Wall clock time and date at job start Sat Apr 11 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30523 * 119.70681 * 2 1 4 4 N 1.28268 * 122.99241 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.03015 * 179.97438 * 4 3 2 6 6 C 1.34682 * 121.93847 * 0.02562 * 4 3 2 7 7 O 1.21902 * 120.46801 * 179.97438 * 6 4 3 8 8 C 1.42345 * 119.05943 * 0.02562 * 6 4 3 9 9 C 1.47375 * 121.29608 * 179.97438 * 8 6 4 10 10 O 1.21620 * 119.99458 * 174.03542 * 9 8 6 11 11 N 1.34776 * 120.00322 * 354.03355 * 9 8 6 12 12 C 1.39844 * 119.99673 * 185.39645 * 11 9 8 13 13 C 1.38888 * 120.07300 * 34.41398 * 12 11 9 14 14 C 1.38108 * 119.92563 * 179.74358 * 13 12 11 15 15 C 1.38283 * 120.07273 * 0.52196 * 14 13 12 16 16 C 1.50701 * 119.92886 * 179.70145 * 15 14 13 17 17 C 1.50699 * 109.47382 * 270.02389 * 16 15 14 18 18 H 1.08002 * 119.99651 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00339 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99816 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00408 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47083 * 60.00107 * 21 19 17 23 23 H 1.48501 * 109.47474 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47102 * 300.00354 * 21 19 17 25 25 C 1.38285 * 120.14372 * 359.73225 * 15 14 13 26 26 C 1.38111 * 120.07492 * 0.02562 * 25 15 14 27 27 C 1.39325 * 117.39840 * 0.24616 * 8 6 4 28 28 C 1.50699 * 120.99311 * 179.74835 * 27 8 6 29 29 H 1.09008 * 109.47159 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47570 * 119.99918 * 1 2 3 31 31 H 1.08999 * 109.47348 * 240.00297 * 1 2 3 32 32 H 1.09002 * 109.47348 * 270.01976 * 5 4 3 33 33 H 1.08998 * 109.47327 * 30.02237 * 5 4 3 34 34 H 1.08999 * 109.47235 * 150.02295 * 5 4 3 35 35 H 0.96992 * 120.00203 * 5.40238 * 11 9 8 36 36 H 1.08003 * 120.03989 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.96634 * 180.23181 * 14 13 12 38 38 H 1.08998 * 109.46924 * 30.02809 * 16 15 14 39 39 H 1.09006 * 109.46668 * 150.02609 * 16 15 14 40 40 H 0.97003 * 120.00082 * 179.97438 * 20 19 17 41 41 H 1.08007 * 119.96600 * 179.97438 * 25 15 14 42 42 H 1.07998 * 120.03796 * 179.97438 * 26 25 15 43 43 H 1.08999 * 109.47167 * 84.41637 * 28 27 8 44 44 H 1.09002 * 109.47538 * 204.41563 * 28 27 8 45 45 H 1.09003 * 109.46982 * 324.41681 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1537 1.1337 0.0000 4 7 3.4343 1.2072 -0.0005 5 6 4.0707 2.5268 -0.0010 6 6 4.2111 0.1070 -0.0015 7 8 5.4259 0.2081 -0.0024 8 6 3.5935 -1.1755 -0.0027 9 6 4.3959 -2.4117 -0.0044 10 8 3.8482 -3.4921 0.1040 11 7 5.7364 -2.3448 -0.1263 12 6 6.4874 -3.5188 -0.2415 13 6 5.9670 -4.6143 -0.9183 14 6 6.7134 -5.7704 -1.0349 15 6 7.9733 -5.8418 -0.4692 16 6 8.7822 -7.1073 -0.5926 17 6 8.4814 -8.0116 0.5748 18 1 7.7748 -7.7012 1.3303 19 6 9.1075 -9.2357 0.6779 20 7 9.9676 -9.6139 -0.2423 21 14 8.7341 -10.3569 2.1245 22 1 7.2875 -10.6923 2.1304 23 1 9.5314 -11.6039 2.0031 24 1 9.0871 -9.6656 3.3905 25 6 8.4922 -4.7547 0.2099 26 6 7.7530 -3.5938 0.3257 27 6 2.2008 -1.2164 -0.0080 28 6 1.4631 -2.5304 -0.0152 29 1 -0.3634 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 -0.3634 -0.5138 0.8900 32 1 4.2278 2.8540 -1.0288 33 1 3.4272 3.2407 0.5132 34 1 5.0305 2.4675 0.5121 35 1 6.1803 -1.4824 -0.1340 36 1 4.9812 -4.5609 -1.3563 37 1 6.3109 -6.6214 -1.5643 38 1 8.5232 -7.6150 -1.5217 39 1 9.8440 -6.8608 -0.5970 40 1 10.4084 -10.4749 -0.1696 41 1 9.4763 -4.8138 0.6509 42 1 8.1587 -2.7453 0.8566 43 1 1.3686 -2.8997 1.0059 44 1 0.4708 -2.3877 -0.4432 45 1 2.0162 -3.2543 -0.6137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928404797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:54 Heat of formation + Delta-G solvation = 20.034875 kcal Electronic energy + Delta-G solvation = -28659.214032 eV Core-core repulsion = 24643.170465 eV Total energy + Delta-G solvation = -4016.043567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64921 -40.20008 -38.60540 -38.20317 -36.22238 -34.79991 -32.96138 -32.76496 -31.18815 -30.31004 -30.20993 -28.56425 -27.12549 -26.46791 -24.92945 -23.09276 -22.68006 -22.28948 -21.05832 -20.14209 -19.04703 -18.07324 -17.33033 -17.26128 -16.40853 -16.23715 -16.13270 -15.29225 -14.87409 -14.60477 -14.57390 -14.31861 -14.17462 -14.04150 -13.70253 -13.59169 -13.31411 -13.15025 -13.02446 -12.80320 -12.73268 -12.53318 -12.52559 -12.40972 -11.88842 -11.76344 -11.38897 -11.18868 -10.73523 -10.56471 -10.42906 -10.33257 -10.24282 -9.93289 -9.67232 -9.40976 -9.19990 -8.95426 -8.36439 -8.21611 -7.28583 -5.98163 -4.01801 -0.31198 1.03820 1.65852 1.92073 2.13270 2.51111 3.11665 3.24239 3.36905 3.40115 3.41747 3.44560 3.96165 4.18609 4.26792 4.44249 4.61626 4.66148 4.71197 4.73106 4.90767 5.01395 5.05350 5.09282 5.19956 5.33748 5.35740 5.37169 5.46864 5.54867 5.62607 5.65112 5.94898 6.06990 6.18393 6.21487 6.27910 6.71692 6.87668 6.97941 7.04394 7.23470 7.26416 7.55054 7.56394 7.67931 7.80169 7.92814 7.97889 8.26441 8.39097 9.03471 9.61645 11.11334 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.002277 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.012588 B =12291.850744 C =13135.725750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.056 3.944 3 N -0.206 5.206 4 N -0.341 5.341 5 C 0.079 3.921 6 C 0.496 3.504 7 O -0.527 6.527 8 C -0.231 4.231 9 C 0.571 3.429 10 O -0.516 6.516 11 N -0.652 5.652 12 C 0.105 3.895 13 C -0.117 4.117 14 C -0.108 4.108 15 C -0.043 4.043 16 C 0.049 3.951 17 C -0.510 4.510 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.108 4.108 26 C -0.140 4.140 27 C 0.048 3.952 28 C -0.133 4.133 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.419 0.581 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.262 0.738 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.845 25.964 -1.026 32.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 N -0.031 5.031 4 N -0.160 5.160 5 C -0.061 4.061 6 C 0.296 3.704 7 O -0.406 6.406 8 C -0.246 4.246 9 C 0.358 3.642 10 O -0.393 6.393 11 N -0.305 5.305 12 C 0.013 3.987 13 C -0.137 4.137 14 C -0.127 4.127 15 C -0.044 4.044 16 C 0.012 3.988 17 C -0.548 4.548 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.126 4.126 26 C -0.160 4.160 27 C 0.040 3.960 28 C -0.189 4.189 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.264 0.736 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.444 26.165 -1.014 32.614 hybrid contribution 0.390 -0.836 0.869 1.267 sum -19.054 25.329 -0.144 31.696 Atomic orbital electron populations 1.20609 0.85532 1.04617 1.03859 1.21812 0.98301 0.86561 1.04729 1.70691 0.95012 1.28959 1.08487 1.46516 1.01993 1.10038 1.57472 1.22241 0.99442 0.79635 1.04750 1.17861 0.88073 0.84905 0.79610 1.90701 1.12213 1.85214 1.52464 1.21437 0.94359 0.93693 1.15064 1.17301 0.82291 0.87139 0.77422 1.90789 1.70947 1.28522 1.49066 1.43835 1.06060 1.10175 1.70384 1.17555 0.92510 0.87411 1.01231 1.20954 1.00080 0.93130 0.99563 1.20971 0.94318 0.96808 1.00587 1.20708 0.94509 0.96322 0.92812 1.18341 0.94410 0.88228 0.97824 1.21048 1.24799 1.01183 1.07780 0.92502 1.25007 0.95101 0.97894 0.96368 1.69952 1.27955 1.21445 1.34112 0.86600 0.78417 0.79839 0.82854 1.20152 1.21278 1.20205 1.20887 1.00032 0.92098 0.99622 1.20776 0.94568 0.98997 1.01681 1.21703 0.92347 0.97689 0.84233 1.21303 0.99825 0.92576 1.05174 0.89841 0.89493 0.89490 0.89781 0.88465 0.87875 0.73621 0.86035 0.86077 0.95311 0.95327 0.92853 0.85983 0.86791 0.88381 0.90422 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.29 8.95 36.00 0.32 0.03 16 2 C 0.06 0.41 6.87 -82.48 -0.57 -0.16 16 3 N -0.21 -1.68 10.74 33.66 0.36 -1.32 16 4 N -0.34 -3.12 3.62 -69.82 -0.25 -3.37 16 5 C 0.08 0.45 10.58 59.85 0.63 1.08 16 6 C 0.50 5.97 7.50 -14.72 -0.11 5.86 16 7 O -0.53 -7.24 13.42 5.01 0.07 -7.17 16 8 C -0.23 -2.88 5.95 -104.20 -0.62 -3.50 16 9 C 0.57 8.94 7.44 -12.54 -0.09 8.85 16 10 O -0.52 -8.91 11.37 5.26 0.06 -8.85 16 11 N -0.65 -10.72 5.26 -10.85 -0.06 -10.77 16 12 C 0.11 1.97 6.26 -83.72 -0.52 1.45 16 13 C -0.12 -2.30 8.65 -39.39 -0.34 -2.64 16 14 C -0.11 -2.30 9.69 -39.61 -0.38 -2.68 16 15 C -0.04 -0.98 5.07 -104.59 -0.53 -1.51 16 16 C 0.05 1.29 5.10 -29.03 -0.15 1.15 16 17 C -0.51 -14.72 9.09 -34.44 -0.31 -15.03 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 21 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 C -0.11 -2.23 9.69 -39.61 -0.38 -2.61 16 26 C -0.14 -2.59 9.97 -39.39 -0.39 -2.99 16 27 C 0.05 0.45 5.99 -103.54 -0.62 -0.17 16 28 C -0.13 -1.06 8.60 36.00 0.31 -0.75 16 29 H 0.08 0.22 8.11 -51.92 -0.42 -0.20 16 30 H 0.09 0.18 7.56 -51.93 -0.39 -0.21 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.61 7.36 -51.93 -0.38 0.22 16 35 H 0.42 6.47 5.56 -40.82 -0.23 6.25 16 36 H 0.12 2.27 6.50 -52.48 -0.34 1.92 16 37 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 38 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 42 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.36 6.60 -51.93 -0.34 0.01 16 45 H 0.11 1.17 5.97 -51.93 -0.31 0.86 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -34.82 376.03 -8.05 -42.88 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.76 Total: 4.10 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -3.86 Total: -12.06 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.79 Total: -41.68 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.13 Total: -16.02 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.82 -8.05 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928404797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.911 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds