Wall clock time and date at job start Sat Apr 11 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32440 * 118.53800 * 2 1 4 4 C 1.32317 * 121.53260 * 180.27711 * 3 2 1 5 5 O 1.35282 * 120.86796 * 180.02562 * 4 3 2 6 6 C 1.41580 * 118.25391 * 0.02562 * 4 3 2 7 7 C 1.40092 * 121.89252 * 180.02562 * 6 4 3 8 8 C 1.36072 * 119.85919 * 179.97438 * 7 6 4 9 9 C 1.40421 * 120.78304 * 0.02562 * 8 7 6 10 10 C 1.47989 * 119.71714 * 179.97438 * 9 8 7 11 11 O 1.21532 * 120.00485 * 150.18982 * 10 9 8 12 12 N 1.34782 * 119.99601 * 330.19206 * 10 9 8 13 13 C 1.46499 * 120.00365 * 6.47908 * 12 10 9 14 14 C 1.50698 * 109.46522 * 99.26504 * 13 12 10 15 15 H 1.08000 * 120.00326 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00073 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99521 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00218 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47072 * 60.00425 * 18 16 14 20 20 H 1.48499 * 109.46875 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47416 * 300.00450 * 18 16 14 22 22 C 1.46509 * 119.99533 * 186.48838 * 12 10 9 23 23 C 1.53002 * 109.46985 * 94.56340 * 22 12 10 24 24 C 1.53005 * 117.49361 * 243.47191 * 23 22 12 25 25 C 1.53002 * 117.49334 * 174.81778 * 23 22 12 26 26 C 1.38549 * 120.56350 * 359.97438 * 9 8 7 27 27 C 1.40117 * 119.37220 * 0.02562 * 26 9 8 28 28 N 1.31114 * 118.53420 * 180.26335 * 2 1 3 29 29 H 1.08997 * 109.47528 * 269.73804 * 1 2 3 30 30 H 1.09002 * 109.47247 * 29.73136 * 1 2 3 31 31 H 1.08999 * 109.47200 * 149.72972 * 1 2 3 32 32 H 0.96699 * 114.00340 * 269.97246 * 5 4 3 33 33 H 1.08001 * 120.06936 * 359.95548 * 7 6 4 34 34 H 1.08005 * 119.60484 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.47240 * 219.26276 * 13 12 10 36 36 H 1.08999 * 109.46953 * 339.26828 * 13 12 10 37 37 H 0.97003 * 119.99584 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.46666 * 214.56132 * 22 12 10 39 39 H 1.08993 * 109.47026 * 334.56002 * 22 12 10 40 40 H 1.08993 * 115.55421 * 29.13948 * 23 22 12 41 41 H 1.09000 * 117.50095 * 0.02562 * 24 23 22 42 42 H 1.08996 * 117.49493 * 145.02198 * 24 23 22 43 43 H 1.09005 * 117.49240 * 214.97759 * 25 23 22 44 44 H 1.08994 * 117.50005 * 359.97438 * 25 23 22 45 45 H 1.08003 * 120.31286 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1397 1.1635 0.0000 4 6 3.4611 1.2326 -0.0055 5 8 4.0935 2.4285 -0.0049 6 6 4.1955 0.0222 -0.0119 7 6 5.5963 0.0065 -0.0174 8 6 6.2605 -1.1811 -0.0230 9 6 5.5583 -2.3972 -0.0239 10 6 6.3045 -3.6752 -0.0306 11 8 5.8244 -4.6620 0.4915 12 7 7.5167 -3.7446 -0.6158 13 6 8.1580 -2.5274 -1.1191 14 6 9.1704 -2.0409 -0.1144 15 1 9.3213 -2.5843 0.8066 16 6 9.9048 -0.9026 -0.3715 17 7 9.7213 -0.2412 -1.4934 18 14 11.1592 -0.2992 0.8741 19 1 12.1876 -1.3486 1.0891 20 1 11.8093 0.9346 0.3639 21 1 10.4774 -0.0036 2.1598 22 6 8.1929 -5.0375 -0.7487 23 6 7.8885 -5.6331 -2.1248 24 6 7.1106 -6.9500 -2.1681 25 6 8.6033 -6.9309 -2.5065 26 6 4.1729 -2.4108 -0.0186 27 6 3.4737 -1.1965 -0.0128 28 7 2.1333 -1.1519 -0.0053 29 1 -0.3634 -0.0047 1.0276 30 1 -0.3634 0.8924 -0.5097 31 1 -0.3633 -0.8875 -0.5180 32 1 4.2741 2.7784 -0.8880 33 1 6.1479 0.9350 -0.0175 34 1 7.3405 -1.1885 -0.0277 35 1 8.6580 -2.7439 -2.0632 36 1 7.4029 -1.7572 -1.2761 37 1 10.2377 0.5598 -1.6741 38 1 9.2687 -4.8973 -0.6434 39 1 7.8370 -5.7151 0.0273 40 1 7.6992 -4.9105 -2.9185 41 1 6.8153 -7.3917 -1.2163 42 1 6.4099 -7.0937 -2.9905 43 1 8.8840 -7.0621 -3.5516 44 1 9.2907 -7.3601 -1.7776 45 1 3.6370 -3.3485 -0.0189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896861487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:23 Heat of formation + Delta-G solvation = 25.323383 kcal Electronic energy + Delta-G solvation = -29528.438474 eV Core-core repulsion = 25512.624234 eV Total energy + Delta-G solvation = -4015.814240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.66454 -41.25420 -38.97705 -38.69819 -38.12442 -36.74404 -34.51826 -34.34221 -33.19497 -32.02586 -30.16597 -28.98725 -28.24778 -25.97501 -24.96544 -24.11888 -23.50585 -23.20759 -22.01812 -20.92853 -20.08013 -19.31500 -19.12464 -18.55699 -17.79205 -17.32908 -17.10186 -16.60196 -16.34364 -16.07530 -15.90749 -15.55103 -15.18358 -15.07221 -14.84454 -14.61216 -14.37925 -14.28806 -13.97925 -13.64277 -13.48468 -13.30419 -13.07140 -12.91499 -12.76700 -12.69168 -12.57067 -12.34982 -12.24969 -12.07214 -11.91235 -11.76993 -11.39009 -11.35820 -10.96190 -10.83579 -10.63850 -10.47727 -10.25428 -9.57872 -9.33027 -8.23855 -6.39459 -1.10066 -0.60133 0.54264 1.37902 1.45140 1.48341 1.54029 1.97028 2.09536 2.19255 2.41610 2.81889 2.85846 2.95272 3.05418 3.09959 3.42047 3.58309 3.76460 3.83453 3.99036 4.01784 4.11096 4.18142 4.26801 4.37948 4.49001 4.66801 4.68547 4.73803 4.76681 4.81063 4.84282 4.87370 4.92764 5.00745 5.18585 5.22636 5.24778 5.25958 5.27822 5.32889 5.49518 5.63841 5.74292 5.84811 5.96964 6.41061 6.45192 6.73431 6.93330 7.11449 7.32661 8.79857 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008827 B = 0.004286 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.265130 B = 6530.575383 C = 9144.593853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.328 3.672 3 N -0.552 5.552 4 C 0.418 3.582 5 O -0.467 6.467 6 C -0.174 4.174 7 C -0.071 4.071 8 C -0.127 4.127 9 C -0.086 4.086 10 C 0.551 3.449 11 O -0.579 6.579 12 N -0.582 5.582 13 C 0.218 3.782 14 C -0.554 4.554 15 H 0.055 0.945 16 C 0.040 3.960 17 N -0.901 5.901 18 Si 0.948 3.052 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.272 1.272 22 C 0.148 3.852 23 C -0.185 4.185 24 C -0.174 4.174 25 C -0.153 4.153 26 C -0.059 4.059 27 C 0.149 3.851 28 N -0.524 5.524 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.435 0.565 33 H 0.157 0.843 34 H 0.193 0.807 35 H 0.019 0.981 36 H 0.069 0.931 37 H 0.273 0.727 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.573 0.614 -2.386 9.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.060 3.940 3 N -0.278 5.278 4 C 0.215 3.785 5 O -0.279 6.279 6 C -0.180 4.180 7 C -0.092 4.092 8 C -0.144 4.144 9 C -0.092 4.092 10 C 0.339 3.661 11 O -0.462 6.462 12 N -0.310 5.310 13 C 0.098 3.902 14 C -0.592 4.592 15 H 0.073 0.927 16 C -0.163 4.163 17 N -0.538 5.538 18 Si 0.773 3.227 19 H -0.200 1.200 20 H -0.204 1.204 21 H -0.198 1.198 22 C 0.025 3.975 23 C -0.204 4.204 24 C -0.211 4.211 25 C -0.191 4.191 26 C -0.078 4.078 27 C 0.023 3.977 28 N -0.241 5.241 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.300 0.700 33 H 0.175 0.825 34 H 0.210 0.790 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.694 0.112 -1.677 10.826 hybrid contribution 2.003 0.553 0.056 2.078 sum -8.691 0.664 -1.622 8.866 Atomic orbital electron populations 1.20748 0.82361 1.05443 1.05204 1.23779 0.99603 0.81466 0.89198 1.67828 1.09917 1.31520 1.18556 1.19664 0.86729 0.85184 0.86875 1.84569 1.75680 1.31242 1.36418 1.19882 0.96650 0.94481 1.06985 1.20971 0.91269 0.99590 0.97335 1.23000 1.05778 0.90862 0.94742 1.20135 0.93718 0.94183 1.01163 1.18433 0.81652 0.87551 0.78421 1.90660 1.69804 1.38177 1.47546 1.48046 1.16690 1.10028 1.56220 1.20163 0.93583 0.82140 0.94306 1.21482 1.21985 1.10838 1.04922 0.92671 1.25496 0.97867 0.96195 0.96785 1.69980 1.41279 1.18191 1.24333 0.85757 0.79480 0.77870 0.79578 1.20020 1.20371 1.19763 1.20987 0.97283 0.83735 0.95476 1.22606 1.07814 0.91771 0.98237 1.23044 0.95176 0.99668 1.03215 1.23026 0.94635 0.98181 1.03222 1.20954 0.91909 0.97225 0.97757 1.18720 0.89663 0.92450 0.96857 1.68610 1.07785 1.30187 1.17502 0.88128 0.87950 0.88443 0.69997 0.82533 0.79040 0.96246 0.91408 0.91789 0.90021 0.90778 0.88966 0.89174 0.88266 0.87229 0.87716 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.28 71.24 0.73 -0.65 16 2 C 0.33 9.02 7.62 138.76 1.06 10.08 16 3 N -0.55 -15.61 10.30 -299.81 -3.09 -18.69 16 4 C 0.42 11.89 7.89 85.44 0.67 12.56 16 5 O -0.47 -10.46 12.91 -85.67 -1.11 -11.57 16 6 C -0.17 -5.70 5.76 -21.16 -0.12 -5.82 16 7 C -0.07 -2.42 9.58 22.22 0.21 -2.20 16 8 C -0.13 -4.97 7.38 22.30 0.16 -4.80 16 9 C -0.09 -3.43 5.59 -20.09 -0.11 -3.54 16 10 C 0.55 23.63 7.45 86.83 0.65 24.28 16 11 O -0.58 -26.57 16.16 -3.82 -0.06 -26.63 16 12 N -0.58 -24.23 2.47 -829.39 -2.05 -26.28 16 13 C 0.22 9.76 4.67 85.63 0.40 10.16 16 14 C -0.55 -26.50 7.53 25.60 0.19 -26.31 16 15 H 0.06 2.72 7.81 -2.91 -0.02 2.70 16 16 C 0.04 1.90 5.35 84.66 0.45 2.35 16 17 N -0.90 -44.20 13.29 21.45 0.28 -43.91 16 18 Si 0.95 38.53 29.54 68.60 2.03 40.56 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 20 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 22 C 0.15 5.41 5.78 86.38 0.50 5.91 16 23 C -0.19 -5.83 6.01 -10.79 -0.06 -5.89 16 24 C -0.17 -4.69 10.18 30.62 0.31 -4.38 16 25 C -0.15 -3.70 10.25 30.62 0.31 -3.39 16 26 C -0.06 -2.17 9.58 22.80 0.22 -1.96 16 27 C 0.15 5.21 6.61 40.09 0.26 5.47 16 28 N -0.52 -16.91 10.32 -181.79 -1.88 -18.79 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.43 5.05 9.06 -74.06 -0.67 4.38 16 33 H 0.16 4.70 7.70 -2.91 -0.02 4.67 16 34 H 0.19 8.42 3.03 -2.91 -0.01 8.41 16 35 H 0.02 0.93 8.13 -2.39 -0.02 0.91 16 36 H 0.07 3.10 3.94 -3.34 -0.01 3.08 16 37 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16 38 H 0.08 2.99 8.11 -2.39 -0.02 2.97 16 39 H 0.07 2.75 6.95 -2.39 -0.02 2.74 16 40 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.09 2.52 8.03 -2.39 -0.02 2.50 16 42 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.11 2.26 8.14 -2.38 -0.02 2.25 16 44 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 45 H 0.15 5.30 7.89 -2.91 -0.02 5.28 16 Total: -1.00 -60.94 379.77 0.35 -60.59 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.38 Total: 32.84 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 5.84 Total: 11.88 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -6.73 Total: -107.67 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -1.17 Total: -38.19 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -60.94 0.35 -60.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896861487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.911 kcal (2) G-P(sol) polarization free energy of solvation -60.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds