Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31134 * 126.54800 * 2 1 4 4 C 1.34498 * 105.61507 * 179.97438 * 3 2 1 5 5 C 1.50693 * 126.28746 * 179.97438 * 4 3 2 6 6 H 1.08994 * 110.88979 * 357.57586 * 5 4 3 7 7 C 1.55163 * 111.00147 * 121.45200 * 5 4 3 8 8 C 1.54326 * 102.94309 * 153.57565 * 7 5 4 9 9 N 1.47029 * 107.27065 * 337.81092 * 8 7 5 10 10 C 1.34772 * 125.64583 * 178.98691 * 9 8 7 11 11 O 1.21290 * 119.99332 * 179.97438 * 10 9 8 12 12 C 1.50696 * 120.00519 * 359.97264 * 10 9 8 13 13 C 1.50700 * 109.47253 * 179.97438 * 12 10 9 14 14 C 1.37634 * 120.12800 * 264.99594 * 13 12 10 15 15 C 1.38615 * 120.24469 * 179.97438 * 14 13 12 16 16 C 1.38653 * 120.50408 * 0.03190 * 15 14 13 17 17 C 1.37601 * 120.24811 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.12353 * 84.72561 * 13 12 10 19 19 C 1.41399 * 120.24536 * 359.97438 * 18 13 12 20 20 H 1.07997 * 119.99902 * 333.89428 * 19 18 13 21 21 C 1.39949 * 119.99714 * 153.89510 * 19 18 13 22 22 N 1.30825 * 120.00266 * 343.71527 * 21 19 18 23 23 Si 1.86798 * 119.99636 * 163.70645 * 21 19 18 24 24 H 1.48501 * 109.46938 * 94.96840 * 23 21 19 25 25 H 1.48499 * 109.47405 * 214.96651 * 23 21 19 26 26 H 1.48499 * 109.47504 * 334.97091 * 23 21 19 27 27 C 1.47428 * 108.70102 * 358.93755 * 9 8 7 28 28 N 1.29947 * 107.41987 * 359.97438 * 4 3 2 29 29 O 1.21296 * 110.25625 * 0.02562 * 28 4 3 30 30 H 1.08997 * 109.46845 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47268 * 300.00781 * 1 2 3 32 32 H 1.08995 * 109.47133 * 60.00793 * 1 2 3 33 33 H 1.08992 * 110.72282 * 271.94313 * 7 5 4 34 34 H 1.09007 * 110.71785 * 35.21611 * 7 5 4 35 35 H 1.08997 * 109.88294 * 97.22118 * 8 7 5 36 36 H 1.09001 * 109.88459 * 218.39723 * 8 7 5 37 37 H 1.09006 * 109.46804 * 300.00369 * 12 10 9 38 38 H 1.09001 * 109.47183 * 60.00261 * 12 10 9 39 39 H 1.07994 * 119.87832 * 0.02562 * 14 13 12 40 40 H 1.08007 * 119.74529 * 180.02562 * 15 14 13 41 41 H 1.07998 * 119.87716 * 179.97438 * 16 15 14 42 42 H 1.08003 * 120.12599 * 179.97438 * 17 16 15 43 43 H 0.96996 * 119.99928 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36641 * 265.28930 * 27 9 8 45 45 H 1.08999 * 110.36340 * 142.96989 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8111 1.3888 0.0003 6 1 4.5870 2.4546 -0.0436 7 6 5.6876 1.0553 1.2364 8 6 7.1130 1.3929 0.7507 9 7 7.0966 1.3435 -0.7187 10 6 8.1461 1.5982 -1.5248 11 8 8.0174 1.5265 -2.7287 12 6 9.4796 1.9721 -0.9306 13 6 10.4759 2.2027 -2.0374 14 6 11.3110 1.1847 -2.4383 15 6 12.2280 1.3940 -3.4565 16 6 12.3159 2.6284 -4.0819 17 6 11.4918 3.6608 -3.6966 18 6 10.5522 3.4578 -2.6687 19 6 9.6951 4.5091 -2.2695 20 1 8.7393 4.2852 -1.8193 21 6 10.0854 5.8399 -2.4577 22 7 11.3392 6.1262 -2.6973 23 14 8.8159 7.2072 -2.3672 24 1 8.7989 7.7768 -0.9959 25 1 9.1651 8.2722 -3.3414 26 1 7.4744 6.6595 -2.6923 27 6 5.7423 0.9680 -1.1639 28 7 3.4645 -0.7241 0.0015 29 8 2.3030 -1.0735 0.0009 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 5.4112 1.6805 2.0852 34 1 5.6075 -0.0014 1.4921 35 1 7.3914 2.3924 1.0848 36 1 7.8202 0.6596 1.1384 37 1 9.3723 2.8834 -0.3420 38 1 9.8307 1.1642 -0.2887 39 1 11.2510 0.2191 -1.9584 40 1 12.8791 0.5894 -3.7650 41 1 13.0343 2.7804 -4.8737 42 1 11.5622 4.6216 -4.1847 43 1 11.6096 7.0485 -2.8281 44 1 5.6817 -0.1079 -1.3283 45 1 5.4791 1.5070 -2.0740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927330646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = 52.729322 kcal Electronic energy + Delta-G solvation = -28882.748943 eV Core-core repulsion = 24868.123113 eV Total energy + Delta-G solvation = -4014.625829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.87763 -39.82635 -37.98063 -36.93010 -35.94960 -33.96894 -33.58505 -31.94669 -31.12921 -29.46059 -29.39028 -29.01095 -26.93530 -25.16677 -24.36035 -23.55569 -22.69874 -20.89627 -20.51309 -20.00305 -18.74278 -18.33325 -17.91115 -17.12722 -16.62923 -16.20615 -15.49432 -15.19954 -14.74425 -14.53995 -14.29429 -13.98268 -13.90183 -13.63777 -13.57956 -13.47099 -13.26916 -12.64937 -12.57637 -12.50303 -12.44295 -12.22731 -11.76726 -11.64088 -11.53637 -11.39928 -11.29068 -11.14273 -11.04061 -10.93496 -10.92028 -10.66664 -10.36297 -10.08053 -9.44693 -9.34462 -9.18520 -9.11635 -8.37780 -7.27353 -7.25473 -6.70189 -4.30599 0.85934 1.90655 2.52173 2.79327 2.93247 3.08958 3.14714 3.16186 3.30009 3.31982 3.52197 3.74630 3.96773 4.30754 4.45352 4.50994 4.69791 4.75211 4.81798 4.91622 5.09187 5.15877 5.26405 5.37009 5.44742 5.51821 5.62186 5.71285 5.75808 5.80803 5.85263 5.95008 6.04626 6.12492 6.32283 6.46137 6.53021 6.56651 6.83555 7.12233 7.33553 7.46168 7.67481 7.85632 7.90526 7.97375 8.11262 8.16929 8.35376 8.68276 8.81401 8.95510 9.05413 10.23943 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013706 B = 0.002789 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.370283 B =10038.312691 C =11338.423082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.174 3.826 3 N -0.480 5.480 4 C 0.189 3.811 5 C -0.017 4.017 6 H 0.118 0.882 7 C -0.120 4.120 8 C 0.105 3.895 9 N -0.631 5.631 10 C 0.533 3.467 11 O -0.516 6.516 12 C -0.063 4.063 13 C -0.183 4.183 14 C -0.080 4.080 15 C -0.240 4.240 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.455 4.455 20 H 0.073 0.927 21 C 0.077 3.923 22 N -0.795 5.795 23 Si 0.901 3.099 24 H -0.271 1.271 25 H -0.275 1.275 26 H -0.261 1.261 27 C 0.120 3.880 28 N -0.377 5.377 29 O 0.078 5.922 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.068 0.932 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.505 -8.571 10.331 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.046 4.046 3 N -0.214 5.214 4 C -0.085 4.085 5 C -0.038 4.038 6 H 0.136 0.864 7 C -0.158 4.158 8 C -0.019 4.019 9 N -0.369 5.369 10 C 0.323 3.677 11 O -0.389 6.389 12 C -0.103 4.103 13 C -0.185 4.185 14 C -0.099 4.099 15 C -0.259 4.259 16 C -0.125 4.125 17 C -0.179 4.179 18 C 0.127 3.873 19 C -0.485 4.485 20 H 0.091 0.909 21 C -0.140 4.140 22 N -0.421 5.421 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.185 1.185 27 C -0.004 4.004 28 N -0.083 5.083 29 O 0.018 5.982 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.517 -8.468 9.557 21.677 hybrid contribution -0.741 0.639 0.063 0.981 sum -18.257 -7.829 9.620 22.072 Atomic orbital electron populations 1.20388 0.80193 1.05597 1.05724 1.28861 0.98963 0.80802 0.95968 1.71898 1.00228 1.28932 1.20356 1.25390 0.94578 0.88047 1.00437 1.20741 0.86391 0.99062 0.97587 0.86423 1.22743 0.93499 1.02975 0.96631 1.21977 0.96584 1.02336 0.80985 1.48636 1.09929 1.71813 1.06570 1.21063 0.84748 0.75351 0.86512 1.90698 1.83636 1.50052 1.14527 1.20237 0.89943 1.01912 0.98176 1.19075 1.01476 0.96355 1.01615 1.20298 0.96392 0.96069 0.97117 1.20307 1.04837 0.97158 1.03605 1.20676 0.98986 0.93915 0.98948 1.21297 0.99255 0.98220 0.99078 1.17340 0.90570 0.90691 0.88732 1.19460 1.03208 0.89908 1.35921 0.90851 1.25875 0.95352 1.00252 0.92552 1.69822 1.16139 1.21022 1.35124 0.86412 0.82042 0.80227 0.78762 1.19599 1.20019 1.18506 1.22030 0.81707 1.00351 0.96303 1.74625 0.97170 1.15604 1.20937 1.85316 1.11469 1.35771 1.65633 0.88487 0.87858 0.87810 0.89277 0.90061 0.90564 0.90905 0.88519 0.90627 0.89782 0.89658 0.89576 0.86501 0.91006 0.91368 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 36.01 0.38 0.20 16 2 C 0.17 1.48 8.51 -13.06 -0.11 1.37 16 3 N -0.48 -5.50 11.55 -9.87 -0.11 -5.62 16 4 C 0.19 2.31 6.88 -156.37 -1.08 1.23 16 5 C -0.02 -0.20 3.57 -89.62 -0.32 -0.52 16 6 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 7 C -0.12 -1.19 6.41 -24.89 -0.16 -1.35 16 8 C 0.10 1.23 6.49 -3.06 -0.02 1.21 16 9 N -0.63 -10.20 3.33 -170.51 -0.57 -10.77 16 10 C 0.53 11.01 7.46 -10.99 -0.08 10.93 16 11 O -0.52 -13.01 16.29 5.55 0.09 -12.92 16 12 C -0.06 -1.28 4.37 -29.04 -0.13 -1.41 16 13 C -0.18 -4.53 4.43 -103.91 -0.46 -4.99 16 14 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 15 C -0.24 -5.72 10.05 -39.29 -0.39 -6.12 16 16 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 17 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 18 C 0.13 3.52 5.56 -106.82 -0.59 2.93 16 19 C -0.46 -12.17 8.14 -37.74 -0.31 -12.48 16 20 H 0.07 1.92 6.67 -52.49 -0.35 1.57 16 21 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 22 N -0.80 -20.77 10.96 55.55 0.61 -20.16 16 23 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 27 C 0.12 1.79 6.36 -2.53 -0.02 1.77 16 28 N -0.38 -4.69 11.87 30.90 0.37 -4.32 16 29 O 0.08 0.80 11.31 18.11 0.20 1.00 16 30 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 31 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.81 7.97 -51.92 -0.41 0.40 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.91 7.08 -51.93 -0.37 1.55 16 38 H 0.08 1.30 8.05 -51.93 -0.42 0.88 16 39 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 41 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 42 H 0.12 3.26 6.20 -52.48 -0.33 2.94 16 43 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 44 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 45 H 0.08 1.35 8.04 -51.93 -0.42 0.94 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -34.15 379.81 -9.28 -43.42 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.06 Total: 4.95 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -4.50 Total: -15.40 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.29 Total: -40.86 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.30 Total: -11.92 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.15 -9.28 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927330646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.153 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds