 H 0.97003 * 119.99584 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.46666 * 214.56132 * 22 12 10 39 39 H 1.08993 * 109.47026 * 334.56002 * 22 12 10 40 40 H 1.08993 * 115.55421 * 29.13948 * 23 22 12 41 41 H 1.09000 * 117.50095 * 0.02562 * 24 23 22 42 42 H 1.08996 * 117.49493 * 145.02198 * 24 23 22 43 43 H 1.09005 * 117.49240 * 214.97759 * 25 23 22 44 44 H 1.08994 * 117.50005 * 359.97438 * 25 23 22 45 45 H 1.08003 * 120.31286 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1397 1.1635 0.0000 4 6 3.4611 1.2326 -0.0055 5 8 4.0935 2.4285 -0.0049 6 6 4.1955 0.0222 -0.0119 7 6 5.5963 0.0065 -0.0174 8 6 6.2605 -1.1811 -0.0230 9 6 5.5583 -2.3972 -0.0239 10 6 6.3045 -3.6752 -0.0306 11 8 5.8244 -4.6620 0.4915 12 7 7.5167 -3.7446 -0.6158 13 6 8.1580 -2.5274 -1.1191 14 6 9.1704 -2.0409 -0.1144 15 1 9.3213 -2.5843 0.8066 16 6 9.9048 -0.9026 -0.3715 17 7 9.7213 -0.2412 -1.4934 18 14 11.1592 -0.2992 0.8741 19 1 12.1876 -1.3486 1.0891 20 1 11.8093 0.9346 0.3639 21 1 10.4774 -0.0036 2.1598 22 6 8.1929 -5.0375 -0.7487 23 6 7.8885 -5.6331 -2.1248 24 6 7.1106 -6.9500 -2.1681 25 6 8.6033 -6.9309 -2.5065 26 6 4.1729 -2.4108 -0.0186 27 6 3.4737 -1.1965 -0.0128 28 7 2.1333 -1.1519 -0.0053 29 1 -0.3634 -0.0047 1.0276 30 1 -0.3634 0.8924 -0.5097 31 1 -0.3633 -0.8875 -0.5180 32 1 4.2741 2.7784 -0.8880 33 1 6.1479 0.9350 -0.0175 34 1 7.3405 -1.1885 -0.0277 35 1 8.6580 -2.7439 -2.0632 36 1 7.4029 -1.7572 -1.2761 37 1 10.2377 0.5598 -1.6741 38 1 9.2687 -4.8973 -0.6434 39 1 7.8370 -5.7151 0.0273 40 1 7.6992 -4.9105 -2.9185 41 1 6.8153 -7.3917 -1.2163 42 1 6.4099 -7.0937 -2.9905 43 1 8.8840 -7.0621 -3.5516 44 1 9.2907 -7.3601 -1.7776 45 1 3.6370 -3.3485 -0.0189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896861487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = 42.815784 kcal Electronic energy + Delta-G solvation = -29527.679947 eV Core-core repulsion = 25512.624234 eV Total energy + Delta-G solvation = -4015.055713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.38736 -39.73385 -37.84703 -37.44580 -36.73274 -35.16932 -33.09973 -32.75499 -31.96573 -30.72835 -28.75842 -27.52886 -26.81710 -24.58928 -23.35620 -22.80644 -22.19275 -22.12406 -20.69042 -19.52622 -18.91697 -17.88337 -17.82708 -16.77724 -16.36025 -15.96219 -15.69923 -15.24933 -14.79369 -14.62283 -14.55174 -14.32551 -13.87497 -13.71873 -13.50142 -13.36513 -12.93462 -12.82815 -12.60330 -12.51372 -12.26942 -12.05065 -11.71227 -11.58830 -11.38280 -11.31599 -11.12565 -11.06273 -10.81991 -10.64998 -10.44067 -10.24208 -9.97574 -9.84038 -9.64952 -9.40602 -9.19398 -8.96264 -8.70757 -8.03994 -7.87627 -6.42464 -4.52880 0.19649 0.72167 1.87487 2.80245 3.12876 3.18627 3.21199 3.23218 3.47036 3.63621 4.01620 4.11215 4.13146 4.19897 4.37180 4.76188 4.87703 4.90305 5.02034 5.04909 5.18863 5.26811 5.38260 5.44523 5.45796 5.48028 5.61197 5.71494 5.80393 5.81267 5.94101 6.07258 6.08806 6.09300 6.19573 6.31194 6.35985 6.47161 6.59187 6.66196 6.68366 6.88023 6.99363 7.17919 7.29628 7.32302 7.52782 7.76373 8.11641 8.14603 8.54614 8.76047 9.16080 10.61663 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008827 B = 0.004286 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.265130 B = 6530.575383 C = 9144.593853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.325 3.675 3 N -0.547 5.547 4 C 0.403 3.597 5 O -0.469 6.469 6 C -0.161 4.161 7 C -0.088 4.088 8 C -0.107 4.107 9 C -0.075 4.075 10 C 0.555 3.445 11 O -0.557 6.557 12 N -0.582 5.582 13 C 0.204 3.796 14 C -0.549 4.549 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.879 5.879 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.148 3.852 23 C -0.161 4.161 24 C -0.178 4.178 25 C -0.178 4.178 26 C -0.057 4.057 27 C 0.155 3.845 28 N -0.503 5.503 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.411 0.589 33 H 0.141 0.859 34 H 0.214 0.786 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.271 0.729 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.570 -0.363 -2.236 8.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.056 3.944 3 N -0.273 5.273 4 C 0.202 3.798 5 O -0.277 6.277 6 C -0.167 4.167 7 C -0.109 4.109 8 C -0.123 4.123 9 C -0.081 4.081 10 C 0.343 3.657 11 O -0.438 6.438 12 N -0.310 5.310 13 C 0.085 3.915 14 C -0.587 4.587 15 H 0.085 0.915 16 C -0.134 4.134 17 N -0.516 5.516 18 Si 0.724 3.276 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.197 1.197 22 C 0.025 3.975 23 C -0.181 4.181 24 C -0.215 4.215 25 C -0.215 4.215 26 C -0.077 4.077 27 C 0.029 3.971 28 N -0.220 5.220 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.271 0.729 33 H 0.159 0.841 34 H 0.230 0.770 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.706 -0.871 -1.501 9.860 hybrid contribution 1.816 0.756 0.008 1.967 sum -7.890 -0.115 -1.493 8.031 Atomic orbital electron populations 1.20542 0.85676 1.03958 1.03749 1.22815 0.97692 0.82103 0.91770 1.67620 1.10180 1.31445 1.18082 1.19615 0.86660 0.84902 0.88650 1.84613 1.76067 1.32668 1.34343 1.19786 0.96835 0.93834 1.06221 1.20868 0.90932 0.99827 0.99248 1.23314 1.06796 0.90068 0.92136 1.20234 0.93286 0.94770 0.99782 1.18178 0.81568 0.87186 0.78802 1.90693 1.69322 1.37312 1.46474 1.48011 1.16733 1.09623 1.56668 1.20410 0.93965 0.81591 0.95541 1.21425 1.21442 1.10693 1.05125 0.91481 1.24991 0.96677 0.96193 0.95584 1.69918 1.40528 1.17841 1.23290 0.86538 0.81352 0.78342 0.81366 1.19856 1.20890 1.19712 1.20910 0.97812 0.84661 0.94090 1.22769 1.04536 0.90853 0.99899 1.23005 0.93992 1.01566 1.02944 1.22906 0.95211 1.01558 1.01854 1.20976 0.92386 0.96721 0.97632 1.18623 0.88854 0.92450 0.97134 1.68518 1.08442 1.29203 1.15795 0.89813 0.89789 0.89588 0.72878 0.84088 0.77048 0.94452 0.91471 0.91961 0.89578 0.90273 0.87750 0.88699 0.89435 0.89100 0.88845 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.28 36.01 0.37 -0.45 16 2 C 0.33 4.83 7.62 -157.22 -1.20 3.63 16 3 N -0.55 -8.41 10.30 -10.38 -0.11 -8.52 16 4 C 0.40 6.16 7.89 -16.07 -0.13 6.04 16 5 O -0.47 -5.89 12.91 -17.54 -0.23 -6.12 16 6 C -0.16 -2.71 5.76 -106.63 -0.61 -3.32 16 7 C -0.09 -1.51 9.58 -39.66 -0.38 -1.89 16 8 C -0.11 -2.04 7.38 -39.54 -0.29 -2.33 16 9 C -0.07 -1.44 5.59 -104.96 -0.59 -2.02 16 10 C 0.55 11.43 7.45 -12.26 -0.09 11.34 16 11 O -0.56 -12.33 16.16 5.34 0.09 -12.25 16 12 N -0.58 -11.60 2.47 -176.12 -0.43 -12.04 16 13 C 0.20 4.39 4.67 -5.20 -0.02 4.37 16 14 C -0.55 -12.78 7.53 -34.44 -0.26 -13.04 16 15 H 0.07 1.61 7.81 -52.49 -0.41 1.19 16 16 C 0.07 1.68 5.35 -17.81 -0.10 1.58 16 17 N -0.88 -21.44 13.29 55.43 0.74 -20.70 16 18 Si 0.90 18.81 29.54 -169.99 -5.02 13.79 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 C 0.15 2.62 5.78 -4.04 -0.02 2.60 16 23 C -0.16 -2.51 6.01 -90.61 -0.54 -3.05 16 24 C -0.18 -2.45 10.18 -26.69 -0.27 -2.72 16 25 C -0.18 -2.27 10.25 -26.69 -0.27 -2.54 16 26 C -0.06 -1.04 9.58 -38.76 -0.37 -1.41 16 27 C 0.16 2.75 6.61 -84.86 -0.56 2.19 16 28 N -0.50 -8.40 10.32 -8.81 -0.09 -8.49 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.41 3.01 9.06 45.56 0.41 3.43 16 33 H 0.14 2.19 7.70 -52.49 -0.40 1.79 16 34 H 0.21 4.50 3.03 -52.48 -0.16 4.34 16 35 H 0.04 0.85 8.13 -51.93 -0.42 0.43 16 36 H 0.07 1.47 3.94 -52.94 -0.21 1.27 16 37 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 38 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 39 H 0.08 1.42 6.95 -51.93 -0.36 1.05 16 40 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 41 H 0.09 1.34 8.03 -51.93 -0.42 0.92 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.15 2.58 7.89 -52.48 -0.41 2.16 16 LS Contribution 379.77 15.07 5.72 5.72 Total: -1.00 -28.33 379.77 -9.58 -37.90 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -4.90 Total: 11.76 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -5.34 Total: -1.06 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.10 Total: -49.75 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.14 Total: -18.37 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.33 -9.58 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896861487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.720 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds