Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46898 * 2 1 4 4 O 1.34261 * 126.52243 * 269.97567 * 3 2 1 5 5 C 1.34047 * 108.22714 * 179.97438 * 4 3 2 6 6 N 1.29934 * 109.24161 * 359.97438 * 5 4 3 7 7 C 1.36068 * 108.47988 * 0.02562 * 6 5 4 8 8 C 1.47416 * 126.44801 * 179.97438 * 7 6 5 9 9 O 1.21610 * 119.99749 * 180.02562 * 8 7 6 10 10 N 1.34782 * 120.00348 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99886 * 180.02562 * 10 8 7 12 12 H 1.08996 * 110.73029 * 36.95138 * 11 10 8 13 13 C 1.54351 * 110.81826 * 273.54522 * 11 10 8 14 14 C 1.51372 * 105.16991 * 268.12267 * 13 11 10 15 15 C 1.38495 * 130.39417 * 162.80856 * 14 13 11 16 16 C 1.38096 * 120.21644 * 180.02562 * 15 14 13 17 17 C 1.38255 * 119.93628 * 0.02562 * 16 15 14 18 18 C 1.38095 * 119.93248 * 359.97438 * 17 16 15 19 19 C 1.38217 * 109.75873 * 342.81808 * 14 13 11 20 20 C 1.51369 * 109.75796 * 359.97438 * 19 14 13 21 21 H 1.09000 * 110.30185 * 136.11509 * 20 19 14 22 22 N 1.46503 * 110.30587 * 258.26882 * 20 19 14 23 23 C 1.36938 * 119.99881 * 270.74630 * 22 20 19 24 24 H 1.08001 * 120.00052 * 0.02562 * 23 22 20 25 25 C 1.38814 * 119.99937 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00133 * 180.02562 * 25 23 22 27 27 Si 1.86805 * 119.99834 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.46667 * 90.00059 * 27 25 23 29 29 H 1.48497 * 109.46957 * 209.99927 * 27 25 23 30 30 H 1.48495 * 109.47235 * 329.99783 * 27 25 23 31 31 H 1.09005 * 109.47037 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47458 * 299.99954 * 1 2 3 33 33 H 1.08994 * 109.47500 * 60.00372 * 1 2 3 34 34 H 1.09000 * 109.46771 * 239.99756 * 2 1 3 35 35 H 1.09001 * 109.46662 * 119.99635 * 2 1 3 36 36 H 1.08001 * 125.38019 * 179.97438 * 5 4 3 37 37 H 0.96999 * 119.99524 * 0.02562 * 10 8 7 38 38 H 1.08999 * 110.30446 * 27.04566 * 13 11 10 39 39 H 1.09000 * 110.30132 * 149.11001 * 13 11 10 40 40 H 1.08004 * 119.88808 * 359.97438 * 15 14 13 41 41 H 1.08003 * 120.03624 * 180.02562 * 16 15 14 42 42 H 1.08006 * 120.02999 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.89017 * 180.02562 * 18 17 16 44 44 H 0.96992 * 119.99904 * 90.74571 * 22 20 19 45 45 H 0.96994 * 120.00093 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2990 2.1740 -1.0790 5 6 2.7225 3.3742 -0.6582 6 7 2.7283 3.3949 0.6410 7 6 2.3009 2.1849 1.0936 8 6 2.1564 1.7783 2.5031 9 8 1.7623 0.6607 2.7762 10 7 2.4610 2.6451 3.4893 11 6 2.3179 2.2407 4.8901 12 1 2.5997 1.1960 5.0207 13 6 0.8777 2.4871 5.3877 14 6 0.8975 3.8777 5.9852 15 6 -0.1438 4.7382 6.2907 16 6 0.1176 5.9788 6.8380 17 6 1.4228 6.3643 7.0817 18 6 2.4625 5.5077 6.7778 19 6 2.2023 4.2628 6.2296 20 6 3.1486 3.1570 5.8137 21 1 3.9982 3.5707 5.2705 22 7 3.6087 2.4127 6.9887 23 6 4.7326 2.8172 7.6584 24 1 5.2795 3.6850 7.3206 25 6 5.1682 2.1123 8.7721 26 7 6.2482 2.5013 9.4162 27 14 4.2217 0.6117 9.3568 28 1 4.7560 -0.6019 8.6882 29 1 4.3725 0.4735 10.8276 30 1 2.7844 0.7706 9.0194 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.0130 4.1944 -1.2979 37 1 2.7750 3.5366 3.2714 38 1 0.1768 2.4436 4.5541 39 1 0.6088 1.7519 6.1462 40 1 -1.1636 4.4383 6.0995 41 1 -0.6967 6.6474 7.0755 42 1 1.6290 7.3344 7.5093 43 1 3.4817 5.8094 6.9688 44 1 3.1172 1.6336 7.2923 45 1 6.5528 2.0086 10.1941 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960256719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = 29.166703 kcal Electronic energy + Delta-G solvation = -29411.900114 eV Core-core repulsion = 25396.252533 eV Total energy + Delta-G solvation = -4015.647581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.67375 -40.30469 -38.96979 -36.29615 -35.09875 -34.45706 -33.98883 -32.53889 -31.29707 -30.12528 -29.59050 -27.95033 -26.38985 -24.90450 -23.85243 -22.84285 -22.28520 -21.51115 -20.77910 -20.22949 -20.07813 -18.38409 -17.72515 -17.06339 -16.44759 -16.20578 -15.78481 -15.30463 -15.10843 -14.84879 -14.59510 -14.45835 -14.35492 -13.90077 -13.83316 -13.62603 -13.00722 -12.99691 -12.85868 -12.81330 -12.61916 -12.01802 -11.78588 -11.69650 -11.51078 -11.50406 -11.28055 -11.15549 -10.94294 -10.87364 -10.66275 -10.42286 -10.19281 -10.09061 -9.65837 -9.24356 -9.07395 -8.90946 -8.37346 -8.16476 -7.40120 -5.83935 -3.21331 0.90052 1.77550 1.83978 1.86255 2.30664 3.10672 3.25425 3.36102 3.38945 3.43721 3.82937 4.18198 4.32867 4.54063 4.59932 4.68983 4.81422 4.93426 4.96505 5.04013 5.27102 5.27726 5.37473 5.42155 5.42588 5.48150 5.52029 5.58177 5.61618 5.72896 5.80527 5.87940 5.89731 5.92535 6.00241 6.08991 6.17523 6.26665 6.43614 6.55137 6.66416 6.84368 6.93912 7.16505 7.18021 7.43687 7.61429 7.88364 8.19459 8.33467 9.09293 9.81744 9.99164 11.33460 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.003518 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.357130 B = 7956.940326 C = 9160.195242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.044 3.956 4 O -0.200 6.200 5 C 0.172 3.828 6 N -0.461 5.461 7 C -0.072 4.072 8 C 0.603 3.397 9 O -0.534 6.534 10 N -0.693 5.693 11 C 0.134 3.866 12 H 0.108 0.892 13 C -0.087 4.087 14 C -0.099 4.099 15 C -0.115 4.115 16 C -0.129 4.129 17 C -0.127 4.127 18 C -0.084 4.084 19 C -0.095 4.095 20 C 0.213 3.787 21 H 0.074 0.926 22 N -0.728 5.728 23 C -0.248 4.248 24 H 0.093 0.907 25 C 0.012 3.988 26 N -0.928 5.928 27 Si 0.880 3.120 28 H -0.281 1.281 29 H -0.289 1.289 30 H -0.275 1.275 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.255 0.745 37 H 0.410 0.590 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.365 0.635 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.601 1.794 -20.494 24.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 C -0.012 4.012 4 O -0.087 6.087 5 C -0.056 4.056 6 N -0.189 5.189 7 C -0.192 4.192 8 C 0.388 3.612 9 O -0.412 6.412 10 N -0.343 5.343 11 C 0.028 3.972 12 H 0.126 0.874 13 C -0.125 4.125 14 C -0.099 4.099 15 C -0.133 4.133 16 C -0.148 4.148 17 C -0.145 4.145 18 C -0.103 4.103 19 C -0.098 4.098 20 C 0.102 3.898 21 H 0.092 0.908 22 N -0.369 5.369 23 C -0.377 4.377 24 H 0.111 0.889 25 C -0.184 4.184 26 N -0.575 5.575 27 Si 0.710 3.290 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.202 1.202 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.270 0.730 37 H 0.245 0.755 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.198 0.802 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.430 1.592 -19.804 23.436 hybrid contribution -0.594 -0.710 0.142 0.937 sum -13.024 0.882 -19.662 23.601 Atomic orbital electron populations 1.21702 0.93067 1.02929 1.02414 1.20402 0.97094 0.85383 1.05537 1.23815 0.98544 0.95546 0.83325 1.84373 1.63754 1.24219 1.36331 1.28010 0.99335 0.87030 0.91256 1.70761 1.16830 1.21203 1.10150 1.21517 1.10508 0.91492 0.95645 1.16670 0.77546 0.84512 0.82466 1.90782 1.47235 1.19983 1.83166 1.45664 1.66199 1.17132 1.05297 1.21966 0.95121 1.00745 0.79334 0.87425 1.21415 0.97191 0.93850 1.00043 1.20507 0.93966 0.95700 0.99777 1.20459 0.97778 0.94093 1.01001 1.20870 0.96552 0.96357 1.00995 1.20999 0.92786 0.99634 1.01051 1.20671 0.99346 0.92931 0.97361 1.21587 0.95864 0.94755 0.97610 1.19748 0.93456 0.88330 0.88221 0.90797 1.42605 1.30756 1.32133 1.31384 1.19015 0.99953 1.11370 1.07373 0.88926 1.24632 0.97340 0.98823 0.97621 1.69688 1.24523 1.41538 1.21701 0.86618 0.79916 0.84168 0.78325 1.20790 1.21577 1.20153 0.91026 0.91704 0.92717 0.89781 0.86297 0.72970 0.75472 0.90827 0.89559 0.87180 0.86729 0.86523 0.86129 0.80159 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.05 -0.43 5.93 -27.88 -0.17 -0.60 16 3 C 0.04 0.49 6.69 -35.08 -0.23 0.26 16 4 O -0.20 -1.91 10.73 6.51 0.07 -1.84 16 5 C 0.17 1.43 13.19 51.96 0.69 2.12 16 6 N -0.46 -5.48 11.06 -11.49 -0.13 -5.61 16 7 C -0.07 -0.94 6.99 -83.02 -0.58 -1.52 16 8 C 0.60 9.04 7.81 -12.52 -0.10 8.94 16 9 O -0.53 -8.80 14.54 5.27 0.08 -8.72 16 10 N -0.69 -10.32 5.14 -53.51 -0.28 -10.60 16 11 C 0.13 2.22 2.94 -66.51 -0.20 2.02 16 12 H 0.11 1.92 7.64 -51.93 -0.40 1.52 16 13 C -0.09 -1.35 6.48 -26.85 -0.17 -1.53 16 14 C -0.10 -1.64 6.14 -104.20 -0.64 -2.28 16 15 C -0.12 -1.73 10.04 -39.54 -0.40 -2.13 16 16 C -0.13 -1.86 10.05 -39.63 -0.40 -2.26 16 17 C -0.13 -1.95 10.05 -39.63 -0.40 -2.35 16 18 C -0.08 -1.50 10.04 -39.54 -0.40 -1.90 16 19 C -0.09 -1.73 5.77 -104.21 -0.60 -2.33 16 20 C 0.21 4.07 3.11 -68.04 -0.21 3.85 16 21 H 0.07 1.43 7.99 -51.93 -0.42 1.02 16 22 N -0.73 -16.83 4.94 -53.53 -0.26 -17.10 16 23 C -0.25 -6.77 10.44 -15.06 -0.16 -6.93 16 24 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 25 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 26 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 27 Si 0.88 21.93 27.74 -169.99 -4.71 17.21 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.28 -6.52 6.52 56.52 0.37 -6.16 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.12 1.27 6.48 -51.93 -0.34 0.94 16 36 H 0.25 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.41 5.79 8.31 -40.82 -0.34 5.45 16 38 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 41 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 42 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 43 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 44 H 0.36 8.40 5.69 -40.82 -0.23 8.17 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -33.40 381.48 -8.36 -41.76 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -5.96 Total: 14.15 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -3.69 Total: -7.18 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.11 Total: -61.13 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.15 Total: -10.56 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.40 -8.36 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960256719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.929 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds