Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.46898 * 2 1 4 4 O 1.34261 * 126.52243 * 269.97567 * 3 2 1 5 5 C 1.34047 * 108.22714 * 179.97438 * 4 3 2 6 6 N 1.29934 * 109.24161 * 359.97438 * 5 4 3 7 7 C 1.36068 * 108.47988 * 0.02562 * 6 5 4 8 8 C 1.47416 * 126.44801 * 179.97438 * 7 6 5 9 9 O 1.21610 * 119.99749 * 180.02562 * 8 7 6 10 10 N 1.34782 * 120.00348 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99886 * 180.02562 * 10 8 7 12 12 H 1.08996 * 110.73029 * 36.95138 * 11 10 8 13 13 C 1.54351 * 110.81826 * 273.54522 * 11 10 8 14 14 C 1.51372 * 105.16991 * 268.12267 * 13 11 10 15 15 C 1.38495 * 130.39417 * 162.80856 * 14 13 11 16 16 C 1.38096 * 120.21644 * 180.02562 * 15 14 13 17 17 C 1.38255 * 119.93628 * 0.02562 * 16 15 14 18 18 C 1.38095 * 119.93248 * 359.97438 * 17 16 15 19 19 C 1.38217 * 109.75873 * 342.81808 * 14 13 11 20 20 C 1.51369 * 109.75796 * 359.97438 * 19 14 13 21 21 H 1.09000 * 110.30185 * 136.11509 * 20 19 14 22 22 N 1.46503 * 110.30587 * 258.26882 * 20 19 14 23 23 C 1.36938 * 119.99881 * 270.74630 * 22 20 19 24 24 H 1.08001 * 120.00052 * 0.02562 * 23 22 20 25 25 C 1.38814 * 119.99937 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00133 * 180.02562 * 25 23 22 27 27 Si 1.86805 * 119.99834 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.46667 * 90.00059 * 27 25 23 29 29 H 1.48497 * 109.46957 * 209.99927 * 27 25 23 30 30 H 1.48495 * 109.47235 * 329.99783 * 27 25 23 31 31 H 1.09005 * 109.47037 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47458 * 299.99954 * 1 2 3 33 33 H 1.08994 * 109.47500 * 60.00372 * 1 2 3 34 34 H 1.09000 * 109.46771 * 239.99756 * 2 1 3 35 35 H 1.09001 * 109.46662 * 119.99635 * 2 1 3 36 36 H 1.08001 * 125.38019 * 179.97438 * 5 4 3 37 37 H 0.96999 * 119.99524 * 0.02562 * 10 8 7 38 38 H 1.08999 * 110.30446 * 27.04566 * 13 11 10 39 39 H 1.09000 * 110.30132 * 149.11001 * 13 11 10 40 40 H 1.08004 * 119.88808 * 359.97438 * 15 14 13 41 41 H 1.08003 * 120.03624 * 180.02562 * 16 15 14 42 42 H 1.08006 * 120.02999 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.89017 * 180.02562 * 18 17 16 44 44 H 0.96992 * 119.99904 * 90.74571 * 22 20 19 45 45 H 0.96994 * 120.00093 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2990 2.1740 -1.0790 5 6 2.7225 3.3742 -0.6582 6 7 2.7283 3.3949 0.6410 7 6 2.3009 2.1849 1.0936 8 6 2.1564 1.7783 2.5031 9 8 1.7623 0.6607 2.7762 10 7 2.4610 2.6451 3.4893 11 6 2.3179 2.2407 4.8901 12 1 2.5997 1.1960 5.0207 13 6 0.8777 2.4871 5.3877 14 6 0.8975 3.8777 5.9852 15 6 -0.1438 4.7382 6.2907 16 6 0.1176 5.9788 6.8380 17 6 1.4228 6.3643 7.0817 18 6 2.4625 5.5077 6.7778 19 6 2.2023 4.2628 6.2296 20 6 3.1486 3.1570 5.8137 21 1 3.9982 3.5707 5.2705 22 7 3.6087 2.4127 6.9887 23 6 4.7326 2.8172 7.6584 24 1 5.2795 3.6850 7.3206 25 6 5.1682 2.1123 8.7721 26 7 6.2482 2.5013 9.4162 27 14 4.2217 0.6117 9.3568 28 1 4.7560 -0.6019 8.6882 29 1 4.3725 0.4735 10.8276 30 1 2.7844 0.7706 9.0194 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.0130 4.1944 -1.2979 37 1 2.7750 3.5366 3.2714 38 1 0.1768 2.4436 4.5541 39 1 0.6088 1.7519 6.1462 40 1 -1.1636 4.4383 6.0995 41 1 -0.6967 6.6474 7.0755 42 1 1.6290 7.3344 7.5093 43 1 3.4817 5.8094 6.9688 44 1 3.1172 1.6336 7.2923 45 1 6.5528 2.0086 10.1941 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960256719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = 5.223228 kcal Electronic energy + Delta-G solvation = -29412.938381 eV Core-core repulsion = 25396.252533 eV Total energy + Delta-G solvation = -4016.685848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.46486 -41.61442 -40.17804 -37.66663 -36.01841 -35.79077 -35.06833 -33.97504 -33.04447 -31.64044 -30.44159 -29.17317 -27.93669 -25.95020 -24.76183 -24.46896 -23.45911 -22.53309 -21.87384 -21.65868 -21.27172 -19.88770 -19.19921 -17.86871 -17.69617 -17.17490 -17.14712 -16.50734 -16.32055 -16.02753 -15.87741 -15.75375 -15.50294 -15.45856 -14.99571 -14.71808 -14.46801 -14.32436 -14.21762 -14.03390 -13.59284 -13.56293 -13.08295 -12.89299 -12.71938 -12.66237 -12.46170 -12.40421 -12.22005 -12.18203 -12.04786 -11.82304 -11.77781 -11.70071 -11.22364 -11.05827 -10.33461 -9.94006 -9.67894 -9.51207 -9.35316 -8.05838 -5.41214 0.02644 0.50642 0.55447 1.04500 1.35996 1.38157 1.44562 1.53812 1.98738 2.19063 2.44747 2.88169 3.07997 3.24818 3.31527 3.54803 3.61516 3.70036 3.83802 3.98963 4.08472 4.11590 4.22095 4.24677 4.28329 4.30278 4.41373 4.56005 4.62234 4.69769 4.74698 4.79511 4.83837 4.90656 4.95326 5.11272 5.16568 5.19081 5.25447 5.27069 5.37685 5.61011 5.67176 5.69984 5.84811 6.15968 6.18788 6.25812 6.56511 6.99522 7.03080 7.72174 7.92360 9.14943 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.003518 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.357130 B = 7956.940326 C = 9160.195242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C 0.050 3.950 4 O -0.196 6.196 5 C 0.197 3.803 6 N -0.497 5.497 7 C -0.102 4.102 8 C 0.600 3.400 9 O -0.554 6.554 10 N -0.691 5.691 11 C 0.145 3.855 12 H 0.094 0.906 13 C -0.079 4.079 14 C -0.103 4.103 15 C -0.115 4.115 16 C -0.119 4.119 17 C -0.128 4.128 18 C -0.110 4.110 19 C -0.118 4.118 20 C 0.211 3.789 21 H 0.058 0.942 22 N -0.733 5.733 23 C -0.228 4.228 24 H 0.061 0.939 25 C -0.053 4.053 26 N -0.978 5.978 27 Si 0.945 3.055 28 H -0.277 1.277 29 H -0.294 1.294 30 H -0.255 1.255 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.305 0.695 37 H 0.412 0.588 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.140 0.860 41 H 0.153 0.847 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.367 0.633 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.718 1.973 -22.560 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.007 4.007 4 O -0.083 6.083 5 C -0.032 4.032 6 N -0.226 5.226 7 C -0.221 4.221 8 C 0.387 3.613 9 O -0.433 6.433 10 N -0.341 5.341 11 C 0.039 3.961 12 H 0.112 0.888 13 C -0.117 4.117 14 C -0.103 4.103 15 C -0.133 4.133 16 C -0.137 4.137 17 C -0.146 4.146 18 C -0.129 4.129 19 C -0.121 4.121 20 C 0.102 3.898 21 H 0.076 0.924 22 N -0.374 5.374 23 C -0.359 4.359 24 H 0.079 0.921 25 C -0.245 4.245 26 N -0.628 5.628 27 Si 0.773 3.227 28 H -0.203 1.203 29 H -0.221 1.221 30 H -0.179 1.179 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.319 0.681 37 H 0.248 0.752 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.158 0.842 41 H 0.170 0.830 42 H 0.158 0.842 43 H 0.118 0.882 44 H 0.201 0.799 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.592 1.794 -21.915 26.955 hybrid contribution 0.382 -0.590 0.603 0.926 sum -15.210 1.204 -21.312 26.211 Atomic orbital electron populations 1.21669 0.92245 1.03822 1.01840 1.20469 0.97700 0.84474 1.05865 1.24073 0.97414 0.96070 0.83150 1.84416 1.63705 1.24568 1.35573 1.29164 0.96113 0.87152 0.90760 1.70730 1.18698 1.21096 1.12044 1.21304 1.12972 0.92881 0.94903 1.16962 0.76882 0.84085 0.83325 1.90760 1.48164 1.20668 1.83736 1.45570 1.66522 1.17357 1.04652 1.21653 0.95416 0.99116 0.79895 0.88844 1.21351 0.96326 0.93573 1.00409 1.20657 0.93621 0.96200 0.99862 1.20858 0.98701 0.93865 0.99890 1.21320 0.96916 0.96492 0.98997 1.21289 0.92761 1.00096 1.00427 1.20749 0.99430 0.93821 0.98863 1.21376 0.96343 0.94917 0.99476 1.19832 0.93727 0.89065 0.87166 0.92353 1.42516 1.29913 1.32849 1.32165 1.18929 1.00489 1.09555 1.06885 0.92137 1.25373 0.98602 1.02280 0.98279 1.69856 1.26763 1.43487 1.22679 0.85555 0.79627 0.80328 0.77230 1.20285 1.22066 1.17941 0.89450 0.93905 0.91535 0.87209 0.88151 0.68061 0.75170 0.89615 0.89225 0.84211 0.82968 0.84223 0.88153 0.79901 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.89 71.98 0.71 -1.37 16 2 C -0.05 -0.82 5.93 29.85 0.18 -0.64 16 3 C 0.05 1.06 6.69 25.18 0.17 1.22 16 4 O -0.20 -3.25 10.73 0.37 0.00 -3.25 16 5 C 0.20 2.74 13.19 130.52 1.72 4.46 16 6 N -0.50 -11.28 11.06 -305.16 -3.37 -14.66 16 7 C -0.10 -2.64 6.99 40.40 0.28 -2.36 16 8 C 0.60 18.26 7.81 86.66 0.68 18.94 16 9 O -0.55 -18.54 14.54 -4.06 -0.06 -18.60 16 10 N -0.69 -21.05 5.14 -441.45 -2.27 -23.32 16 11 C 0.15 4.89 2.94 45.91 0.13 5.03 16 12 H 0.09 3.42 7.64 -2.39 -0.02 3.40 16 13 C -0.08 -2.37 6.48 30.52 0.20 -2.17 16 14 C -0.10 -3.27 6.14 -19.59 -0.12 -3.39 16 15 C -0.12 -3.09 10.04 22.30 0.22 -2.87 16 16 C -0.12 -3.01 10.05 22.24 0.22 -2.78 16 17 C -0.13 -3.72 10.05 22.24 0.22 -3.50 16 18 C -0.11 -3.98 10.04 22.30 0.22 -3.76 16 19 C -0.12 -4.37 5.77 -19.60 -0.11 -4.48 16 20 C 0.21 8.36 3.11 44.92 0.14 8.50 16 21 H 0.06 2.44 7.99 -2.39 -0.02 2.42 16 22 N -0.73 -34.77 4.94 -323.28 -1.60 -36.37 16 23 C -0.23 -13.00 10.44 84.03 0.88 -12.12 16 24 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 25 C -0.05 -3.15 5.50 84.86 0.47 -2.69 16 26 N -0.98 -62.73 13.97 21.65 0.30 -62.43 16 27 Si 0.95 46.09 27.74 68.60 1.90 47.99 16 28 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 29 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 30 H -0.25 -11.39 6.52 99.48 0.65 -10.74 16 31 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 2.14 6.48 -2.39 -0.02 2.12 16 36 H 0.30 0.46 8.06 -2.91 -0.02 0.43 16 37 H 0.41 12.07 8.31 -92.71 -0.77 11.30 16 38 H 0.09 2.38 8.09 -2.39 -0.02 2.36 16 39 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 42 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 43 H 0.10 3.92 8.06 -2.91 -0.02 3.90 16 44 H 0.37 16.93 5.69 -92.71 -0.53 16.40 16 45 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -75.83 381.48 0.81 -75.02 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: -0.32 Total: 39.59 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 6.22 Total: -3.98 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -6.94 Total: -136.77 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.06 Total: -21.84 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Total: -75.83 0.81 -75.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960256719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.245 kcal (2) G-P(sol) polarization free energy of solvation -75.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds