Wall clock time and date at job start Sat Apr 11 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33693 * 126.27417 * 2 1 4 4 C 1.30616 * 108.99578 * 180.02562 * 3 2 1 5 5 O 1.33665 * 109.15280 * 359.74351 * 4 3 2 6 6 C 1.35345 * 107.68446 * 0.40306 * 5 4 3 7 7 C 1.46717 * 126.64118 * 179.87340 * 6 5 4 8 8 O 1.21686 * 120.00287 * 179.68740 * 7 6 5 9 9 N 1.34778 * 120.00160 * 359.68521 * 7 6 5 10 10 C 1.46501 * 120.00026 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46848 * 185.54813 * 10 9 7 12 12 H 1.09002 * 109.40511 * 299.98951 * 11 10 9 13 13 C 1.50813 * 109.42922 * 180.08752 * 11 10 9 14 14 C 1.38839 * 117.80346 * 49.11359 * 13 11 10 15 15 C 1.37957 * 120.50788 * 178.84828 * 14 13 11 16 16 C 1.38264 * 119.71224 * 0.03276 * 15 14 13 17 17 C 1.37902 * 119.83049 * 0.23327 * 16 15 14 18 18 C 1.37670 * 122.34480 * 228.40238 * 13 11 10 19 19 C 1.50599 * 122.86031 * 1.45530 * 18 13 11 20 20 C 1.52788 * 110.85230 * 339.82352 * 19 18 13 21 21 N 1.46683 * 109.43609 * 59.88372 * 11 10 9 22 22 C 1.36941 * 121.33500 * 344.72551 * 21 11 10 23 23 H 1.07997 * 119.99834 * 35.76377 * 22 21 11 24 24 C 1.38811 * 119.99749 * 215.75907 * 22 21 11 25 25 N 1.31617 * 120.00354 * 11.79743 * 24 22 21 26 26 Si 1.86805 * 119.99710 * 191.79848 * 24 22 21 27 27 H 1.48500 * 109.47062 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.46849 * 120.00268 * 26 24 22 29 29 H 1.48498 * 109.46689 * 240.00045 * 26 24 22 30 30 H 1.08997 * 109.47769 * 269.98526 * 1 2 3 31 31 H 1.09001 * 109.47114 * 29.98417 * 1 2 3 32 32 H 1.09007 * 109.47222 * 149.98176 * 1 2 3 33 33 H 1.08005 * 125.42062 * 179.97438 * 4 3 2 34 34 H 0.97004 * 119.99960 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.46968 * 65.55553 * 10 9 7 36 36 H 1.08994 * 109.47624 * 305.54930 * 10 9 7 37 37 H 1.08002 * 119.74119 * 358.84091 * 14 13 11 38 38 H 1.07998 * 120.13938 * 180.02562 * 15 14 13 39 39 H 1.08007 * 120.08181 * 180.25285 * 16 15 14 40 40 H 1.07999 * 119.70924 * 179.97438 * 17 16 15 41 41 H 1.08998 * 109.20169 * 219.47312 * 19 18 13 42 42 H 1.08995 * 109.16516 * 100.15626 * 19 18 13 43 43 H 1.09002 * 109.77795 * 287.89481 * 20 19 18 44 44 H 1.09004 * 109.82158 * 167.12258 * 20 19 18 45 45 H 0.96996 * 120.00425 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0006 5 8 3.5889 -0.6460 0.0047 6 6 2.3136 -1.0992 -0.0004 7 6 1.8826 -2.5016 0.0000 8 8 0.6966 -2.7737 0.0008 9 7 2.8004 -3.4887 -0.0005 10 6 2.3700 -4.8890 0.0005 11 6 3.5928 -5.7982 0.1391 12 1 4.2690 -5.6260 -0.6983 13 6 3.1490 -7.2395 0.1378 14 6 2.2795 -7.6485 -0.8643 15 6 1.8566 -8.9599 -0.9325 16 6 2.3021 -9.8732 0.0052 17 6 3.1614 -9.4669 1.0043 18 6 3.5865 -8.1457 1.0774 19 6 4.5163 -7.7725 2.2018 20 6 5.2668 -6.4810 1.8809 21 7 4.2858 -5.4959 1.3961 22 6 4.0266 -4.3463 2.0936 23 1 3.0239 -3.9460 2.1213 24 6 5.0526 -3.6956 2.7650 25 7 6.3040 -4.0407 2.5478 26 14 4.6571 -2.3300 3.9768 27 1 3.1864 -2.1348 4.0398 28 1 5.1661 -2.6994 5.3221 29 1 5.3046 -1.0701 3.5312 30 1 -0.3634 -0.0003 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3634 -0.8899 -0.5141 33 1 4.4043 1.3444 -0.0011 34 1 3.7459 -3.2718 -0.0007 35 1 1.8559 -5.1118 -0.9345 36 1 1.6930 -5.0606 0.8373 37 1 1.9315 -6.9345 -1.5960 38 1 1.1805 -9.2717 -1.7148 39 1 1.9780 -10.9023 -0.0450 40 1 3.5078 -10.1818 1.7359 41 1 5.2359 -8.5770 2.3538 42 1 3.9365 -7.6331 3.1141 43 1 6.0123 -6.6698 1.1084 44 1 5.7547 -6.1039 2.7798 45 1 7.0210 -3.5858 3.0167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948906466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:07 Heat of formation + Delta-G solvation = 23.730354 kcal Electronic energy + Delta-G solvation = -30388.774742 eV Core-core repulsion = 26372.891423 eV Total energy + Delta-G solvation = -4015.883319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.46395 -41.15941 -40.27841 -37.92610 -36.49353 -35.68499 -34.23292 -33.55213 -32.60352 -31.50770 -30.31181 -29.12149 -27.93384 -26.52938 -24.71037 -23.98468 -23.64013 -22.80837 -22.13389 -21.60452 -20.57524 -19.41385 -18.23755 -17.94845 -17.55150 -17.45305 -17.19314 -16.87626 -16.17033 -16.00755 -15.78499 -15.56671 -15.31387 -15.16395 -15.00560 -14.52291 -14.27300 -14.07674 -13.93398 -13.89285 -13.56751 -13.41893 -13.20178 -13.09269 -12.84724 -12.76348 -12.58040 -12.22119 -12.16077 -12.09104 -12.05867 -12.00718 -11.53322 -11.30037 -11.16237 -10.64076 -10.20165 -9.78745 -9.58617 -9.34792 -8.57890 -7.90363 -5.43642 -0.21332 0.56065 0.58982 1.32418 1.38180 1.39875 1.46256 1.50946 2.01264 2.28604 2.41931 2.95081 3.11594 3.25720 3.49491 3.67906 3.75778 3.94414 4.03448 4.10552 4.23331 4.32872 4.38332 4.43128 4.45268 4.52099 4.60683 4.66221 4.67909 4.78741 4.83353 4.89088 4.97539 4.98525 5.09921 5.22117 5.25719 5.28576 5.39346 5.42426 5.62702 5.68371 5.71016 5.73433 5.93994 6.24402 6.34241 6.41075 6.58152 7.02881 7.10988 7.75024 8.36435 9.13867 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011713 B = 0.004465 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.951049 B = 6269.007635 C = 8062.064361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.067 3.933 3 N -0.516 5.516 4 C 0.214 3.786 5 O -0.196 6.196 6 C -0.133 4.133 7 C 0.598 3.402 8 O -0.554 6.554 9 N -0.680 5.680 10 C 0.146 3.854 11 C 0.199 3.801 12 H 0.039 0.961 13 C -0.101 4.101 14 C -0.125 4.125 15 C -0.127 4.127 16 C -0.123 4.123 17 C -0.134 4.134 18 C -0.074 4.074 19 C -0.096 4.096 20 C 0.168 3.832 21 N -0.596 5.596 22 C -0.241 4.241 23 H 0.059 0.941 24 C -0.019 4.019 25 N -0.915 5.915 26 Si 0.933 3.067 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.283 1.283 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.303 0.697 34 H 0.414 0.586 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.133 0.867 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.010 0.990 44 H 0.067 0.933 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.468 -2.075 -7.452 9.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 N -0.245 5.245 4 C -0.010 4.010 5 O -0.082 6.082 6 C -0.188 4.188 7 C 0.384 3.616 8 O -0.436 6.436 9 N -0.329 5.329 10 C 0.022 3.978 11 C 0.092 3.908 12 H 0.056 0.944 13 C -0.103 4.103 14 C -0.144 4.144 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.152 4.152 18 C -0.075 4.075 19 C -0.135 4.135 20 C 0.043 3.957 21 N -0.320 5.320 22 C -0.371 4.371 23 H 0.076 0.924 24 C -0.217 4.217 25 N -0.560 5.560 26 Si 0.763 3.237 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.209 1.209 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.318 0.682 34 H 0.252 0.748 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.149 0.851 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.151 0.849 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.028 0.972 44 H 0.085 0.915 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.250 -1.629 -7.375 9.803 hybrid contribution 1.129 0.411 1.128 1.649 sum -5.121 -1.218 -6.247 8.169 Atomic orbital electron populations 1.20387 0.84212 1.04661 1.03942 1.22400 0.99317 0.86364 0.97542 1.70354 1.02053 1.31151 1.20957 1.29503 0.98452 0.79111 0.93958 1.84580 1.29284 1.25507 1.68824 1.22904 0.82109 0.96324 1.17507 1.16454 0.85591 0.82075 0.77526 1.90766 1.16373 1.82574 1.53894 1.46005 1.10439 1.05933 1.70502 1.21359 0.96121 0.79042 1.01233 1.19561 0.91832 0.89845 0.89545 0.94404 1.20065 0.98527 0.95437 0.96232 1.21317 0.97637 0.97383 0.98033 1.21345 1.00536 0.92724 0.99916 1.21363 0.97333 1.00701 0.94645 1.21414 0.99060 0.94874 0.99803 1.19732 0.98003 0.93743 0.95977 1.20969 0.97530 0.99161 0.95840 1.20678 0.90027 0.86729 0.98275 1.44091 1.46573 1.19961 1.21338 1.19136 0.92319 1.00234 1.25391 0.92395 1.25537 0.95139 0.99177 1.01863 1.70046 0.98371 1.43796 1.43789 0.85749 0.77055 0.80881 0.80064 1.21280 1.21639 1.20926 0.89890 0.88657 0.89454 0.68227 0.74829 0.89647 0.93101 0.85054 0.83441 0.83459 0.84919 0.90183 0.92389 0.97188 0.91472 0.93854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.06 9.87 71.23 0.70 -1.35 16 2 C 0.07 2.21 7.16 41.83 0.30 2.51 16 3 N -0.52 -15.37 11.26 -303.13 -3.41 -18.78 16 4 C 0.21 5.47 13.21 130.42 1.72 7.19 16 5 O -0.20 -6.56 10.57 -7.11 -0.08 -6.64 16 6 C -0.13 -4.83 7.18 24.04 0.17 -4.66 16 7 C 0.60 23.41 7.78 86.46 0.67 24.08 16 8 O -0.55 -22.81 14.79 -4.30 -0.06 -22.87 16 9 N -0.68 -26.60 3.47 -467.04 -1.62 -28.22 16 10 C 0.15 5.46 4.13 86.38 0.36 5.81 16 11 C 0.20 7.77 3.05 44.25 0.13 7.90 16 12 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 13 C -0.10 -3.51 5.43 -19.82 -0.11 -3.62 16 14 C -0.13 -3.56 9.07 22.35 0.20 -3.36 16 15 C -0.13 -3.01 10.05 22.21 0.22 -2.79 16 16 C -0.12 -2.86 10.04 22.20 0.22 -2.64 16 17 C -0.13 -3.70 9.59 22.37 0.21 -3.48 16 18 C -0.07 -2.55 5.76 -19.85 -0.11 -2.67 16 19 C -0.10 -3.56 5.87 29.75 0.17 -3.38 16 20 C 0.17 7.58 5.58 86.17 0.48 8.06 16 21 N -0.60 -27.46 2.91 -680.10 -1.98 -29.44 16 22 C -0.24 -12.09 6.96 84.03 0.58 -11.50 16 23 H 0.06 3.05 5.89 -2.91 -0.02 3.03 16 24 C -0.02 -1.00 5.05 84.86 0.43 -0.58 16 25 N -0.92 -49.48 11.30 21.65 0.24 -49.24 16 26 Si 0.93 43.65 29.57 68.60 2.03 45.68 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 29 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 30 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 2.53 6.47 -2.38 -0.02 2.52 16 33 H 0.30 3.83 8.06 -2.91 -0.02 3.80 16 34 H 0.41 17.21 7.11 -92.71 -0.66 16.55 16 35 H 0.09 2.76 6.64 -2.39 -0.02 2.74 16 36 H 0.05 2.13 7.81 -2.39 -0.02 2.12 16 37 H 0.13 3.28 6.70 -2.91 -0.02 3.26 16 38 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.13 3.09 8.05 -2.91 -0.02 3.07 16 41 H 0.08 2.55 8.10 -2.39 -0.02 2.53 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.07 3.42 6.04 -2.38 -0.01 3.40 16 45 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 Total: -1.00 -65.10 366.97 1.88 -63.22 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.38 Total: 30.75 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 6.37 Total: 15.53 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -6.76 Total: -125.67 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.14 Total: -29.51 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -65.10 1.88 -63.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948906466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.950 kcal (2) G-P(sol) polarization free energy of solvation -65.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds