Wall clock time and date at job start Sat Apr 11 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32439 * 118.53814 * 2 1 4 4 C 1.32323 * 121.53645 * 179.97438 * 3 2 1 5 5 O 1.35281 * 120.87169 * 179.97438 * 4 3 2 6 6 C 1.41584 * 118.25385 * 0.02562 * 4 3 2 7 7 C 1.40080 * 121.89952 * 180.02562 * 6 4 3 8 8 C 1.36065 * 119.86434 * 180.02562 * 7 6 4 9 9 C 1.40417 * 120.78439 * 0.02562 * 8 7 6 10 10 C 1.47994 * 119.72134 * 179.97438 * 9 8 7 11 11 O 1.21533 * 120.00101 * 41.56625 * 10 9 8 12 12 N 1.34782 * 120.00019 * 221.57518 * 10 9 8 13 13 C 1.46931 * 120.62677 * 5.83731 * 12 10 9 14 14 C 1.53192 * 108.77165 * 126.37341 * 13 12 10 15 15 C 1.53043 * 109.31482 * 54.63340 * 14 13 12 16 16 C 1.53042 * 109.53427 * 298.63234 * 15 14 13 17 17 H 1.08998 * 109.50028 * 301.41217 * 16 15 14 18 18 C 1.50704 * 109.49577 * 181.34927 * 16 15 14 19 19 H 1.08000 * 119.99748 * 359.97438 * 18 16 15 20 20 C 1.37871 * 120.00238 * 180.02562 * 18 16 15 21 21 N 1.31523 * 120.00008 * 359.97438 * 20 18 16 22 22 Si 1.86794 * 120.00385 * 179.97438 * 20 18 16 23 23 H 1.48511 * 109.47208 * 59.99920 * 22 20 18 24 24 H 1.48503 * 109.47449 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47210 * 300.00093 * 22 20 18 26 26 C 1.46915 * 120.62997 * 185.56143 * 12 10 9 27 27 C 1.38554 * 120.56336 * 359.74106 * 9 8 7 28 28 C 1.40122 * 119.36358 * 0.50287 * 27 9 8 29 29 N 1.31120 * 118.54029 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47056 * 269.97619 * 1 2 3 31 31 H 1.08999 * 109.47390 * 29.98092 * 1 2 3 32 32 H 1.09003 * 109.47279 * 149.97991 * 1 2 3 33 33 H 0.96695 * 114.00300 * 90.00275 * 5 4 3 34 34 H 1.08010 * 120.06711 * 359.97438 * 7 6 4 35 35 H 1.08001 * 119.61140 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.58554 * 246.15564 * 13 12 10 37 37 H 1.08998 * 109.58992 * 6.58603 * 13 12 10 38 38 H 1.09003 * 109.49798 * 174.58668 * 14 13 12 39 39 H 1.09004 * 109.49674 * 294.68030 * 14 13 12 40 40 H 1.08994 * 109.46230 * 58.65227 * 15 14 13 41 41 H 1.09002 * 109.45875 * 178.61472 * 15 14 13 42 42 H 0.96999 * 120.00155 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.59184 * 353.41578 * 26 12 10 44 44 H 1.09000 * 109.58838 * 113.84181 * 26 12 10 45 45 H 1.08001 * 120.31597 * 180.29217 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1397 1.1635 0.0000 4 6 3.4611 1.2327 0.0005 5 8 4.0936 2.4285 0.0000 6 6 4.1956 0.0223 0.0005 7 6 5.5963 0.0065 0.0015 8 6 6.2605 -1.1811 0.0010 9 6 5.5584 -2.3971 -0.0012 10 6 6.3047 -3.6752 -0.0024 11 8 7.2906 -3.8038 0.6965 12 7 5.8910 -4.6964 -0.7787 13 6 4.7798 -4.5164 -1.7230 14 6 5.2420 -4.9523 -3.1169 15 6 5.7819 -6.3826 -3.0469 16 6 6.9853 -6.4296 -2.1025 17 1 7.7556 -5.7465 -2.4603 18 6 7.5366 -7.8315 -2.0598 19 1 7.0749 -8.6115 -2.6471 20 6 8.6298 -8.1187 -1.2702 21 7 9.1917 -7.1690 -0.5546 22 14 9.3128 -9.8564 -1.2167 23 1 9.7383 -10.2633 -2.5802 24 1 10.4804 -9.9015 -0.3003 25 1 8.2631 -10.7860 -0.7278 26 6 6.5465 -6.0089 -0.7010 27 6 4.1730 -2.4108 0.0026 28 6 3.4739 -1.1965 -0.0021 29 7 2.1334 -1.1519 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 4.2771 2.7768 0.8832 34 1 6.1480 0.9351 0.0020 35 1 7.3405 -1.1885 0.0013 36 1 3.9327 -5.1274 -1.4112 37 1 4.4869 -3.4668 -1.7468 38 1 4.3996 -4.9148 -3.8078 39 1 6.0287 -4.2830 -3.4652 40 1 5.0023 -7.0473 -2.6751 41 1 6.0887 -6.7040 -4.0423 42 1 9.9610 -7.3709 0.0007 43 1 7.4189 -5.9438 -0.0507 44 1 5.8464 -6.7441 -0.3042 45 1 3.6370 -3.3485 0.0056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898581017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:29 Heat of formation + Delta-G solvation = -5.329401 kcal Electronic energy + Delta-G solvation = -29410.455804 eV Core-core repulsion = 25393.312359 eV Total energy + Delta-G solvation = -4017.143445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79685 -39.89776 -38.22302 -37.70776 -36.67822 -33.69181 -33.44516 -32.31758 -31.87989 -31.13582 -29.72188 -28.49592 -26.05046 -25.12440 -24.17567 -23.30299 -22.68574 -21.82234 -20.57069 -19.26806 -19.07365 -18.22825 -17.84018 -16.71155 -16.52570 -16.03926 -15.83191 -15.33563 -14.85326 -14.65874 -14.52423 -14.15972 -13.85299 -13.77313 -13.70296 -13.29618 -13.07818 -12.89388 -12.71908 -12.66287 -12.52541 -12.29817 -12.02082 -11.89470 -11.86344 -11.13414 -11.00120 -10.92534 -10.87872 -10.55363 -10.45929 -10.27500 -9.94149 -9.71976 -9.53274 -9.31344 -9.14251 -8.97662 -8.52263 -8.47023 -7.85925 -6.02807 -4.11905 -0.21577 0.29007 1.43236 2.40818 2.85278 3.20337 3.30114 3.36260 3.37362 3.45628 3.63453 3.77803 3.96880 4.26928 4.40232 4.46901 4.65082 4.85658 4.90576 5.04537 5.23174 5.25336 5.26852 5.27963 5.37200 5.45907 5.57281 5.60985 5.64549 5.85271 5.94066 5.96680 6.08004 6.13708 6.26609 6.27288 6.56419 6.61416 6.67608 6.80543 6.90768 6.93087 7.05888 7.17423 7.58538 7.78357 7.82164 7.93772 8.11849 8.33859 8.65108 8.92094 9.53991 11.02437 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021686 B = 0.002664 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.820517 B =10506.288993 C =11214.448460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.339 3.661 3 N -0.545 5.545 4 C 0.409 3.591 5 O -0.469 6.469 6 C -0.171 4.171 7 C -0.074 4.074 8 C -0.077 4.077 9 C -0.064 4.064 10 C 0.542 3.458 11 O -0.521 6.521 12 N -0.593 5.593 13 C 0.098 3.902 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.111 3.889 27 C -0.076 4.076 28 C 0.169 3.831 29 N -0.504 5.504 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.412 0.588 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.264 0.736 43 H 0.125 0.875 44 H 0.046 0.954 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.123 17.199 1.618 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 N -0.271 5.271 4 C 0.208 3.792 5 O -0.277 6.277 6 C -0.177 4.177 7 C -0.095 4.095 8 C -0.096 4.096 9 C -0.070 4.070 10 C 0.328 3.672 11 O -0.398 6.398 12 N -0.325 5.325 13 C -0.025 4.025 14 C -0.172 4.172 15 C -0.149 4.149 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.008 4.008 27 C -0.095 4.095 28 C 0.043 3.957 29 N -0.220 5.220 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.273 0.727 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.143 0.857 44 H 0.065 0.935 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.428 16.956 1.536 22.316 hybrid contribution 1.364 -0.700 0.438 1.594 sum -13.064 16.256 1.974 20.948 Atomic orbital electron populations 1.20613 0.85276 1.04387 1.04044 1.22955 0.97924 0.81913 0.90148 1.67685 1.10058 1.31480 1.17836 1.19599 0.86745 0.84768 0.88127 1.84622 1.76001 1.32663 1.34420 1.19660 0.96401 0.94120 1.07509 1.20766 0.91628 0.99070 0.98024 1.21039 1.01501 0.90321 0.96698 1.20459 0.93363 0.95382 0.97841 1.18205 0.84420 0.83026 0.81596 1.90835 1.25084 1.81779 1.42114 1.48483 1.33873 1.12883 1.37282 1.21998 0.89433 1.00997 0.90122 1.21953 1.00434 0.99522 0.95294 1.21636 0.99336 0.93300 1.00591 1.18888 0.92018 0.97026 0.89964 0.95255 1.21032 1.13404 0.94325 1.27254 0.92348 1.25055 0.96486 0.97133 0.95345 1.69870 1.22259 1.31963 1.27727 0.86641 0.78543 0.84810 0.77917 1.20273 1.21246 1.20229 1.22311 0.97782 0.77812 1.02938 1.21301 0.92510 0.97186 0.98531 1.18701 0.89079 0.92332 0.95577 1.68610 1.08141 1.29206 1.16069 0.89451 0.89531 0.89240 0.72732 0.83841 0.83797 0.91521 0.90587 0.92059 0.92120 0.93075 0.92906 0.92545 0.85722 0.93524 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.28 36.00 0.37 -0.26 16 2 C 0.34 3.86 7.62 -157.22 -1.20 2.66 16 3 N -0.54 -6.34 10.30 -10.38 -0.11 -6.45 16 4 C 0.41 4.42 7.89 -16.07 -0.13 4.30 16 5 O -0.47 -3.70 12.91 -17.53 -0.23 -3.93 16 6 C -0.17 -2.02 5.76 -106.63 -0.61 -2.63 16 7 C -0.07 -0.79 9.58 -39.67 -0.38 -1.17 16 8 C -0.08 -1.00 9.54 -39.54 -0.38 -1.37 16 9 C -0.06 -0.97 5.08 -104.96 -0.53 -1.50 16 10 C 0.54 10.57 7.29 -12.26 -0.09 10.48 16 11 O -0.52 -12.31 16.35 5.34 0.09 -12.23 16 12 N -0.59 -11.56 2.98 -174.09 -0.52 -12.08 16 13 C 0.10 1.52 4.92 -3.71 -0.02 1.50 16 14 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 15 C -0.11 -2.16 5.11 -26.69 -0.14 -2.30 16 16 C 0.04 0.97 2.24 -91.87 -0.21 0.76 16 17 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 18 C -0.52 -13.88 8.57 -34.44 -0.29 -14.17 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.88 -25.26 11.39 55.43 0.63 -24.63 16 22 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.11 2.61 5.39 -3.94 -0.02 2.59 16 27 C -0.08 -1.04 7.37 -38.76 -0.29 -1.32 16 28 C 0.17 2.24 6.61 -84.86 -0.56 1.68 16 29 N -0.50 -6.50 10.32 -8.81 -0.09 -6.59 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.41 1.04 9.06 45.56 0.41 1.46 16 34 H 0.14 1.10 7.70 -52.48 -0.40 0.69 16 35 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 37 H 0.08 1.05 4.83 -51.93 -0.25 0.80 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.12 3.43 5.11 -51.93 -0.27 3.17 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.15 1.99 6.72 -52.49 -0.35 1.64 16 LS Contribution 368.66 15.07 5.56 5.56 Total: -1.00 -33.42 368.66 -9.47 -42.89 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.05 Total: 2.94 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -4.73 Total: -1.45 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.08 Total: -49.75 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.14 Total: -16.15 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.42 -9.47 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898581017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.558 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds