Wall clock time and date at job start Sat Apr 11 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34258 * 126.52308 * 2 1 4 4 C 1.34057 * 108.22555 * 180.26730 * 3 2 1 5 5 N 1.29939 * 109.24110 * 359.73867 * 4 3 2 6 6 C 1.36064 * 108.47580 * 0.02562 * 5 4 3 7 7 C 1.47423 * 126.44766 * 180.02562 * 6 5 4 8 8 O 1.21607 * 120.00281 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99933 * 0.02562 * 7 6 5 10 10 C 1.46496 * 120.00398 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47416 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.43175 * 65.09155 * 11 10 9 13 13 C 1.50811 * 109.43549 * 184.99888 * 11 10 9 14 14 C 1.38835 * 117.80735 * 288.74240 * 13 11 10 15 15 C 1.37957 * 120.50430 * 179.38218 * 14 13 11 16 16 C 1.38266 * 119.71671 * 359.81476 * 15 14 13 17 17 C 1.37907 * 119.82719 * 0.26341 * 16 15 14 18 18 C 1.37673 * 122.34548 * 108.61737 * 13 11 10 19 19 C 1.50590 * 122.85162 * 1.18663 * 18 13 11 20 20 C 1.52792 * 110.91688 * 340.08395 * 19 18 13 21 21 N 1.46673 * 109.40259 * 305.20020 * 11 10 9 22 22 C 1.36939 * 121.33258 * 104.35824 * 21 11 10 23 23 H 1.08000 * 119.99723 * 333.80476 * 22 21 11 24 24 C 1.38808 * 120.00334 * 153.80207 * 22 21 11 25 25 N 1.31618 * 119.99835 * 340.98884 * 24 22 21 26 26 Si 1.86797 * 120.00210 * 160.98795 * 24 22 21 27 27 H 1.48506 * 109.47001 * 94.42876 * 26 24 22 28 28 H 1.48501 * 109.47029 * 214.42724 * 26 24 22 29 29 H 1.48503 * 109.47092 * 334.42710 * 26 24 22 30 30 H 1.09003 * 109.46570 * 270.17702 * 1 2 3 31 31 H 1.09002 * 109.47416 * 30.17634 * 1 2 3 32 32 H 1.08993 * 109.47136 * 150.18333 * 1 2 3 33 33 H 1.07997 * 125.37912 * 179.76920 * 4 3 2 34 34 H 0.97009 * 119.99688 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.46788 * 59.99998 * 10 9 7 36 36 H 1.09002 * 109.47150 * 300.00553 * 10 9 7 37 37 H 1.07996 * 119.75001 * 359.35552 * 14 13 11 38 38 H 1.08001 * 120.14228 * 179.83814 * 15 14 13 39 39 H 1.08003 * 120.08630 * 180.23853 * 16 15 14 40 40 H 1.07995 * 119.70572 * 180.02562 * 17 16 15 41 41 H 1.08996 * 109.32144 * 219.61552 * 19 18 13 42 42 H 1.08998 * 108.98416 * 100.33370 * 19 18 13 43 43 H 1.09002 * 109.77328 * 287.75061 * 20 19 18 44 44 H 1.08998 * 109.82263 * 166.97533 * 20 19 18 45 45 H 0.97001 * 120.00212 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 -0.0059 5 7 3.6002 -0.6412 -0.0040 6 6 2.3170 -1.0935 0.0027 7 6 1.8853 -2.5032 0.0075 8 8 0.7003 -2.7762 0.0130 9 7 2.8041 -3.4893 0.0057 10 6 2.3752 -4.8901 0.0099 11 6 3.6051 -5.8001 0.0075 12 1 4.1573 -5.6659 0.9377 13 6 3.1654 -7.2377 -0.1122 14 6 2.5433 -7.8182 0.9849 15 6 2.1073 -9.1259 0.9319 16 6 2.2881 -9.8624 -0.2243 17 6 2.9074 -9.2873 -1.3141 18 6 3.3588 -7.9741 -1.2593 19 6 4.0458 -7.4202 -2.4795 20 6 4.0375 -5.8923 -2.4638 21 7 4.4673 -5.4510 -1.1266 22 6 5.6260 -4.7431 -0.9488 23 1 5.7295 -4.0806 -0.1022 24 6 6.6674 -4.8771 -1.8566 25 7 6.7147 -5.9230 -2.6543 26 14 8.0019 -3.5731 -1.9464 27 1 9.1480 -3.9782 -1.0933 28 1 8.4581 -3.4277 -3.3520 29 1 7.4604 -2.2768 -1.4650 30 1 -0.3632 0.0032 1.0277 31 1 -0.3634 0.8884 -0.5166 32 1 -0.3633 -0.8916 -0.5109 33 1 4.4489 1.2978 -0.0110 34 1 3.7494 -3.2715 0.0017 35 1 1.7741 -5.0886 -0.8775 36 1 1.7808 -5.0855 0.9025 37 1 2.4000 -7.2417 1.8868 38 1 1.6264 -9.5725 1.7896 39 1 1.9456 -10.8855 -0.2737 40 1 3.0472 -9.8642 -2.2163 41 1 3.5318 -7.7723 -3.3738 42 1 5.0771 -7.7728 -2.4965 43 1 3.0308 -5.5270 -2.6668 44 1 4.7269 -5.5112 -3.2172 45 1 7.4426 -6.0169 -3.2884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948894282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:58 Heat of formation + Delta-G solvation = 15.943636 kcal Electronic energy + Delta-G solvation = -29991.741890 eV Core-core repulsion = 25975.520913 eV Total energy + Delta-G solvation = -4016.220976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.41276 -41.06322 -40.24077 -37.84436 -35.92921 -35.66517 -34.02700 -33.42281 -33.34067 -31.51426 -30.17890 -29.04394 -27.96008 -26.08688 -24.71925 -24.12684 -23.55284 -22.87064 -22.42561 -21.43964 -20.25374 -19.30480 -18.42787 -17.90470 -17.45578 -17.12041 -17.00914 -16.76337 -16.20796 -15.95761 -15.73977 -15.59655 -15.34983 -15.19957 -14.97790 -14.40591 -14.21391 -13.95108 -13.91870 -13.86538 -13.74533 -13.34231 -13.31390 -12.92617 -12.74846 -12.72550 -12.54927 -12.39526 -12.23335 -12.10263 -11.79335 -11.77604 -11.55848 -11.26051 -11.11669 -10.48243 -10.16406 -9.80687 -9.56075 -9.30854 -8.68844 -7.84544 -5.27997 0.07104 0.57391 0.62628 1.08726 1.47883 1.51533 1.60525 1.61275 2.20903 2.29751 2.52504 2.97804 3.16964 3.31800 3.55319 3.65593 3.83255 3.97332 4.07319 4.15933 4.25357 4.31094 4.35271 4.39332 4.44847 4.58241 4.60124 4.62169 4.76973 4.78736 4.89542 4.96672 4.97728 5.08509 5.11583 5.18970 5.23386 5.26025 5.46239 5.53805 5.62356 5.69349 5.70983 5.84367 6.00378 6.26416 6.38230 6.39273 6.67844 7.11058 7.17485 7.81199 8.37871 9.20839 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.004523 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.902345 B = 6189.567388 C = 8659.803197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.046 3.954 3 O -0.196 6.196 4 C 0.192 3.808 5 N -0.500 5.500 6 C -0.109 4.109 7 C 0.590 3.410 8 O -0.569 6.569 9 N -0.692 5.692 10 C 0.127 3.873 11 C 0.197 3.803 12 H 0.071 0.929 13 C -0.102 4.102 14 C -0.123 4.123 15 C -0.131 4.131 16 C -0.122 4.122 17 C -0.141 4.141 18 C -0.070 4.070 19 C -0.084 4.084 20 C 0.170 3.830 21 N -0.588 5.588 22 C -0.254 4.254 23 H 0.069 0.931 24 C -0.038 4.038 25 N -0.916 5.916 26 Si 0.956 3.044 27 H -0.291 1.291 28 H -0.298 1.298 29 H -0.268 1.268 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.302 0.698 34 H 0.414 0.586 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.126 0.874 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.004 0.996 44 H 0.065 0.935 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 6.317 6.269 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.011 4.011 3 O -0.083 6.083 4 C -0.037 4.037 5 N -0.229 5.229 6 C -0.227 4.227 7 C 0.377 3.623 8 O -0.451 6.451 9 N -0.341 5.341 10 C 0.001 3.999 11 C 0.089 3.911 12 H 0.089 0.911 13 C -0.104 4.104 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.140 4.140 17 C -0.159 4.159 18 C -0.070 4.070 19 C -0.122 4.122 20 C 0.045 3.955 21 N -0.309 5.309 22 C -0.383 4.383 23 H 0.086 0.914 24 C -0.235 4.235 25 N -0.561 5.561 26 Si 0.785 3.215 27 H -0.218 1.218 28 H -0.224 1.224 29 H -0.193 1.193 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.316 0.684 34 H 0.251 0.749 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.151 0.849 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.144 0.856 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.022 0.978 44 H 0.084 0.916 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.736 5.708 6.146 13.624 hybrid contribution 1.336 0.835 -0.532 1.663 sum -9.400 6.543 5.613 12.755 Atomic orbital electron populations 1.20657 0.80732 1.05767 1.05623 1.24137 0.96207 0.82925 0.97835 1.84400 1.18820 1.35537 1.69546 1.29082 0.85907 0.90700 0.97989 1.70796 1.21950 1.12172 1.17956 1.21459 0.89861 0.95390 1.16018 1.17046 0.85268 0.83571 0.76400 1.90696 1.16797 1.83995 1.53569 1.45821 1.10857 1.05792 1.71676 1.21770 0.97276 0.80057 1.00777 1.19622 0.90345 0.88960 0.92193 0.91114 1.20070 0.99701 0.96200 0.94431 1.21323 0.98613 0.96391 0.97812 1.21327 1.00658 0.93905 0.98941 1.21338 0.98955 1.00744 0.92918 1.21384 1.00158 0.94292 1.00040 1.19846 0.97027 0.94607 0.95541 1.20724 0.99578 0.98058 0.93862 1.20614 0.94577 0.92017 0.88306 1.44166 1.22282 1.63495 1.00945 1.19254 0.91561 1.16748 1.10785 0.91366 1.25578 0.98891 0.98367 1.00663 1.70127 1.32883 1.27419 1.25632 0.85430 0.79454 0.80377 0.76205 1.21790 1.22433 1.19267 0.87590 0.87432 0.88741 0.68366 0.74878 0.93704 0.90693 0.84920 0.83279 0.83503 0.85600 0.91977 0.91455 0.97776 0.91644 0.94293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 9.88 71.24 0.70 -0.69 16 2 C 0.05 1.21 7.44 25.19 0.19 1.40 16 3 O -0.20 -4.33 10.73 0.30 0.00 -4.33 16 4 C 0.19 4.11 13.19 130.52 1.72 5.83 16 5 N -0.50 -15.96 11.06 -305.14 -3.37 -19.34 16 6 C -0.11 -3.63 6.99 40.41 0.28 -3.34 16 7 C 0.59 22.41 7.81 86.66 0.68 23.09 16 8 O -0.57 -22.44 14.81 -4.05 -0.06 -22.50 16 9 N -0.69 -27.22 5.38 -466.38 -2.51 -29.73 16 10 C 0.13 4.87 5.01 86.38 0.43 5.30 16 11 C 0.20 8.08 2.50 44.25 0.11 8.19 16 12 H 0.07 2.95 7.98 -2.38 -0.02 2.93 16 13 C -0.10 -3.92 5.16 -19.82 -0.10 -4.03 16 14 C -0.12 -3.85 9.35 22.35 0.21 -3.64 16 15 C -0.13 -3.47 10.05 22.21 0.22 -3.24 16 16 C -0.12 -3.30 10.04 22.20 0.22 -3.08 16 17 C -0.14 -4.61 9.59 22.37 0.21 -4.40 16 18 C -0.07 -2.77 5.76 -19.86 -0.11 -2.88 16 19 C -0.08 -3.67 5.77 29.74 0.17 -3.50 16 20 C 0.17 8.18 5.46 86.17 0.47 8.65 16 21 N -0.59 -28.15 2.30 -680.14 -1.56 -29.71 16 22 C -0.25 -13.19 8.71 84.03 0.73 -12.45 16 23 H 0.07 3.48 7.32 -2.91 -0.02 3.46 16 24 C -0.04 -2.04 4.93 84.86 0.42 -1.63 16 25 N -0.92 -51.09 10.16 21.65 0.22 -50.87 16 26 Si 0.96 43.82 29.59 68.60 2.03 45.85 16 27 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 28 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 29 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 2.24 6.48 -2.39 -0.02 2.23 16 33 H 0.30 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.41 17.37 6.42 -92.70 -0.59 16.77 16 35 H 0.04 1.87 7.55 -2.39 -0.02 1.85 16 36 H 0.07 2.61 8.04 -2.39 -0.02 2.59 16 37 H 0.13 3.57 8.05 -2.91 -0.02 3.54 16 38 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 39 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 40 H 0.13 3.68 8.05 -2.91 -0.02 3.66 16 41 H 0.06 2.44 8.11 -2.39 -0.02 2.42 16 42 H 0.07 3.39 7.16 -2.39 -0.02 3.38 16 43 H 0.00 0.20 7.48 -2.39 -0.02 0.18 16 44 H 0.07 3.53 5.91 -2.39 -0.01 3.51 16 45 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 Total: -1.00 -68.66 370.32 1.75 -66.91 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.44 Total: 34.13 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 6.56 Total: 9.59 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -7.23 Total: -129.65 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.06 Total: -26.83 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -68.66 1.75 -66.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948894282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.854 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds