Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35319 * 128.03681 * 2 1 4 4 O 1.34019 * 106.66692 * 180.02562 * 3 2 1 5 5 N 1.20900 * 111.84410 * 0.02562 * 4 3 2 6 6 C 1.30985 * 111.44540 * 359.97438 * 5 4 3 7 7 C 1.48326 * 126.94152 * 179.97438 * 6 5 4 8 8 O 1.21497 * 120.00329 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00049 * 0.02694 * 7 6 5 10 10 C 1.46501 * 120.00023 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46809 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.44091 * 64.99862 * 11 10 9 13 13 C 1.50816 * 109.43831 * 184.91889 * 11 10 9 14 14 C 1.38927 * 117.74217 * 289.10574 * 13 11 10 15 15 C 1.37952 * 120.49357 * 179.57236 * 14 13 11 16 16 C 1.38263 * 119.71552 * 359.97438 * 15 14 13 17 17 C 1.37914 * 119.82433 * 0.21652 * 16 15 14 18 18 C 1.37584 * 122.41823 * 109.03195 * 13 11 10 19 19 C 1.50606 * 122.84669 * 0.70208 * 18 13 11 20 20 C 1.52789 * 110.85714 * 340.29830 * 19 18 13 21 21 N 1.46684 * 109.43772 * 305.08176 * 11 10 9 22 22 C 1.36937 * 121.34964 * 104.26160 * 21 11 10 23 23 H 1.07998 * 120.00034 * 333.24138 * 22 21 11 24 24 C 1.38812 * 120.00343 * 153.22929 * 22 21 11 25 25 N 1.31616 * 120.00234 * 341.52256 * 24 22 21 26 26 Si 1.86802 * 119.99952 * 161.51059 * 24 22 21 27 27 H 1.48493 * 109.46986 * 60.00686 * 26 24 22 28 28 H 1.48506 * 109.47028 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47207 * 300.00507 * 26 24 22 30 30 H 1.08997 * 109.47169 * 89.96669 * 1 2 3 31 31 H 1.08996 * 109.47140 * 209.96887 * 1 2 3 32 32 H 1.08998 * 109.47070 * 329.96903 * 1 2 3 33 33 H 1.08003 * 126.66827 * 359.97438 * 3 2 1 34 34 H 0.97000 * 119.99655 * 0.02562 * 9 7 6 35 35 H 1.08998 * 109.46826 * 299.99921 * 10 9 7 36 36 H 1.08994 * 109.46939 * 60.00376 * 10 9 7 37 37 H 1.08008 * 119.76260 * 359.56084 * 14 13 11 38 38 H 1.07997 * 120.14358 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.09449 * 180.19461 * 16 15 14 40 40 H 1.08005 * 119.70598 * 179.97438 * 17 16 15 41 41 H 1.08998 * 109.20066 * 219.94465 * 19 18 13 42 42 H 1.09000 * 109.15992 * 100.63061 * 19 18 13 43 43 H 1.08997 * 109.78277 * 287.84565 * 20 19 18 44 44 H 1.08999 * 109.82554 * 167.05944 * 20 19 18 45 45 H 0.97001 * 120.00582 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5774 -0.0006 5 7 3.5988 -0.6315 -0.0014 6 6 2.3837 -1.1205 -0.0010 7 6 1.9992 -2.5531 -0.0022 8 8 0.8256 -2.8671 -0.0021 9 7 2.9519 -3.5065 -0.0035 10 6 2.5722 -4.9214 -0.0042 11 6 3.8332 -5.7878 -0.0050 12 1 4.3785 -5.6357 0.9265 13 6 3.4445 -7.2398 -0.1276 14 6 2.8333 -7.8403 0.9660 15 6 2.4463 -9.1633 0.9125 16 6 2.6682 -9.8963 -0.2386 17 6 3.2784 -9.3021 -1.3232 18 6 3.6729 -7.9705 -1.2708 19 6 4.3422 -7.3922 -2.4898 20 6 4.2748 -5.8659 -2.4748 21 7 4.6855 -5.4083 -1.1369 22 6 5.8175 -4.6592 -0.9567 23 1 5.8914 -3.9862 -0.1153 24 6 6.8703 -4.7650 -1.8552 25 7 6.9544 -5.8105 -2.6503 26 14 8.1675 -3.4233 -1.9362 27 1 8.8345 -3.2993 -0.6154 28 1 9.1757 -3.7713 -2.9696 29 1 7.5233 -2.1325 -2.2886 30 1 -0.3633 0.0006 -1.0276 31 1 -0.3633 -0.8902 0.5133 32 1 -0.3633 0.8897 0.5143 33 1 2.0559 2.1076 -0.0004 34 1 3.8889 -3.2557 -0.0032 35 1 1.9824 -5.1397 0.8860 36 1 1.9812 -5.1385 -0.8939 37 1 2.6600 -7.2671 1.8649 38 1 1.9712 -9.6243 1.7659 39 1 2.3648 -10.9317 -0.2882 40 1 3.4512 -9.8766 -2.2213 41 1 3.8419 -7.7644 -3.3839 42 1 5.3862 -7.7049 -2.5069 43 1 3.2551 -5.5396 -2.6793 44 1 4.9501 -5.4587 -3.2273 45 1 7.6898 -5.8843 -3.2785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948977812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = 57.498933 kcal Electronic energy + Delta-G solvation = -29984.646755 eV Core-core repulsion = 25970.227751 eV Total energy + Delta-G solvation = -4014.419004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.14922 -41.15256 -40.38353 -37.89772 -35.92758 -35.62417 -34.11630 -33.78622 -33.02102 -31.55264 -30.16763 -29.21041 -28.61786 -26.48610 -25.08372 -24.16173 -23.50559 -22.71226 -22.61003 -21.55885 -20.31900 -19.43074 -18.85794 -18.51116 -17.63777 -17.31334 -17.17356 -16.77463 -16.32210 -16.01767 -15.76348 -15.56164 -15.38830 -15.09773 -14.67364 -14.30386 -14.21973 -14.09846 -14.00588 -13.90192 -13.77531 -13.34900 -13.29504 -12.95541 -12.81091 -12.75132 -12.58841 -12.34588 -12.27614 -12.14746 -11.83529 -11.62819 -11.37764 -11.35186 -11.22004 -10.52541 -10.39133 -10.15482 -9.58190 -9.33621 -8.73064 -7.89351 -5.34089 0.11038 0.54801 0.60626 0.73936 1.45587 1.48709 1.54064 1.91178 2.05816 2.34606 2.47439 2.92483 2.96635 3.26843 3.49902 3.60459 3.91388 3.92094 4.04150 4.10398 4.13182 4.27922 4.31576 4.34601 4.45094 4.55260 4.58345 4.74002 4.75472 4.79447 4.83665 4.92915 4.95043 4.96459 5.04776 5.18501 5.22625 5.29712 5.38694 5.49237 5.57506 5.66816 5.68892 5.81370 5.97741 6.23842 6.34771 6.35255 6.91892 7.09957 7.12735 7.75968 8.33020 9.15680 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009181 B = 0.004512 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.035523 B = 6203.497046 C = 8672.959541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.170 4.170 3 C -0.040 4.040 4 O 0.132 5.868 5 N -0.355 5.355 6 C -0.061 4.061 7 C 0.588 3.412 8 O -0.557 6.557 9 N -0.693 5.693 10 C 0.126 3.874 11 C 0.197 3.803 12 H 0.071 0.929 13 C -0.103 4.103 14 C -0.123 4.123 15 C -0.130 4.130 16 C -0.121 4.121 17 C -0.140 4.140 18 C -0.070 4.070 19 C -0.084 4.084 20 C 0.170 3.830 21 N -0.588 5.588 22 C -0.261 4.261 23 H 0.067 0.933 24 C -0.033 4.033 25 N -0.912 5.912 26 Si 0.955 3.045 27 H -0.278 1.278 28 H -0.295 1.295 29 H -0.284 1.284 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.281 0.719 34 H 0.412 0.588 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.127 0.873 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.005 0.995 44 H 0.065 0.935 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 6.536 6.181 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.176 4.176 3 C -0.120 4.120 4 O 0.053 5.947 5 N -0.054 5.054 6 C -0.218 4.218 7 C 0.373 3.627 8 O -0.435 6.435 9 N -0.344 5.344 10 C 0.000 4.000 11 C 0.089 3.911 12 H 0.089 0.911 13 C -0.104 4.104 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.139 4.139 17 C -0.158 4.158 18 C -0.070 4.070 19 C -0.122 4.122 20 C 0.045 3.955 21 N -0.309 5.309 22 C -0.390 4.390 23 H 0.084 0.916 24 C -0.231 4.231 25 N -0.557 5.557 26 Si 0.784 3.216 27 H -0.204 1.204 28 H -0.221 1.221 29 H -0.211 1.211 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.296 0.704 34 H 0.249 0.751 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.151 0.849 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.023 0.977 44 H 0.083 0.917 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.381 5.600 6.053 14.054 hybrid contribution 0.858 0.577 -0.523 1.159 sum -10.522 6.177 5.530 13.396 Atomic orbital electron populations 1.20216 0.85297 1.04236 1.03439 1.21722 1.00138 0.89594 1.06109 1.26765 0.80427 1.02795 1.02046 1.84760 1.31111 1.14254 1.64577 1.74301 1.22068 0.92756 1.16229 1.23556 0.90672 0.97041 1.10543 1.17216 0.85330 0.83381 0.76805 1.90697 1.18084 1.82423 1.52342 1.45919 1.10417 1.06396 1.71639 1.21835 0.97799 0.79296 1.01037 1.19626 0.90267 0.88975 0.92272 0.91056 1.20042 0.99881 0.95996 0.94517 1.21350 0.98784 0.96224 0.97810 1.21329 1.00709 0.93796 0.98974 1.21347 0.98783 1.00802 0.92962 1.21390 1.00343 0.94001 1.00090 1.19827 0.97108 0.94528 0.95537 1.20728 0.99874 0.97719 0.93887 1.20618 0.94518 0.92196 0.88197 1.44159 1.24915 1.60857 1.01015 1.19194 0.92869 1.15403 1.11581 0.91551 1.25567 0.98573 0.98348 1.00574 1.70100 1.32311 1.27463 1.25784 0.85538 0.79036 0.79776 0.77223 1.20386 1.22100 1.21067 0.90439 0.92062 0.87397 0.70406 0.75112 0.90423 0.93455 0.84924 0.83252 0.83453 0.85549 0.91939 0.91324 0.97734 0.91704 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.17 -4.04 6.34 -19.54 -0.12 -4.16 16 3 C -0.04 -0.66 12.24 67.15 0.82 0.16 16 4 O 0.13 3.29 11.18 71.86 0.80 4.09 16 5 N -0.36 -11.80 11.84 -49.51 -0.59 -12.39 16 6 C -0.06 -2.02 7.19 42.96 0.31 -1.71 16 7 C 0.59 22.49 7.85 86.93 0.68 23.17 16 8 O -0.56 -22.58 15.34 -3.71 -0.06 -22.64 16 9 N -0.69 -27.26 5.38 -465.51 -2.51 -29.77 16 10 C 0.13 4.82 5.01 86.38 0.43 5.26 16 11 C 0.20 8.07 2.50 44.25 0.11 8.18 16 12 H 0.07 2.97 7.98 -2.39 -0.02 2.95 16 13 C -0.10 -3.93 5.17 -19.82 -0.10 -4.03 16 14 C -0.12 -3.85 9.34 22.37 0.21 -3.64 16 15 C -0.13 -3.45 10.05 22.21 0.22 -3.23 16 16 C -0.12 -3.27 10.04 22.20 0.22 -3.05 16 17 C -0.14 -4.58 9.59 22.37 0.21 -4.37 16 18 C -0.07 -2.75 5.76 -19.87 -0.11 -2.87 16 19 C -0.08 -3.65 5.77 29.75 0.17 -3.48 16 20 C 0.17 8.17 5.46 86.17 0.47 8.64 16 21 N -0.59 -28.21 2.30 -680.08 -1.56 -29.78 16 22 C -0.26 -13.62 8.72 84.03 0.73 -12.89 16 23 H 0.07 3.40 7.29 -2.91 -0.02 3.38 16 24 C -0.03 -1.78 4.93 84.86 0.42 -1.36 16 25 N -0.91 -50.85 10.13 21.65 0.22 -50.63 16 26 Si 0.96 44.36 29.59 68.60 2.03 46.39 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 28 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 29 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.50 6.89 -2.39 -0.02 1.48 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.28 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.41 17.18 6.44 -92.71 -0.60 16.58 16 35 H 0.08 2.69 8.03 -2.39 -0.02 2.67 16 36 H 0.05 1.96 7.54 -2.39 -0.02 1.95 16 37 H 0.13 3.56 8.05 -2.91 -0.02 3.53 16 38 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 39 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 40 H 0.13 3.68 8.05 -2.91 -0.02 3.66 16 41 H 0.06 2.44 8.11 -2.39 -0.02 2.42 16 42 H 0.07 3.45 7.11 -2.39 -0.02 3.43 16 43 H 0.00 0.22 7.48 -2.39 -0.02 0.20 16 44 H 0.06 3.49 5.95 -2.39 -0.01 3.47 16 45 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -68.69 370.76 4.17 -64.52 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.43 Total: 30.30 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 5.39 Total: -0.09 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -4.44 Total: -122.56 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.75 Total: -18.55 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -68.69 4.17 -64.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948977812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.018 kcal (2) G-P(sol) polarization free energy of solvation -68.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds