Wall clock time and date at job start Sat Apr 11 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.32439 * 118.53543 * 2 1 4 4 C 1.32328 * 121.53305 * 179.97438 * 3 2 1 5 5 O 1.35283 * 120.87054 * 180.02562 * 4 3 2 6 6 C 1.41580 * 118.25252 * 0.02562 * 4 3 2 7 7 C 1.40081 * 121.88941 * 180.02562 * 6 4 3 8 8 C 1.36078 * 119.85953 * 180.25614 * 7 6 4 9 9 C 1.40421 * 120.78125 * 359.44718 * 8 7 6 10 10 C 1.47989 * 119.71835 * 180.28594 * 9 8 7 11 11 O 1.21531 * 119.99891 * 310.18233 * 10 9 8 12 12 N 1.34773 * 120.00259 * 130.18247 * 10 9 8 13 13 C 1.46930 * 120.62779 * 3.16378 * 12 10 9 14 14 C 1.52756 * 109.00925 * 233.58323 * 13 12 10 15 15 C 1.53037 * 109.38556 * 305.59136 * 14 13 12 16 16 C 1.50702 * 109.44968 * 181.25286 * 15 14 13 17 17 H 1.08005 * 120.00252 * 239.93805 * 16 15 14 18 18 C 1.37877 * 119.99956 * 59.93805 * 16 15 14 19 19 N 1.31509 * 119.99984 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99770 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47270 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46790 * 120.00329 * 20 18 16 23 23 H 1.48499 * 109.47024 * 240.00146 * 20 18 16 24 24 C 1.53037 * 109.53733 * 61.23995 * 15 14 13 25 25 C 1.46923 * 120.63534 * 183.45067 * 12 10 9 26 26 C 1.38548 * 120.56561 * 0.55395 * 9 8 7 27 27 C 1.40130 * 119.36661 * 359.73192 * 26 9 8 28 28 N 1.31113 * 118.53869 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47676 * 89.99699 * 1 2 3 30 30 H 1.09004 * 109.47200 * 209.99737 * 1 2 3 31 31 H 1.09004 * 109.47428 * 329.99173 * 1 2 3 32 32 H 0.96699 * 113.99869 * 269.97916 * 5 4 3 33 33 H 1.07999 * 120.06937 * 359.97438 * 7 6 4 34 34 H 1.07997 * 119.60341 * 179.70054 * 8 7 6 35 35 H 1.09004 * 109.59011 * 353.42432 * 13 12 10 36 36 H 1.09000 * 109.58490 * 113.84543 * 13 12 10 37 37 H 1.09003 * 109.56716 * 185.55483 * 14 13 12 38 38 H 1.09006 * 109.35934 * 65.50380 * 14 13 12 39 39 H 1.08998 * 109.46107 * 301.22135 * 15 14 13 40 40 H 0.97003 * 120.00007 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.49685 * 178.68335 * 24 15 14 42 42 H 1.09003 * 109.50083 * 58.59102 * 24 15 14 43 43 H 1.08998 * 109.58365 * 246.15584 * 25 12 10 44 44 H 1.09007 * 109.58451 * 6.43116 * 25 12 10 45 45 H 1.08003 * 120.31661 * 179.75261 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1396 1.1635 0.0000 4 6 3.4610 1.2327 0.0005 5 8 4.0935 2.4286 0.0010 6 6 4.1955 0.0223 0.0005 7 6 5.5962 0.0067 0.0015 8 6 6.2605 -1.1809 -0.0038 9 6 5.5585 -2.3970 0.0013 10 6 6.3048 -3.6750 0.0017 11 8 7.1950 -3.8590 -0.8049 12 7 5.9973 -4.6346 0.8966 13 6 4.8789 -4.4549 1.8324 14 6 5.3815 -4.6793 3.2574 15 6 6.0624 -6.0469 3.3464 16 6 6.5316 -6.2828 4.7590 17 1 7.5806 -6.4431 4.9600 18 6 5.6217 -6.2942 5.7948 19 7 4.3443 -6.0996 5.5500 20 14 6.2032 -6.5874 7.5456 21 1 7.6757 -6.7792 7.5526 22 1 5.8522 -5.4149 8.3866 23 1 5.5438 -7.8017 8.0894 24 6 7.2627 -6.0838 2.3977 25 6 6.7779 -5.8778 0.9592 26 6 4.1731 -2.4108 0.0003 27 6 3.4738 -1.1965 -0.0001 28 7 2.1333 -1.1518 0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5140 32 1 4.2780 2.7763 -0.8822 33 1 6.1478 0.9352 0.0020 34 1 7.3405 -1.1881 -0.0079 35 1 4.4845 -3.4429 1.7405 36 1 4.0941 -5.1769 1.6068 37 1 4.5409 -4.6456 3.9505 38 1 6.0975 -3.8988 3.5151 39 1 5.3529 -6.8249 3.0647 40 1 3.7041 -6.1080 6.2787 41 1 7.7610 -7.0498 2.4788 42 1 7.9611 -5.2902 2.6635 43 1 6.1512 -6.7182 0.6609 44 1 7.6348 -5.8053 0.2894 45 1 3.6372 -3.3485 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897353593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:26 Heat of formation + Delta-G solvation = -28.515563 kcal Electronic energy + Delta-G solvation = -29408.542730 eV Core-core repulsion = 25390.393858 eV Total energy + Delta-G solvation = -4018.148872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.71234 -41.40334 -39.04248 -38.81964 -38.28545 -35.43376 -34.40929 -33.70314 -32.82680 -32.20437 -31.49363 -29.33438 -28.26837 -26.53569 -24.75891 -24.40602 -23.90254 -23.43925 -22.03746 -20.58146 -20.00672 -19.23146 -19.13776 -18.43468 -17.84621 -17.39594 -16.97240 -16.80697 -16.49412 -15.96009 -15.65671 -15.36799 -15.26440 -14.85898 -14.67075 -14.53026 -14.47532 -14.15245 -13.94363 -13.92087 -13.65203 -13.34241 -13.28431 -13.16006 -12.87764 -12.83399 -12.67149 -12.44800 -12.17919 -12.01473 -11.94690 -11.72733 -11.52168 -11.22848 -11.03354 -10.85381 -10.48328 -10.43746 -10.34680 -9.67557 -9.45203 -8.09241 -6.22249 -1.11606 -0.65948 0.50850 1.28311 1.39299 1.42876 1.52509 1.69850 1.98012 2.12470 2.43127 2.73460 2.80075 3.03092 3.17947 3.26626 3.44162 3.70522 3.84209 4.00701 4.03436 4.18195 4.23592 4.31016 4.39234 4.42475 4.53353 4.58691 4.66683 4.72587 4.79834 4.82952 4.86157 4.92395 4.92875 5.05736 5.16268 5.19873 5.27886 5.35293 5.38699 5.47199 5.62377 5.79676 5.96325 6.09014 6.29696 6.37715 6.42904 6.87780 6.90977 6.92789 7.45868 8.94438 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.003122 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.394667 B = 8967.498973 C =10111.086902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.337 3.663 3 N -0.557 5.557 4 C 0.423 3.577 5 O -0.465 6.465 6 C -0.183 4.183 7 C -0.047 4.047 8 C -0.093 4.093 9 C -0.076 4.076 10 C 0.555 3.445 11 O -0.568 6.568 12 N -0.590 5.590 13 C 0.107 3.893 14 C -0.114 4.114 15 C 0.045 3.955 16 C -0.532 4.532 17 H 0.049 0.951 18 C 0.017 3.983 19 N -0.912 5.912 20 Si 0.948 3.052 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.113 4.113 25 C 0.116 3.884 26 C -0.079 4.079 27 C 0.156 3.844 28 N -0.530 5.530 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.437 0.563 33 H 0.182 0.818 34 H 0.152 0.848 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.006 0.994 40 H 0.261 0.739 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.825 15.733 -14.166 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 N -0.284 5.284 4 C 0.221 3.779 5 O -0.277 6.277 6 C -0.189 4.189 7 C -0.067 4.067 8 C -0.112 4.112 9 C -0.082 4.082 10 C 0.343 3.657 11 O -0.449 6.449 12 N -0.321 5.321 13 C -0.015 4.015 14 C -0.153 4.153 15 C 0.027 3.973 16 C -0.570 4.570 17 H 0.067 0.933 18 C -0.182 4.182 19 N -0.552 5.552 20 Si 0.774 3.226 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.152 4.152 25 C -0.005 4.005 26 C -0.098 4.098 27 C 0.030 3.970 28 N -0.247 5.247 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.303 0.697 33 H 0.199 0.801 34 H 0.169 0.831 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.024 0.976 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.518 15.453 -13.906 21.274 hybrid contribution 1.125 -0.397 0.891 1.489 sum -3.393 15.056 -13.015 20.189 Atomic orbital electron populations 1.20764 0.82918 1.05185 1.05359 1.23668 0.99447 0.81544 0.88461 1.67837 1.10493 1.31392 1.18639 1.19688 0.86599 0.85388 0.86253 1.84598 1.75428 1.31127 1.36551 1.19856 0.97156 0.94075 1.07797 1.21082 0.91015 0.99756 0.94812 1.21071 1.01721 0.90038 0.98372 1.20046 0.93513 0.94266 1.00400 1.18551 0.82814 0.83642 0.80694 1.90736 1.33287 1.80883 1.39998 1.48219 1.32358 1.17745 1.33735 1.22091 0.87774 1.02307 0.89353 1.21712 1.01143 0.98228 0.94210 1.18614 0.92585 0.93021 0.93088 1.21571 0.93637 1.48472 0.93364 0.93260 1.25635 0.95077 0.95031 1.02410 1.69954 1.01903 1.50578 1.32761 0.85662 0.78540 0.77640 0.80747 1.19476 1.20836 1.20672 1.21862 0.98770 1.00991 0.93542 1.21722 0.96041 0.84998 0.97782 1.21166 0.92188 0.97614 0.98853 1.18821 0.89612 0.92806 0.95767 1.68655 1.08248 1.30141 1.17633 0.87591 0.88901 0.88330 0.69735 0.80119 0.83051 0.89225 0.90908 0.90379 0.95447 0.97600 0.92993 0.91218 0.93689 0.90547 0.89340 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.28 71.23 0.73 -0.54 16 2 C 0.34 7.81 7.62 138.76 1.06 8.87 16 3 N -0.56 -12.64 10.30 -299.81 -3.09 -15.72 16 4 C 0.42 8.49 7.89 85.44 0.67 9.17 16 5 O -0.47 -6.00 12.91 -85.69 -1.11 -7.10 16 6 C -0.18 -4.10 5.76 -21.17 -0.12 -4.22 16 7 C -0.05 -0.86 9.58 22.21 0.21 -0.64 16 8 C -0.09 -2.14 9.62 22.30 0.21 -1.92 16 9 C -0.08 -2.16 5.02 -20.09 -0.10 -2.26 16 10 C 0.55 18.67 7.22 86.83 0.63 19.30 16 11 O -0.57 -21.60 16.45 -3.81 -0.06 -21.66 16 12 N -0.59 -20.49 2.98 -823.00 -2.45 -22.94 16 13 C 0.11 3.81 5.29 86.22 0.46 4.27 16 14 C -0.11 -5.10 5.14 30.53 0.16 -4.95 16 15 C 0.05 2.16 2.07 -11.51 -0.02 2.13 16 16 C -0.53 -28.41 8.56 25.60 0.22 -28.19 16 17 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 18 C 0.02 0.93 5.30 84.66 0.45 1.38 16 19 N -0.91 -50.55 11.31 21.45 0.24 -50.31 16 20 Si 0.95 42.78 29.54 68.60 2.03 44.80 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 C -0.11 -4.51 5.30 30.67 0.16 -4.34 16 25 C 0.12 4.02 6.43 86.36 0.55 4.58 16 26 C -0.08 -2.18 7.33 22.80 0.17 -2.01 16 27 C 0.16 4.20 6.61 40.09 0.26 4.47 16 28 N -0.53 -14.36 10.32 -181.79 -1.88 -16.23 16 29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.44 0.56 9.06 -74.06 -0.67 -0.11 16 33 H 0.18 1.91 7.70 -2.91 -0.02 1.89 16 34 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.09 2.96 4.56 -2.39 -0.01 2.95 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.08 3.96 6.03 -2.39 -0.01 3.94 16 38 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 41 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 42 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.09 2.97 7.02 -2.38 -0.02 2.95 16 45 H 0.15 4.07 7.02 -2.91 -0.02 4.05 16 Total: -1.00 -69.63 368.93 -0.24 -69.87 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.37 Total: 14.22 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 5.70 Total: 5.08 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -7.17 Total: -105.21 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.17 Total: -28.76 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -69.63 -0.24 -69.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897353593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.352 kcal (2) G-P(sol) polarization free energy of solvation -69.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds