Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32439 * 118.53814 * 2 1 4 4 C 1.32323 * 121.53645 * 179.97438 * 3 2 1 5 5 O 1.35281 * 120.87169 * 179.97438 * 4 3 2 6 6 C 1.41584 * 118.25385 * 0.02562 * 4 3 2 7 7 C 1.40080 * 121.89952 * 180.02562 * 6 4 3 8 8 C 1.36065 * 119.86434 * 180.02562 * 7 6 4 9 9 C 1.40417 * 120.78439 * 0.02562 * 8 7 6 10 10 C 1.47994 * 119.72134 * 179.97438 * 9 8 7 11 11 O 1.21533 * 120.00101 * 41.56625 * 10 9 8 12 12 N 1.34782 * 120.00019 * 221.57518 * 10 9 8 13 13 C 1.46931 * 120.62677 * 5.83731 * 12 10 9 14 14 C 1.53192 * 108.77165 * 126.37341 * 13 12 10 15 15 C 1.53043 * 109.31482 * 54.63340 * 14 13 12 16 16 C 1.53042 * 109.53427 * 298.63234 * 15 14 13 17 17 H 1.08998 * 109.50028 * 301.41217 * 16 15 14 18 18 C 1.50704 * 109.49577 * 181.34927 * 16 15 14 19 19 H 1.08000 * 119.99748 * 359.97438 * 18 16 15 20 20 C 1.37871 * 120.00238 * 180.02562 * 18 16 15 21 21 N 1.31523 * 120.00008 * 359.97438 * 20 18 16 22 22 Si 1.86794 * 120.00385 * 179.97438 * 20 18 16 23 23 H 1.48511 * 109.47208 * 59.99920 * 22 20 18 24 24 H 1.48503 * 109.47449 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47210 * 300.00093 * 22 20 18 26 26 C 1.46915 * 120.62997 * 185.56143 * 12 10 9 27 27 C 1.38554 * 120.56336 * 359.74106 * 9 8 7 28 28 C 1.40122 * 119.36358 * 0.50287 * 27 9 8 29 29 N 1.31120 * 118.54029 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47056 * 269.97619 * 1 2 3 31 31 H 1.08999 * 109.47390 * 29.98092 * 1 2 3 32 32 H 1.09003 * 109.47279 * 149.97991 * 1 2 3 33 33 H 0.96695 * 114.00300 * 90.00275 * 5 4 3 34 34 H 1.08010 * 120.06711 * 359.97438 * 7 6 4 35 35 H 1.08001 * 119.61140 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.58554 * 246.15564 * 13 12 10 37 37 H 1.08998 * 109.58992 * 6.58603 * 13 12 10 38 38 H 1.09003 * 109.49798 * 174.58668 * 14 13 12 39 39 H 1.09004 * 109.49674 * 294.68030 * 14 13 12 40 40 H 1.08994 * 109.46230 * 58.65227 * 15 14 13 41 41 H 1.09002 * 109.45875 * 178.61472 * 15 14 13 42 42 H 0.96999 * 120.00155 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.59184 * 353.41578 * 26 12 10 44 44 H 1.09000 * 109.58838 * 113.84181 * 26 12 10 45 45 H 1.08001 * 120.31597 * 180.29217 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1397 1.1635 0.0000 4 6 3.4611 1.2327 0.0005 5 8 4.0936 2.4285 0.0000 6 6 4.1956 0.0223 0.0005 7 6 5.5963 0.0065 0.0015 8 6 6.2605 -1.1811 0.0010 9 6 5.5584 -2.3971 -0.0012 10 6 6.3047 -3.6752 -0.0024 11 8 7.2906 -3.8038 0.6965 12 7 5.8910 -4.6964 -0.7787 13 6 4.7798 -4.5164 -1.7230 14 6 5.2420 -4.9523 -3.1169 15 6 5.7819 -6.3826 -3.0469 16 6 6.9853 -6.4296 -2.1025 17 1 7.7556 -5.7465 -2.4603 18 6 7.5366 -7.8315 -2.0598 19 1 7.0749 -8.6115 -2.6471 20 6 8.6298 -8.1187 -1.2702 21 7 9.1917 -7.1690 -0.5546 22 14 9.3128 -9.8564 -1.2167 23 1 9.7383 -10.2633 -2.5802 24 1 10.4804 -9.9015 -0.3003 25 1 8.2631 -10.7860 -0.7278 26 6 6.5465 -6.0089 -0.7010 27 6 4.1730 -2.4108 0.0026 28 6 3.4739 -1.1965 -0.0021 29 7 2.1334 -1.1519 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 4.2771 2.7768 0.8832 34 1 6.1480 0.9351 0.0020 35 1 7.3405 -1.1885 0.0013 36 1 3.9327 -5.1274 -1.4112 37 1 4.4869 -3.4668 -1.7468 38 1 4.3996 -4.9148 -3.8078 39 1 6.0287 -4.2830 -3.4652 40 1 5.0023 -7.0473 -2.6751 41 1 6.0887 -6.7040 -4.0423 42 1 9.9610 -7.3709 0.0007 43 1 7.4189 -5.9438 -0.0507 44 1 5.8464 -6.7441 -0.3042 45 1 3.6370 -3.3485 0.0056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898581017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = -29.735637 kcal Electronic energy + Delta-G solvation = -29411.514138 eV Core-core repulsion = 25393.312359 eV Total energy + Delta-G solvation = -4018.201778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.70392 -41.31204 -39.02596 -38.80413 -38.20844 -35.42243 -34.39920 -33.73586 -33.03646 -32.23406 -31.38382 -29.29672 -27.47229 -26.89191 -25.42617 -24.23438 -23.76246 -23.29192 -21.99128 -20.57028 -19.98997 -19.19486 -19.10878 -18.37942 -17.76442 -17.36799 -16.90784 -16.68629 -16.51963 -15.85357 -15.65409 -15.38859 -15.23505 -15.03311 -14.66277 -14.48832 -14.42784 -14.17581 -13.96291 -13.83676 -13.66022 -13.50419 -13.26660 -12.91183 -12.85154 -12.79930 -12.61988 -12.29684 -12.26646 -12.00029 -11.85039 -11.72615 -11.65712 -11.26319 -10.98812 -10.85296 -10.53338 -10.46724 -10.36203 -9.52289 -9.44830 -8.11399 -6.28656 -1.12418 -0.66278 0.50979 1.33467 1.41423 1.42565 1.50914 1.84917 2.06623 2.14921 2.41965 2.72849 2.83483 3.04818 3.16570 3.31240 3.47687 3.71103 3.84122 3.98210 4.01740 4.09613 4.21241 4.28554 4.41555 4.53384 4.57346 4.69339 4.74805 4.75576 4.80257 4.81996 4.88622 4.93497 5.05422 5.09495 5.20285 5.22983 5.28459 5.31643 5.37258 5.49026 5.59067 5.80232 5.87397 5.97327 6.30885 6.43056 6.49757 6.83516 6.93348 7.10548 7.41635 8.91914 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021686 B = 0.002664 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.820517 B =10506.288993 C =11214.448460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.338 3.662 3 N -0.556 5.556 4 C 0.424 3.576 5 O -0.466 6.466 6 C -0.181 4.181 7 C -0.045 4.045 8 C -0.096 4.096 9 C -0.073 4.073 10 C 0.538 3.462 11 O -0.576 6.576 12 N -0.597 5.597 13 C 0.096 3.904 14 C -0.127 4.127 15 C -0.105 4.105 16 C 0.039 3.961 17 H -0.014 1.014 18 C -0.536 4.536 19 H 0.063 0.937 20 C 0.010 3.990 21 N -0.915 5.915 22 Si 0.958 3.042 23 H -0.269 1.269 24 H -0.289 1.289 25 H -0.267 1.267 26 C 0.124 3.876 27 C -0.073 4.073 28 C 0.159 3.841 29 N -0.525 5.525 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.437 0.563 34 H 0.180 0.820 35 H 0.140 0.860 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.260 0.740 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.822 18.990 0.818 25.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 N -0.283 5.283 4 C 0.222 3.778 5 O -0.278 6.278 6 C -0.187 4.187 7 C -0.065 4.065 8 C -0.115 4.115 9 C -0.080 4.080 10 C 0.326 3.674 11 O -0.457 6.457 12 N -0.327 5.327 13 C -0.025 4.025 14 C -0.165 4.165 15 C -0.142 4.142 16 C 0.020 3.980 17 H 0.005 0.995 18 C -0.575 4.575 19 H 0.081 0.919 20 C -0.189 4.189 21 N -0.554 5.554 22 Si 0.783 3.217 23 H -0.194 1.194 24 H -0.215 1.215 25 H -0.192 1.192 26 C 0.002 3.998 27 C -0.092 4.092 28 C 0.033 3.967 29 N -0.242 5.242 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.303 0.697 34 H 0.197 0.803 35 H 0.158 0.842 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.164 18.769 0.720 25.444 hybrid contribution 2.126 -1.085 0.691 2.485 sum -15.038 17.684 1.411 23.257 Atomic orbital electron populations 1.20770 0.82761 1.05347 1.05295 1.23703 0.99463 0.81495 0.88355 1.67851 1.10324 1.31510 1.18569 1.19664 0.86603 0.85282 0.86231 1.84584 1.75484 1.31184 1.36568 1.19838 0.96828 0.94291 1.07731 1.21027 0.91263 0.99318 0.94880 1.21041 1.01444 0.90477 0.98522 1.20037 0.93730 0.93565 1.00623 1.18892 0.83894 0.84268 0.80343 1.90792 1.27722 1.82947 1.44234 1.48464 1.34551 1.11571 1.38150 1.22286 0.88456 1.02960 0.88829 1.21925 1.01473 0.96665 0.96450 1.21520 0.97477 0.96083 0.99153 1.18820 0.92956 0.94901 0.91364 0.99541 1.21472 1.13537 0.95618 1.26835 0.91878 1.25889 0.97016 1.00947 0.95061 1.70073 1.22605 1.34055 1.28617 0.85617 0.77825 0.80210 0.78062 1.19399 1.21491 1.19165 1.21732 0.96439 0.79984 1.01596 1.21195 0.91623 0.97846 0.98538 1.18760 0.89662 0.92496 0.95732 1.68657 1.07879 1.30033 1.17620 0.87881 0.88290 0.88509 0.69737 0.80309 0.84248 0.89363 0.88319 0.87875 0.93244 0.92103 0.92812 0.93070 0.90127 0.93788 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.28 71.23 0.73 -0.26 16 2 C 0.34 6.79 7.62 138.75 1.06 7.85 16 3 N -0.56 -11.26 10.30 -299.80 -3.09 -14.35 16 4 C 0.42 7.78 7.89 85.44 0.67 8.46 16 5 O -0.47 -5.48 12.91 -85.66 -1.11 -6.59 16 6 C -0.18 -3.82 5.76 -21.17 -0.12 -3.94 16 7 C -0.04 -0.85 9.58 22.21 0.21 -0.64 16 8 C -0.10 -2.46 9.54 22.29 0.21 -2.25 16 9 C -0.07 -2.24 5.08 -20.08 -0.10 -2.35 16 10 C 0.54 22.09 7.29 86.83 0.63 22.73 16 11 O -0.58 -29.35 16.35 -3.82 -0.06 -29.42 16 12 N -0.60 -24.06 2.98 -822.97 -2.45 -26.51 16 13 C 0.10 2.88 4.92 86.36 0.42 3.30 16 14 C -0.13 -3.89 6.08 30.67 0.19 -3.70 16 15 C -0.10 -4.04 5.11 30.62 0.16 -3.88 16 16 C 0.04 1.95 2.24 -11.60 -0.03 1.93 16 17 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 18 C -0.54 -29.37 8.57 25.60 0.22 -29.15 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 20 C 0.01 0.58 5.30 84.65 0.45 1.03 16 21 N -0.91 -55.42 11.39 21.45 0.24 -55.18 16 22 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 C 0.12 6.16 5.39 86.22 0.46 6.62 16 27 C -0.07 -1.93 7.37 22.80 0.17 -1.76 16 28 C 0.16 3.94 6.61 40.09 0.26 4.20 16 29 N -0.52 -12.45 10.32 -181.79 -1.88 -14.33 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.44 0.34 9.06 -74.06 -0.67 -0.33 16 34 H 0.18 2.04 7.70 -2.91 -0.02 2.02 16 35 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 36 H 0.09 2.30 8.13 -2.39 -0.02 2.28 16 37 H 0.10 2.57 4.83 -2.39 -0.01 2.55 16 38 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 43 H 0.08 4.78 5.11 -2.39 -0.01 4.77 16 44 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.15 3.90 6.72 -2.91 -0.02 3.88 16 Total: -1.00 -77.77 368.66 -0.33 -78.10 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.37 Total: 13.97 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 5.61 Total: 8.21 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -7.17 Total: -110.37 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.17 Total: -36.00 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -77.77 -0.33 -78.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898581017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.365 kcal (2) G-P(sol) polarization free energy of solvation -77.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds