Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31134 * 126.54800 * 2 1 4 4 C 1.34498 * 105.61507 * 179.97438 * 3 2 1 5 5 C 1.50693 * 126.28746 * 179.97438 * 4 3 2 6 6 H 1.08994 * 110.88979 * 357.57586 * 5 4 3 7 7 C 1.55163 * 111.00147 * 121.45200 * 5 4 3 8 8 C 1.54326 * 102.94309 * 153.57565 * 7 5 4 9 9 N 1.47029 * 107.27065 * 337.81092 * 8 7 5 10 10 C 1.34772 * 125.64583 * 178.98691 * 9 8 7 11 11 O 1.21290 * 119.99332 * 179.97438 * 10 9 8 12 12 C 1.50696 * 120.00519 * 359.97264 * 10 9 8 13 13 C 1.50700 * 109.47253 * 179.97438 * 12 10 9 14 14 C 1.37634 * 120.12800 * 264.99594 * 13 12 10 15 15 C 1.38615 * 120.24469 * 179.97438 * 14 13 12 16 16 C 1.38653 * 120.50408 * 0.03190 * 15 14 13 17 17 C 1.37601 * 120.24811 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.12353 * 84.72561 * 13 12 10 19 19 C 1.41399 * 120.24536 * 359.97438 * 18 13 12 20 20 H 1.07997 * 119.99902 * 333.89428 * 19 18 13 21 21 C 1.39949 * 119.99714 * 153.89510 * 19 18 13 22 22 N 1.30825 * 120.00266 * 343.71527 * 21 19 18 23 23 Si 1.86798 * 119.99636 * 163.70645 * 21 19 18 24 24 H 1.48501 * 109.46938 * 94.96840 * 23 21 19 25 25 H 1.48499 * 109.47405 * 214.96651 * 23 21 19 26 26 H 1.48499 * 109.47504 * 334.97091 * 23 21 19 27 27 C 1.47428 * 108.70102 * 358.93755 * 9 8 7 28 28 N 1.29947 * 107.41987 * 359.97438 * 4 3 2 29 29 O 1.21296 * 110.25625 * 0.02562 * 28 4 3 30 30 H 1.08997 * 109.46845 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47268 * 300.00781 * 1 2 3 32 32 H 1.08995 * 109.47133 * 60.00793 * 1 2 3 33 33 H 1.08992 * 110.72282 * 271.94313 * 7 5 4 34 34 H 1.09007 * 110.71785 * 35.21611 * 7 5 4 35 35 H 1.08997 * 109.88294 * 97.22118 * 8 7 5 36 36 H 1.09001 * 109.88459 * 218.39723 * 8 7 5 37 37 H 1.09006 * 109.46804 * 300.00369 * 12 10 9 38 38 H 1.09001 * 109.47183 * 60.00261 * 12 10 9 39 39 H 1.07994 * 119.87832 * 0.02562 * 14 13 12 40 40 H 1.08007 * 119.74529 * 180.02562 * 15 14 13 41 41 H 1.07998 * 119.87716 * 179.97438 * 16 15 14 42 42 H 1.08003 * 120.12599 * 179.97438 * 17 16 15 43 43 H 0.96996 * 119.99928 * 179.97438 * 22 21 19 44 44 H 1.09002 * 110.36641 * 265.28930 * 27 9 8 45 45 H 1.08999 * 110.36340 * 142.96989 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8111 1.3888 0.0003 6 1 4.5870 2.4546 -0.0436 7 6 5.6876 1.0553 1.2364 8 6 7.1130 1.3929 0.7507 9 7 7.0966 1.3435 -0.7187 10 6 8.1461 1.5982 -1.5248 11 8 8.0174 1.5265 -2.7287 12 6 9.4796 1.9721 -0.9306 13 6 10.4759 2.2027 -2.0374 14 6 11.3110 1.1847 -2.4383 15 6 12.2280 1.3940 -3.4565 16 6 12.3159 2.6284 -4.0819 17 6 11.4918 3.6608 -3.6966 18 6 10.5522 3.4578 -2.6687 19 6 9.6951 4.5091 -2.2695 20 1 8.7393 4.2852 -1.8193 21 6 10.0854 5.8399 -2.4577 22 7 11.3392 6.1262 -2.6973 23 14 8.8159 7.2072 -2.3672 24 1 8.7989 7.7768 -0.9959 25 1 9.1651 8.2722 -3.3414 26 1 7.4744 6.6595 -2.6923 27 6 5.7423 0.9680 -1.1639 28 7 3.4645 -0.7241 0.0015 29 8 2.3030 -1.0735 0.0009 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 5.4112 1.6805 2.0852 34 1 5.6075 -0.0014 1.4921 35 1 7.3914 2.3924 1.0848 36 1 7.8202 0.6596 1.1384 37 1 9.3723 2.8834 -0.3420 38 1 9.8307 1.1642 -0.2887 39 1 11.2510 0.2191 -1.9584 40 1 12.8791 0.5894 -3.7650 41 1 13.0343 2.7804 -4.8737 42 1 11.5622 4.6216 -4.1847 43 1 11.6096 7.0485 -2.8281 44 1 5.6817 -0.1079 -1.3283 45 1 5.4791 1.5070 -2.0740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927330646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = 30.857646 kcal Electronic energy + Delta-G solvation = -28883.697370 eV Core-core repulsion = 24868.123113 eV Total energy + Delta-G solvation = -4015.574256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.68806 -41.20939 -39.56996 -38.50783 -36.84714 -35.51110 -34.78482 -33.55876 -32.38767 -31.35237 -30.37542 -29.66083 -28.59646 -26.99319 -25.55579 -24.51451 -23.61703 -22.83578 -21.85917 -21.26329 -20.17641 -19.18817 -19.05436 -18.77633 -18.07184 -17.33818 -17.27682 -16.44548 -16.16409 -15.86828 -15.77554 -15.37492 -15.06375 -14.81842 -14.60505 -14.39142 -14.18645 -14.09064 -13.90744 -13.64404 -13.51361 -13.39539 -13.34943 -12.98341 -12.90985 -12.76319 -12.69619 -12.64762 -12.50951 -12.22390 -12.14285 -12.12612 -11.85998 -11.33835 -11.22962 -11.02706 -10.91816 -10.81084 -9.71465 -9.23883 -9.18230 -8.60444 -6.30354 0.12867 0.96784 1.07464 1.12112 1.34799 1.46377 1.52602 1.72075 1.89031 1.96284 2.19306 2.59009 2.77344 2.93722 3.30374 3.51001 3.71948 3.73586 4.05277 4.08511 4.16130 4.24519 4.34197 4.39163 4.49738 4.54124 4.56948 4.64198 4.65515 4.67743 4.69408 4.76341 4.79633 4.86034 4.97845 5.03575 5.07666 5.14635 5.18626 5.30134 5.35687 5.53622 5.76022 6.02313 6.15210 6.20100 6.40823 6.47462 6.72463 6.98236 7.09865 7.13424 7.26226 8.36153 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013706 B = 0.002789 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.370283 B =10038.312691 C =11338.423082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.190 3.810 3 N -0.511 5.511 4 C 0.178 3.822 5 C -0.009 4.009 6 H 0.119 0.881 7 C -0.105 4.105 8 C 0.095 3.905 9 N -0.626 5.626 10 C 0.532 3.468 11 O -0.576 6.576 12 C -0.058 4.058 13 C -0.192 4.192 14 C -0.091 4.091 15 C -0.243 4.243 16 C -0.116 4.116 17 C -0.194 4.194 18 C 0.096 3.904 19 C -0.481 4.481 20 H 0.069 0.931 21 C 0.037 3.963 22 N -0.825 5.825 23 Si 0.970 3.030 24 H -0.253 1.253 25 H -0.268 1.268 26 H -0.269 1.269 27 C 0.120 3.880 28 N -0.398 5.398 29 O 0.075 5.925 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.286 0.714 44 H 0.063 0.937 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.373 -9.289 12.628 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.030 4.030 3 N -0.245 5.245 4 C -0.095 4.095 5 C -0.030 4.030 6 H 0.137 0.863 7 C -0.144 4.144 8 C -0.026 4.026 9 N -0.361 5.361 10 C 0.323 3.677 11 O -0.454 6.454 12 C -0.097 4.097 13 C -0.194 4.194 14 C -0.109 4.109 15 C -0.263 4.263 16 C -0.134 4.134 17 C -0.213 4.213 18 C 0.094 3.906 19 C -0.511 4.511 20 H 0.087 0.913 21 C -0.178 4.178 22 N -0.451 5.451 23 Si 0.791 3.209 24 H -0.177 1.177 25 H -0.192 1.192 26 H -0.194 1.194 27 C -0.004 4.004 28 N -0.107 5.107 29 O 0.016 5.984 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.405 -9.197 11.917 24.559 hybrid contribution -0.230 0.729 -0.650 1.004 sum -19.634 -8.468 11.267 24.169 Atomic orbital electron populations 1.20780 0.76295 1.07782 1.06990 1.29899 1.00523 0.79531 0.93026 1.71901 1.00256 1.30171 1.22152 1.25392 0.94971 0.88160 1.00972 1.20622 0.86244 0.99092 0.97040 0.86265 1.22731 0.91500 1.03755 0.96383 1.22349 0.98469 1.03871 0.77933 1.48559 1.09343 1.69763 1.08476 1.21013 0.85734 0.75012 0.85971 1.90668 1.84684 1.53088 1.16971 1.20214 0.89035 1.03333 0.97130 1.19565 1.02058 0.95637 1.02121 1.20733 0.95857 0.97172 0.97139 1.20722 1.04992 0.97388 1.03153 1.20955 0.98948 0.94003 0.99537 1.21315 1.01286 0.98385 1.00358 1.17745 0.91182 0.92285 0.89408 1.19585 1.03171 0.90923 1.37377 0.91310 1.26662 0.97152 1.02170 0.91805 1.69878 1.17714 1.21962 1.35569 0.85374 0.78651 0.77151 0.79680 1.17677 1.19209 1.19385 1.22012 0.81859 0.99655 0.96852 1.74603 0.98400 1.15769 1.21904 1.85279 1.11127 1.36230 1.65736 0.85916 0.86054 0.86620 0.86447 0.89772 0.89304 0.88870 0.88231 0.87050 0.86667 0.86634 0.87574 0.88417 0.90305 0.91873 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 71.24 0.75 0.57 16 2 C 0.19 2.88 8.51 88.38 0.75 3.63 16 3 N -0.51 -11.11 11.55 -303.19 -3.50 -14.62 16 4 C 0.18 4.22 6.88 138.46 0.95 5.17 16 5 C -0.01 -0.21 3.57 -10.15 -0.04 -0.25 16 6 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 7 C -0.11 -1.83 6.41 31.79 0.20 -1.63 16 8 C 0.10 2.02 6.49 86.73 0.56 2.58 16 9 N -0.63 -19.93 3.33 -811.77 -2.70 -22.63 16 10 C 0.53 22.15 7.46 87.66 0.65 22.81 16 11 O -0.58 -30.13 16.29 -3.06 -0.05 -30.18 16 12 C -0.06 -2.30 4.37 29.10 0.13 -2.18 16 13 C -0.19 -9.56 4.43 -19.41 -0.09 -9.64 16 14 C -0.09 -4.24 9.66 22.22 0.21 -4.02 16 15 C -0.24 -11.42 10.05 22.46 0.23 -11.20 16 16 C -0.12 -5.87 10.02 22.22 0.22 -5.65 16 17 C -0.19 -11.00 8.69 22.73 0.20 -10.80 16 18 C 0.10 5.41 5.56 -21.29 -0.12 5.29 16 19 C -0.48 -26.57 8.14 23.46 0.19 -26.37 16 20 H 0.07 3.72 6.67 -2.91 -0.02 3.71 16 21 C 0.04 1.90 5.16 85.26 0.44 2.34 16 22 N -0.82 -44.31 10.96 21.83 0.24 -44.07 16 23 Si 0.97 39.76 29.59 68.60 2.03 41.79 16 24 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 25 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 C 0.12 3.63 6.36 86.85 0.55 4.18 16 28 N -0.40 -9.60 11.87 -60.32 -0.72 -10.32 16 29 O 0.08 1.45 11.31 74.87 0.85 2.30 16 30 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.47 7.97 -2.38 -0.02 1.45 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 3.90 7.08 -2.38 -0.02 3.88 16 38 H 0.11 3.55 8.05 -2.39 -0.02 3.53 16 39 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 41 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 42 H 0.10 5.77 6.20 -2.91 -0.02 5.75 16 43 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 44 H 0.06 1.97 7.85 -2.39 -0.02 1.95 16 45 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 Total: -1.00 -78.53 379.81 2.97 -75.56 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 1.01 Total: 27.34 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 5.80 Total: -25.17 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -6.68 Total: -91.64 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: 0.80 Total: -27.88 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -78.53 2.97 -75.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927330646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.420 kcal (2) G-P(sol) polarization free energy of solvation -78.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds