Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.30018 * 127.33117 * 269.68267 * 3 2 1 5 5 O 1.20666 * 112.29981 * 179.83445 * 4 3 2 6 6 C 1.33493 * 113.15268 * 0.45808 * 5 4 3 7 7 C 1.37357 * 106.34782 * 359.72831 * 6 5 4 8 8 C 1.47390 * 128.57147 * 179.97438 * 7 6 5 9 9 O 1.21601 * 120.00687 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99746 * 0.03804 * 8 7 6 11 11 C 1.46498 * 120.00004 * 180.02562 * 10 8 7 12 12 H 1.08991 * 110.73177 * 34.30092 * 11 10 8 13 13 C 1.54351 * 110.82041 * 270.89554 * 11 10 8 14 14 C 1.51686 * 105.01651 * 215.57162 * 13 11 10 15 15 C 1.38495 * 130.30476 * 197.10126 * 14 13 11 16 16 C 1.38099 * 120.21469 * 179.80074 * 15 14 13 17 17 C 1.38262 * 119.93081 * 359.97438 * 16 15 14 18 18 C 1.38095 * 119.93539 * 0.02562 * 17 16 15 19 19 C 1.38211 * 109.84140 * 16.91628 * 14 13 11 20 20 C 1.51379 * 109.75895 * 0.16235 * 19 14 13 21 21 H 1.09001 * 110.38359 * 101.77519 * 20 19 14 22 22 N 1.46497 * 110.30224 * 223.88889 * 20 19 14 23 23 C 1.36940 * 119.99782 * 270.74579 * 22 20 19 24 24 H 1.07999 * 120.00221 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99884 * 180.02562 * 23 22 20 26 26 N 1.31614 * 119.99881 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99928 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47383 * 59.99598 * 27 25 23 29 29 H 1.48496 * 109.47107 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46908 * 299.99677 * 27 25 23 31 31 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 34 34 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 35 35 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 36 36 H 1.07999 * 126.82510 * 179.71362 * 6 5 4 37 37 H 0.97003 * 119.99795 * 0.02562 * 10 8 7 38 38 H 1.08994 * 110.30221 * 334.34414 * 13 11 10 39 39 H 1.08991 * 110.30278 * 96.50529 * 13 11 10 40 40 H 1.07996 * 119.89282 * 359.80167 * 15 14 13 41 41 H 1.08003 * 120.03831 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.03041 * 180.02562 * 17 16 15 43 43 H 1.08004 * 119.88964 * 179.97438 * 18 17 16 44 44 H 0.96996 * 120.00271 * 90.74260 * 22 20 19 45 45 H 0.97005 * 119.99924 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3006 2.1622 -1.0338 5 8 2.6845 3.2626 -0.7209 6 6 2.7471 3.4405 0.6006 7 6 2.3298 2.2620 1.1696 8 6 2.2102 1.9234 2.5991 9 8 1.8203 0.8209 2.9323 10 7 2.5327 2.8360 3.5370 11 6 2.4143 2.4994 4.9579 12 1 2.6529 1.4494 5.1268 13 6 1.0025 2.8330 5.4850 14 6 1.2172 3.3107 6.9085 15 6 0.3190 3.4419 7.9545 16 6 0.7470 3.9009 9.1847 17 6 2.0764 4.2302 9.3737 18 6 2.9735 4.1000 8.3319 19 6 2.5460 3.6404 7.0974 20 6 3.3172 3.4119 5.8149 21 1 3.4926 4.3584 5.3036 22 7 4.5902 2.7450 6.0993 23 6 5.7064 3.4890 6.3746 24 1 5.6481 4.5674 6.3825 25 6 6.9128 2.8572 6.6435 26 7 6.9837 1.5430 6.6344 27 14 8.4352 3.8721 7.0198 28 1 8.1899 4.7047 8.2247 29 1 9.5847 2.9660 7.2705 30 1 8.7413 4.7525 5.8637 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5137 0.8901 35 1 1.8934 -0.5139 -0.8900 36 1 3.0632 4.3335 1.1193 37 1 2.8432 3.7158 3.2712 38 1 0.5521 3.6240 4.8854 39 1 0.3738 1.9427 5.4719 40 1 -0.7195 3.1844 7.8077 41 1 0.0442 4.0017 9.9985 42 1 2.4130 4.5889 10.3352 43 1 4.0117 4.3579 8.4802 44 1 4.6425 1.7765 6.0927 45 1 7.8268 1.1014 6.8220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960301361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = 61.180830 kcal Electronic energy + Delta-G solvation = -29210.000955 eV Core-core repulsion = 25195.741611 eV Total energy + Delta-G solvation = -4014.259345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.02660 -40.19973 -38.98887 -36.23348 -35.26155 -34.09253 -33.19672 -31.91600 -31.34230 -31.23728 -29.75109 -27.92634 -26.11143 -25.09330 -24.23332 -23.14411 -22.09860 -21.06132 -20.78106 -20.36376 -20.06893 -18.29741 -17.80273 -17.35742 -16.67551 -16.12733 -15.81088 -15.26563 -15.03819 -14.75375 -14.50943 -14.36176 -14.18376 -13.97977 -13.36144 -13.34240 -13.18169 -12.92757 -12.76916 -12.58211 -12.50571 -12.17962 -11.81624 -11.75973 -11.68781 -11.12400 -11.03312 -10.97902 -10.85822 -10.65690 -10.43989 -10.22281 -10.08845 -10.00371 -9.87542 -9.82364 -9.14022 -8.91501 -8.35341 -8.13120 -7.13933 -5.88005 -3.19082 0.95505 1.68638 1.76408 1.85939 2.77841 3.18838 3.25547 3.35654 3.40663 3.42513 3.89219 4.15304 4.18451 4.48679 4.67911 4.72008 4.90368 5.02973 5.06760 5.17494 5.22856 5.28039 5.34473 5.36841 5.40493 5.47928 5.50606 5.67307 5.72317 5.77127 5.82764 5.90166 6.01235 6.05153 6.10085 6.12236 6.20260 6.29306 6.42863 6.58856 6.67034 6.85823 6.97817 7.19880 7.45319 7.52583 7.57212 8.06344 8.22937 8.27765 9.39899 9.92384 10.27810 11.33393 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.003691 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.828563 B = 7583.285079 C = 9817.403600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C 0.074 3.926 4 N -0.361 5.361 5 O 0.095 5.905 6 C -0.007 4.007 7 C -0.247 4.247 8 C 0.596 3.404 9 O -0.526 6.526 10 N -0.703 5.703 11 C 0.142 3.858 12 H 0.106 0.894 13 C -0.086 4.086 14 C -0.106 4.106 15 C -0.115 4.115 16 C -0.131 4.131 17 C -0.129 4.129 18 C -0.079 4.079 19 C -0.092 4.092 20 C 0.208 3.792 21 H 0.069 0.931 22 N -0.710 5.710 23 C -0.249 4.249 24 H 0.071 0.929 25 C -0.004 4.004 26 N -0.925 5.925 27 Si 0.906 3.094 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.285 1.285 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.227 0.773 37 H 0.399 0.601 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.388 0.612 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.909 4.596 -7.671 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 C -0.089 4.089 4 N -0.068 5.068 5 O 0.036 5.964 6 C -0.089 4.089 7 C -0.254 4.254 8 C 0.382 3.618 9 O -0.403 6.403 10 N -0.353 5.353 11 C 0.037 3.963 12 H 0.124 0.876 13 C -0.125 4.125 14 C -0.107 4.107 15 C -0.133 4.133 16 C -0.149 4.149 17 C -0.147 4.147 18 C -0.097 4.097 19 C -0.096 4.096 20 C 0.096 3.904 21 H 0.086 0.914 22 N -0.350 5.350 23 C -0.380 4.380 24 H 0.089 0.911 25 C -0.202 4.202 26 N -0.572 5.572 27 Si 0.736 3.264 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.243 0.757 37 H 0.233 0.767 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.146 0.854 44 H 0.222 0.778 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.028 3.727 -8.743 16.944 hybrid contribution 1.171 0.708 1.205 1.824 sum -12.856 4.435 -7.538 15.549 Atomic orbital electron populations 1.21653 0.93673 1.02439 1.02099 1.20058 0.96676 0.87384 1.04541 1.24871 0.98849 0.98886 0.86306 1.73664 1.16847 0.92656 1.23634 1.84566 1.62244 1.26515 1.23070 1.26449 0.98119 1.00284 0.84039 1.22401 1.12026 0.95204 0.95773 1.16782 0.77557 0.84551 0.82913 1.90789 1.46254 1.21484 1.81788 1.45687 1.67245 1.16336 1.06032 1.21972 0.94191 1.01647 0.78504 0.87635 1.21397 0.97549 1.01123 0.92386 1.20493 0.94541 1.00761 0.94925 1.20462 0.98628 1.01596 0.92658 1.20883 0.95974 1.01295 0.96767 1.21053 0.93507 1.01438 0.98733 1.20779 0.99986 0.97388 0.91582 1.21633 0.94204 0.96476 0.97270 1.19916 0.86117 0.94826 0.89507 0.91374 1.42409 1.03090 1.06127 1.83374 1.19129 0.87197 0.90488 1.41185 0.91081 1.24755 0.97854 0.95523 1.02034 1.69653 1.25891 1.06843 1.54783 0.86310 0.82881 0.78984 0.78215 1.21136 1.21649 1.21180 0.92894 0.91522 0.92010 0.87947 0.90114 0.75722 0.76667 0.90346 0.90579 0.87111 0.86755 0.86607 0.85443 0.77763 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.90 37.16 0.37 -1.06 16 2 C -0.05 -0.56 6.20 -27.88 -0.17 -0.74 16 3 C 0.07 0.96 6.84 -79.76 -0.55 0.41 16 4 N -0.36 -4.69 12.01 34.78 0.42 -4.27 16 5 O 0.10 1.06 11.06 18.65 0.21 1.27 16 6 C -0.01 -0.06 11.85 30.41 0.36 0.30 16 7 C -0.25 -3.10 6.47 -102.90 -0.67 -3.76 16 8 C 0.60 8.72 7.81 -12.53 -0.10 8.62 16 9 O -0.53 -9.28 15.38 5.28 0.08 -9.20 16 10 N -0.70 -9.40 5.15 -53.52 -0.28 -9.68 16 11 C 0.14 2.25 3.07 -66.52 -0.20 2.05 16 12 H 0.11 1.98 7.30 -51.93 -0.38 1.60 16 13 C -0.09 -1.20 6.52 -26.69 -0.17 -1.38 16 14 C -0.11 -1.65 6.15 -104.05 -0.64 -2.29 16 15 C -0.12 -1.64 10.04 -39.54 -0.40 -2.04 16 16 C -0.13 -1.82 10.05 -39.62 -0.40 -2.22 16 17 C -0.13 -1.98 10.05 -39.63 -0.40 -2.37 16 18 C -0.08 -1.42 10.00 -39.54 -0.40 -1.81 16 19 C -0.09 -1.63 5.79 -104.20 -0.60 -2.23 16 20 C 0.21 3.74 3.23 -68.04 -0.22 3.52 16 21 H 0.07 1.17 7.73 -51.93 -0.40 0.77 16 22 N -0.71 -16.33 5.14 -53.54 -0.28 -16.60 16 23 C -0.25 -6.31 9.69 -15.06 -0.15 -6.46 16 24 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 25 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 26 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 27 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.32 7.11 -51.93 -0.37 0.95 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.23 1.08 7.68 -52.49 -0.40 0.67 16 37 H 0.40 4.20 7.58 -40.82 -0.31 3.89 16 38 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 43 H 0.13 2.48 7.79 -52.48 -0.41 2.07 16 44 H 0.39 9.90 7.61 -40.82 -0.31 9.59 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -31.67 383.71 -8.72 -40.39 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -5.93 Total: 13.84 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -4.42 Total: -11.67 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.59 Total: -56.62 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.29 Total: -7.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.67 -8.72 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960301361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.567 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds