Wall clock time and date at job start Sat Apr 11 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.32439 * 118.53543 * 2 1 4 4 C 1.32328 * 121.53305 * 179.97438 * 3 2 1 5 5 O 1.35283 * 120.87054 * 180.02562 * 4 3 2 6 6 C 1.41580 * 118.25252 * 0.02562 * 4 3 2 7 7 C 1.40081 * 121.88941 * 180.02562 * 6 4 3 8 8 C 1.36078 * 119.85953 * 180.25614 * 7 6 4 9 9 C 1.40421 * 120.78125 * 359.44718 * 8 7 6 10 10 C 1.47989 * 119.71835 * 180.28594 * 9 8 7 11 11 O 1.21531 * 119.99891 * 310.18233 * 10 9 8 12 12 N 1.34773 * 120.00259 * 130.18247 * 10 9 8 13 13 C 1.46930 * 120.62779 * 3.16378 * 12 10 9 14 14 C 1.52756 * 109.00925 * 233.58323 * 13 12 10 15 15 C 1.53037 * 109.38556 * 305.59136 * 14 13 12 16 16 C 1.50702 * 109.44968 * 181.25286 * 15 14 13 17 17 H 1.08005 * 120.00252 * 239.93805 * 16 15 14 18 18 C 1.37877 * 119.99956 * 59.93805 * 16 15 14 19 19 N 1.31509 * 119.99984 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99770 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47270 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46790 * 120.00329 * 20 18 16 23 23 H 1.48499 * 109.47024 * 240.00146 * 20 18 16 24 24 C 1.53037 * 109.53733 * 61.23995 * 15 14 13 25 25 C 1.46923 * 120.63534 * 183.45067 * 12 10 9 26 26 C 1.38548 * 120.56561 * 0.55395 * 9 8 7 27 27 C 1.40130 * 119.36661 * 359.73192 * 26 9 8 28 28 N 1.31113 * 118.53869 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47676 * 89.99699 * 1 2 3 30 30 H 1.09004 * 109.47200 * 209.99737 * 1 2 3 31 31 H 1.09004 * 109.47428 * 329.99173 * 1 2 3 32 32 H 0.96699 * 113.99869 * 269.97916 * 5 4 3 33 33 H 1.07999 * 120.06937 * 359.97438 * 7 6 4 34 34 H 1.07997 * 119.60341 * 179.70054 * 8 7 6 35 35 H 1.09004 * 109.59011 * 353.42432 * 13 12 10 36 36 H 1.09000 * 109.58490 * 113.84543 * 13 12 10 37 37 H 1.09003 * 109.56716 * 185.55483 * 14 13 12 38 38 H 1.09006 * 109.35934 * 65.50380 * 14 13 12 39 39 H 1.08998 * 109.46107 * 301.22135 * 15 14 13 40 40 H 0.97003 * 120.00007 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.49685 * 178.68335 * 24 15 14 42 42 H 1.09003 * 109.50083 * 58.59102 * 24 15 14 43 43 H 1.08998 * 109.58365 * 246.15584 * 25 12 10 44 44 H 1.09007 * 109.58451 * 6.43116 * 25 12 10 45 45 H 1.08003 * 120.31661 * 179.75261 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1396 1.1635 0.0000 4 6 3.4610 1.2327 0.0005 5 8 4.0935 2.4286 0.0010 6 6 4.1955 0.0223 0.0005 7 6 5.5962 0.0067 0.0015 8 6 6.2605 -1.1809 -0.0038 9 6 5.5585 -2.3970 0.0013 10 6 6.3048 -3.6750 0.0017 11 8 7.1950 -3.8590 -0.8049 12 7 5.9973 -4.6346 0.8966 13 6 4.8789 -4.4549 1.8324 14 6 5.3815 -4.6793 3.2574 15 6 6.0624 -6.0469 3.3464 16 6 6.5316 -6.2828 4.7590 17 1 7.5806 -6.4431 4.9600 18 6 5.6217 -6.2942 5.7948 19 7 4.3443 -6.0996 5.5500 20 14 6.2032 -6.5874 7.5456 21 1 7.6757 -6.7792 7.5526 22 1 5.8522 -5.4149 8.3866 23 1 5.5438 -7.8017 8.0894 24 6 7.2627 -6.0838 2.3977 25 6 6.7779 -5.8778 0.9592 26 6 4.1731 -2.4108 0.0003 27 6 3.4738 -1.1965 -0.0001 28 7 2.1333 -1.1518 0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 4.2780 2.7763 -0.8822 33 1 6.1478 0.9352 0.0020 34 1 7.3405 -1.1881 -0.0079 35 1 4.4845 -3.4429 1.7405 36 1 4.0941 -5.1769 1.6068 37 1 4.5409 -4.6456 3.9505 38 1 6.0975 -3.8988 3.5151 39 1 5.3529 -6.8249 3.0647 40 1 3.7041 -6.1080 6.2787 41 1 7.7610 -7.0498 2.4788 42 1 7.9611 -5.2902 2.6635 43 1 6.1512 -6.7182 0.6609 44 1 7.6348 -5.8053 0.2894 45 1 3.6372 -3.3485 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897353593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:27 Heat of formation + Delta-G solvation = -6.477847 kcal Electronic energy + Delta-G solvation = -29407.587103 eV Core-core repulsion = 25390.393858 eV Total energy + Delta-G solvation = -4017.193245 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79015 -40.09235 -38.21841 -37.75088 -36.84018 -33.72462 -33.47793 -32.47959 -31.67415 -30.78884 -30.03869 -28.49639 -26.62638 -25.27225 -23.55500 -23.14477 -22.62672 -22.21699 -20.63662 -19.27170 -19.09658 -18.25675 -17.91633 -16.84230 -16.51918 -16.16184 -15.88623 -15.60320 -14.85320 -14.66757 -14.57573 -14.36795 -14.00095 -13.75898 -13.34598 -13.13060 -13.11515 -12.95287 -12.78128 -12.70038 -12.51572 -12.39075 -12.03967 -11.96454 -11.62485 -11.36398 -11.05958 -10.99034 -10.87077 -10.66267 -10.44775 -10.17826 -9.89782 -9.68194 -9.54655 -9.37623 -9.23333 -8.99539 -8.51451 -8.42316 -8.13890 -6.06926 -4.13161 -0.20397 0.29252 1.43832 2.36607 2.83654 2.94589 3.24365 3.25160 3.33904 3.37520 3.65756 3.72657 3.96145 4.25817 4.38039 4.45380 4.57136 4.81026 4.88645 5.05830 5.22712 5.24303 5.31592 5.37894 5.50601 5.58528 5.64223 5.70960 5.80275 5.84561 5.98320 5.98533 6.05318 6.05596 6.22786 6.25957 6.35872 6.57004 6.69176 6.78359 6.92802 6.95427 7.05031 7.20386 7.60414 7.73272 7.81641 7.86001 7.98646 8.28817 8.35380 8.90395 9.52422 10.98683 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.003122 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.394667 B = 8967.498973 C =10111.086902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.341 3.659 3 N -0.543 5.543 4 C 0.409 3.591 5 O -0.468 6.468 6 C -0.171 4.171 7 C -0.072 4.072 8 C -0.079 4.079 9 C -0.066 4.066 10 C 0.551 3.449 11 O -0.545 6.545 12 N -0.586 5.586 13 C 0.091 3.909 14 C -0.124 4.124 15 C 0.048 3.952 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.124 4.124 25 C 0.112 3.888 26 C -0.069 4.069 27 C 0.172 3.828 28 N -0.502 5.502 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.411 0.589 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.039 0.961 39 H 0.029 0.971 40 H 0.260 0.740 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 13.756 -13.578 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 N -0.269 5.269 4 C 0.208 3.792 5 O -0.276 6.276 6 C -0.176 4.176 7 C -0.092 4.092 8 C -0.098 4.098 9 C -0.072 4.072 10 C 0.338 3.662 11 O -0.425 6.425 12 N -0.317 5.317 13 C -0.031 4.031 14 C -0.163 4.163 15 C 0.030 3.970 16 C -0.550 4.550 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.162 4.162 25 C -0.010 4.010 26 C -0.089 4.089 27 C 0.045 3.955 28 N -0.218 5.218 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.272 0.728 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.667 13.461 -13.292 19.485 hybrid contribution 1.186 0.102 0.732 1.397 sum -3.481 13.563 -12.559 18.810 Atomic orbital electron populations 1.20628 0.85193 1.04568 1.04016 1.22976 0.97978 0.81849 0.89886 1.67695 1.10038 1.31494 1.17669 1.19593 0.86765 0.84746 0.88141 1.84638 1.75992 1.32654 1.34331 1.19657 0.96378 0.94174 1.07437 1.20745 0.91674 0.99006 0.97784 1.20918 1.01145 0.90307 0.97440 1.20162 0.93415 0.94782 0.98863 1.18213 0.83244 0.83217 0.81568 1.90758 1.32139 1.80357 1.39215 1.48229 1.32450 1.17458 1.33580 1.22321 0.87821 1.01158 0.91773 1.21957 1.02705 0.99435 0.92163 1.18647 0.91727 0.93109 0.93545 1.21224 0.93845 1.48390 0.91583 0.92617 1.24958 0.94900 0.95072 0.99006 1.69835 1.01177 1.50072 1.31890 0.86565 0.78935 0.77812 0.84877 1.19818 1.21059 1.21011 1.22021 1.00406 1.00907 0.92845 1.21791 0.95468 0.84352 0.99394 1.21244 0.92359 0.97358 0.97904 1.18682 0.89154 0.92269 0.95387 1.68623 1.08079 1.29222 1.15899 0.89440 0.89089 0.89472 0.72814 0.83792 0.84076 0.90812 0.91338 0.87588 0.94257 0.95335 0.92979 0.91853 0.92866 0.91711 0.90100 0.82947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.28 36.00 0.37 -0.34 16 2 C 0.34 4.17 7.62 -157.22 -1.20 2.97 16 3 N -0.54 -6.68 10.30 -10.38 -0.11 -6.79 16 4 C 0.41 4.62 7.89 -16.06 -0.13 4.50 16 5 O -0.47 -3.86 12.91 -17.54 -0.23 -4.08 16 6 C -0.17 -2.08 5.76 -106.63 -0.61 -2.69 16 7 C -0.07 -0.76 9.58 -39.67 -0.38 -1.14 16 8 C -0.08 -0.98 9.62 -39.54 -0.38 -1.36 16 9 C -0.07 -0.95 5.02 -104.96 -0.53 -1.48 16 10 C 0.55 9.38 7.22 -12.27 -0.09 9.29 16 11 O -0.55 -10.52 16.45 5.34 0.09 -10.43 16 12 N -0.59 -10.23 2.98 -174.09 -0.52 -10.74 16 13 C 0.09 1.61 5.29 -3.93 -0.02 1.59 16 14 C -0.12 -2.70 5.14 -26.84 -0.14 -2.84 16 15 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 16 C -0.51 -13.43 8.56 -34.44 -0.29 -13.72 16 17 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -24.22 11.31 55.43 0.63 -23.60 16 20 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 C -0.12 -2.44 5.30 -26.62 -0.14 -2.58 16 25 C 0.11 1.95 6.43 -3.72 -0.02 1.93 16 26 C -0.07 -0.97 7.33 -38.76 -0.28 -1.25 16 27 C 0.17 2.37 6.61 -84.86 -0.56 1.81 16 28 N -0.50 -6.93 10.32 -8.81 -0.09 -7.02 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.41 1.09 9.06 45.56 0.41 1.50 16 33 H 0.14 1.08 7.70 -52.49 -0.40 0.67 16 34 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.07 1.21 4.56 -51.93 -0.24 0.97 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.11 2.60 6.03 -51.93 -0.31 2.29 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 45 H 0.15 2.06 7.02 -52.48 -0.37 1.69 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -32.08 368.93 -9.43 -41.51 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.04 Total: 2.75 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -4.69 Total: -2.84 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.09 Total: -48.15 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.14 Total: -14.51 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.08 -9.43 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897353593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.032 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds