Wall clock time and date at job start Sat Apr 11 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34258 * 126.52308 * 2 1 4 4 C 1.34057 * 108.22555 * 180.26730 * 3 2 1 5 5 N 1.29939 * 109.24110 * 359.73867 * 4 3 2 6 6 C 1.36064 * 108.47580 * 0.02562 * 5 4 3 7 7 C 1.47423 * 126.44766 * 180.02562 * 6 5 4 8 8 O 1.21607 * 120.00281 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99933 * 0.02562 * 7 6 5 10 10 C 1.46496 * 120.00398 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47416 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.43175 * 65.09155 * 11 10 9 13 13 C 1.50811 * 109.43549 * 184.99888 * 11 10 9 14 14 C 1.38835 * 117.80735 * 288.74240 * 13 11 10 15 15 C 1.37957 * 120.50430 * 179.38218 * 14 13 11 16 16 C 1.38266 * 119.71671 * 359.81476 * 15 14 13 17 17 C 1.37907 * 119.82719 * 0.26341 * 16 15 14 18 18 C 1.37673 * 122.34548 * 108.61737 * 13 11 10 19 19 C 1.50590 * 122.85162 * 1.18663 * 18 13 11 20 20 C 1.52792 * 110.91688 * 340.08395 * 19 18 13 21 21 N 1.46673 * 109.40259 * 305.20020 * 11 10 9 22 22 C 1.36939 * 121.33258 * 104.35824 * 21 11 10 23 23 H 1.08000 * 119.99723 * 333.80476 * 22 21 11 24 24 C 1.38808 * 120.00334 * 153.80207 * 22 21 11 25 25 N 1.31618 * 119.99835 * 340.98884 * 24 22 21 26 26 Si 1.86797 * 120.00210 * 160.98795 * 24 22 21 27 27 H 1.48506 * 109.47001 * 94.42876 * 26 24 22 28 28 H 1.48501 * 109.47029 * 214.42724 * 26 24 22 29 29 H 1.48503 * 109.47092 * 334.42710 * 26 24 22 30 30 H 1.09003 * 109.46570 * 270.17702 * 1 2 3 31 31 H 1.09002 * 109.47416 * 30.17634 * 1 2 3 32 32 H 1.08993 * 109.47136 * 150.18333 * 1 2 3 33 33 H 1.07997 * 125.37912 * 179.76920 * 4 3 2 34 34 H 0.97009 * 119.99688 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.46788 * 59.99998 * 10 9 7 36 36 H 1.09002 * 109.47150 * 300.00553 * 10 9 7 37 37 H 1.07996 * 119.75001 * 359.35552 * 14 13 11 38 38 H 1.08001 * 120.14228 * 179.83814 * 15 14 13 39 39 H 1.08003 * 120.08630 * 180.23853 * 16 15 14 40 40 H 1.07995 * 119.70572 * 180.02562 * 17 16 15 41 41 H 1.08996 * 109.32144 * 219.61552 * 19 18 13 42 42 H 1.08998 * 108.98416 * 100.33370 * 19 18 13 43 43 H 1.09002 * 109.77328 * 287.75061 * 20 19 18 44 44 H 1.08998 * 109.82263 * 166.97533 * 20 19 18 45 45 H 0.97001 * 120.00212 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 -0.0059 5 7 3.6002 -0.6412 -0.0040 6 6 2.3170 -1.0935 0.0027 7 6 1.8853 -2.5032 0.0075 8 8 0.7003 -2.7762 0.0130 9 7 2.8041 -3.4893 0.0057 10 6 2.3752 -4.8901 0.0099 11 6 3.6051 -5.8001 0.0075 12 1 4.1573 -5.6659 0.9377 13 6 3.1654 -7.2377 -0.1122 14 6 2.5433 -7.8182 0.9849 15 6 2.1073 -9.1259 0.9319 16 6 2.2881 -9.8624 -0.2243 17 6 2.9074 -9.2873 -1.3141 18 6 3.3588 -7.9741 -1.2593 19 6 4.0458 -7.4202 -2.4795 20 6 4.0375 -5.8923 -2.4638 21 7 4.4673 -5.4510 -1.1266 22 6 5.6260 -4.7431 -0.9488 23 1 5.7295 -4.0806 -0.1022 24 6 6.6674 -4.8771 -1.8566 25 7 6.7147 -5.9230 -2.6543 26 14 8.0019 -3.5731 -1.9464 27 1 9.1480 -3.9782 -1.0933 28 1 8.4581 -3.4277 -3.3520 29 1 7.4604 -2.2768 -1.4650 30 1 -0.3632 0.0032 1.0277 31 1 -0.3634 0.8884 -0.5166 32 1 -0.3633 -0.8916 -0.5109 33 1 4.4489 1.2978 -0.0110 34 1 3.7494 -3.2715 0.0017 35 1 1.7741 -5.0886 -0.8775 36 1 1.7808 -5.0855 0.9025 37 1 2.4000 -7.2417 1.8868 38 1 1.6264 -9.5725 1.7896 39 1 1.9456 -10.8855 -0.2737 40 1 3.0472 -9.8642 -2.2163 41 1 3.5318 -7.7723 -3.3738 42 1 5.0771 -7.7728 -2.4965 43 1 3.0308 -5.5270 -2.6668 44 1 4.7269 -5.5112 -3.2172 45 1 7.4426 -6.0169 -3.2884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948894282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:59 Heat of formation + Delta-G solvation = 35.553164 kcal Electronic energy + Delta-G solvation = -29990.891557 eV Core-core repulsion = 25975.520913 eV Total energy + Delta-G solvation = -4015.370644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.37156 -39.59861 -38.83448 -36.28228 -34.77468 -34.13807 -32.35712 -32.28905 -31.93033 -29.85517 -28.74647 -27.70356 -26.62601 -24.51131 -23.36263 -22.59482 -22.09206 -21.66909 -21.08135 -20.11835 -18.69784 -17.97144 -16.86168 -16.74396 -16.07092 -15.78931 -15.46435 -15.35678 -14.72828 -14.54364 -14.47810 -14.14911 -13.93619 -13.72762 -13.40611 -13.16448 -13.08982 -12.66740 -12.54187 -12.45535 -12.34528 -12.20786 -11.68315 -11.29876 -11.21483 -11.09065 -11.04535 -10.78687 -10.69485 -10.64392 -10.41792 -10.07551 -9.84902 -9.76293 -9.50471 -8.93172 -8.56124 -8.44953 -8.23660 -7.90179 -6.80940 -5.88435 -3.30894 1.17153 1.88586 1.96046 2.18672 2.58847 3.34126 3.42280 3.46281 3.54360 3.62884 4.16658 4.31418 4.41732 4.66229 5.02244 5.16968 5.26557 5.27594 5.38615 5.39576 5.43910 5.45156 5.47278 5.59560 5.82577 5.83680 5.91014 5.98488 5.99170 6.06468 6.17340 6.26194 6.38944 6.45771 6.56748 6.61332 6.72993 6.78327 6.93291 6.97868 7.04119 7.36246 7.39653 7.50797 7.56643 7.63515 7.73338 8.09659 8.31306 8.61140 9.08768 9.70976 10.28697 11.18965 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.004523 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.902345 B = 6189.567388 C = 8659.803197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.031 3.969 3 O -0.205 6.205 4 C 0.168 3.832 5 N -0.451 5.451 6 C -0.068 4.068 7 C 0.594 3.406 8 O -0.554 6.554 9 N -0.685 5.685 10 C 0.113 3.887 11 C 0.193 3.807 12 H 0.077 0.923 13 C -0.079 4.079 14 C -0.118 4.118 15 C -0.139 4.139 16 C -0.128 4.128 17 C -0.134 4.134 18 C -0.038 4.038 19 C -0.096 4.096 20 C 0.164 3.836 21 N -0.579 5.579 22 C -0.254 4.254 23 H 0.069 0.931 24 C 0.010 3.990 25 N -0.893 5.893 26 Si 0.900 3.100 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.274 1.274 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.253 0.747 34 H 0.420 0.580 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.048 0.952 42 H 0.101 0.899 43 H 0.006 0.994 44 H 0.096 0.904 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 5.836 4.678 11.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.025 4.025 3 O -0.092 6.092 4 C -0.060 4.060 5 N -0.180 5.180 6 C -0.188 4.188 7 C 0.379 3.621 8 O -0.434 6.434 9 N -0.335 5.335 10 C -0.013 4.013 11 C 0.084 3.916 12 H 0.095 0.905 13 C -0.081 4.081 14 C -0.137 4.137 15 C -0.158 4.158 16 C -0.146 4.146 17 C -0.153 4.153 18 C -0.039 4.039 19 C -0.135 4.135 20 C 0.039 3.961 21 N -0.299 5.299 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.189 4.189 25 N -0.536 5.536 26 Si 0.729 3.271 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.199 1.199 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.269 0.731 34 H 0.259 0.741 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.024 0.976 44 H 0.114 0.886 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.328 5.234 4.535 11.617 hybrid contribution 0.983 0.949 -0.092 1.369 sum -8.345 6.182 4.443 11.296 Atomic orbital electron populations 1.20546 0.82765 1.05214 1.04402 1.23697 0.95103 0.83456 1.00281 1.84348 1.18673 1.36350 1.69780 1.28023 0.85100 0.91383 1.01529 1.70855 1.21742 1.09931 1.15453 1.21629 0.88692 0.95872 1.12574 1.16726 0.85571 0.82654 0.77169 1.90726 1.16422 1.83406 1.52816 1.45778 1.11113 1.05522 1.71078 1.21968 0.98133 0.80153 1.01051 1.19604 0.90633 0.87599 0.93778 0.90466 1.20077 0.97929 0.96848 0.93258 1.21095 0.99140 0.95291 0.98174 1.20874 1.02196 0.94819 0.97867 1.20911 1.00618 0.99218 0.93867 1.21192 1.00272 0.95273 0.98522 1.19864 0.95093 0.92973 0.95935 1.20994 1.01009 0.99601 0.91880 1.20803 0.95806 0.90610 0.88863 1.44134 1.22448 1.63266 1.00058 1.19048 0.91169 1.16924 1.11188 0.91323 1.24954 0.96923 0.96799 1.00268 1.69978 1.32473 1.26185 1.24971 0.86316 0.81696 0.82066 0.76981 1.21586 1.21693 1.19946 0.89297 0.90455 0.86956 0.73086 0.74089 0.91902 0.92201 0.86760 0.86971 0.87078 0.86910 0.93328 0.88098 0.97619 0.88634 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 9.88 36.01 0.36 -0.42 16 2 C 0.03 0.43 7.44 -35.08 -0.26 0.16 16 3 O -0.20 -2.51 10.73 6.49 0.07 -2.44 16 4 C 0.17 2.00 13.19 51.96 0.69 2.68 16 5 N -0.45 -7.31 11.06 -11.48 -0.13 -7.44 16 6 C -0.07 -1.13 6.99 -83.02 -0.58 -1.71 16 7 C 0.59 11.01 7.81 -12.52 -0.10 10.92 16 8 O -0.55 -10.74 14.81 5.27 0.08 -10.66 16 9 N -0.68 -13.03 5.38 -61.39 -0.33 -13.36 16 10 C 0.11 2.11 5.01 -4.05 -0.02 2.09 16 11 C 0.19 3.86 2.50 -68.94 -0.17 3.69 16 12 H 0.08 1.56 7.98 -51.93 -0.41 1.15 16 13 C -0.08 -1.52 5.16 -104.55 -0.54 -2.06 16 14 C -0.12 -1.97 9.35 -39.46 -0.37 -2.33 16 15 C -0.14 -2.11 10.05 -39.67 -0.40 -2.51 16 16 C -0.13 -1.96 10.04 -39.69 -0.40 -2.35 16 17 C -0.13 -2.30 9.59 -39.43 -0.38 -2.68 16 18 C -0.04 -0.75 5.76 -104.61 -0.60 -1.36 16 19 C -0.10 -2.02 5.77 -28.04 -0.16 -2.19 16 20 C 0.16 3.74 5.46 -3.75 -0.02 3.72 16 21 N -0.58 -13.28 2.30 -166.33 -0.38 -13.66 16 22 C -0.25 -6.38 8.71 -15.06 -0.13 -6.51 16 23 H 0.07 1.70 7.32 -52.49 -0.38 1.31 16 24 C 0.01 0.26 4.93 -17.43 -0.09 0.17 16 25 N -0.89 -23.82 10.16 55.49 0.56 -23.25 16 26 Si 0.90 20.71 29.59 -169.99 -5.03 15.68 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.11 1.37 6.48 -51.93 -0.34 1.03 16 33 H 0.25 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.42 8.47 6.42 -40.82 -0.26 8.21 16 35 H 0.06 1.26 7.55 -51.93 -0.39 0.87 16 36 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 37 H 0.11 1.67 8.05 -52.49 -0.42 1.24 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 40 H 0.11 1.73 8.05 -52.49 -0.42 1.31 16 41 H 0.05 0.92 8.11 -51.93 -0.42 0.49 16 42 H 0.10 2.41 7.16 -51.93 -0.37 2.03 16 43 H 0.01 0.13 7.48 -51.93 -0.39 -0.26 16 44 H 0.10 2.42 5.91 -51.93 -0.31 2.11 16 45 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -30.06 370.32 -8.55 -38.60 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.79 Total: 11.62 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.18 Total: -0.67 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.28 Total: -57.72 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.15 Total: -13.11 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.06 -8.55 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948894282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.158 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds