Wall clock time and date at job start Sat Apr 11 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.30018 * 127.33117 * 269.68267 * 3 2 1 5 5 O 1.20666 * 112.29981 * 179.83445 * 4 3 2 6 6 C 1.33493 * 113.15268 * 0.45808 * 5 4 3 7 7 C 1.37357 * 106.34782 * 359.72831 * 6 5 4 8 8 C 1.47390 * 128.57147 * 179.97438 * 7 6 5 9 9 O 1.21601 * 120.00687 * 180.02562 * 8 7 6 10 10 N 1.34783 * 119.99746 * 0.03804 * 8 7 6 11 11 C 1.46498 * 120.00004 * 180.02562 * 10 8 7 12 12 H 1.08991 * 110.73177 * 34.30092 * 11 10 8 13 13 C 1.54351 * 110.82041 * 270.89554 * 11 10 8 14 14 C 1.51686 * 105.01651 * 215.57162 * 13 11 10 15 15 C 1.38495 * 130.30476 * 197.10126 * 14 13 11 16 16 C 1.38099 * 120.21469 * 179.80074 * 15 14 13 17 17 C 1.38262 * 119.93081 * 359.97438 * 16 15 14 18 18 C 1.38095 * 119.93539 * 0.02562 * 17 16 15 19 19 C 1.38211 * 109.84140 * 16.91628 * 14 13 11 20 20 C 1.51379 * 109.75895 * 0.16235 * 19 14 13 21 21 H 1.09001 * 110.38359 * 101.77519 * 20 19 14 22 22 N 1.46497 * 110.30224 * 223.88889 * 20 19 14 23 23 C 1.36940 * 119.99782 * 270.74579 * 22 20 19 24 24 H 1.07999 * 120.00221 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99884 * 180.02562 * 23 22 20 26 26 N 1.31614 * 119.99881 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99928 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47383 * 59.99598 * 27 25 23 29 29 H 1.48496 * 109.47107 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46908 * 299.99677 * 27 25 23 31 31 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 34 34 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 35 35 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 36 36 H 1.07999 * 126.82510 * 179.71362 * 6 5 4 37 37 H 0.97003 * 119.99795 * 0.02562 * 10 8 7 38 38 H 1.08994 * 110.30221 * 334.34414 * 13 11 10 39 39 H 1.08991 * 110.30278 * 96.50529 * 13 11 10 40 40 H 1.07996 * 119.89282 * 359.80167 * 15 14 13 41 41 H 1.08003 * 120.03831 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.03041 * 180.02562 * 17 16 15 43 43 H 1.08004 * 119.88964 * 179.97438 * 18 17 16 44 44 H 0.96996 * 120.00271 * 90.74260 * 22 20 19 45 45 H 0.97005 * 119.99924 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3006 2.1622 -1.0338 5 8 2.6845 3.2626 -0.7209 6 6 2.7471 3.4405 0.6006 7 6 2.3298 2.2620 1.1696 8 6 2.2102 1.9234 2.5991 9 8 1.8203 0.8209 2.9323 10 7 2.5327 2.8360 3.5370 11 6 2.4143 2.4994 4.9579 12 1 2.6529 1.4494 5.1268 13 6 1.0025 2.8330 5.4850 14 6 1.2172 3.3107 6.9085 15 6 0.3190 3.4419 7.9545 16 6 0.7470 3.9009 9.1847 17 6 2.0764 4.2302 9.3737 18 6 2.9735 4.1000 8.3319 19 6 2.5460 3.6404 7.0974 20 6 3.3172 3.4119 5.8149 21 1 3.4926 4.3584 5.3036 22 7 4.5902 2.7450 6.0993 23 6 5.7064 3.4890 6.3746 24 1 5.6481 4.5674 6.3825 25 6 6.9128 2.8572 6.6435 26 7 6.9837 1.5430 6.6344 27 14 8.4352 3.8721 7.0198 28 1 8.1899 4.7047 8.2247 29 1 9.5847 2.9660 7.2705 30 1 8.7413 4.7525 5.8637 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5137 0.8901 35 1 1.8934 -0.5139 -0.8900 36 1 3.0632 4.3335 1.1193 37 1 2.8432 3.7158 3.2712 38 1 0.5521 3.6240 4.8854 39 1 0.3738 1.9427 5.4719 40 1 -0.7195 3.1844 7.8077 41 1 0.0442 4.0017 9.9985 42 1 2.4130 4.5889 10.3352 43 1 4.0117 4.3579 8.4802 44 1 4.6425 1.7765 6.0927 45 1 7.8268 1.1014 6.8220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960301361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:42 Heat of formation + Delta-G solvation = 41.646125 kcal Electronic energy + Delta-G solvation = -29210.848044 eV Core-core repulsion = 25195.741611 eV Total energy + Delta-G solvation = -4015.106433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.96065 -41.45033 -40.18457 -37.52466 -36.22799 -35.71944 -34.44645 -32.98784 -32.79804 -32.24625 -31.22763 -29.13456 -27.63857 -26.15877 -25.18659 -24.86582 -23.27690 -22.08710 -21.89159 -21.61035 -21.27833 -19.41443 -19.10002 -18.73631 -17.71072 -17.43755 -17.09974 -16.59487 -16.15355 -16.08143 -15.88585 -15.48810 -15.31909 -15.13142 -15.03243 -14.68719 -14.24125 -14.19399 -13.83348 -13.78108 -13.65204 -13.44248 -13.28598 -12.79258 -12.73495 -12.67949 -12.52340 -12.24829 -12.22060 -12.00323 -11.92367 -11.79255 -11.57293 -11.24777 -11.00306 -10.97062 -10.79951 -10.16552 -9.58870 -9.36914 -9.04924 -7.92589 -5.22271 0.07495 0.55183 0.62486 0.72190 1.48512 1.50141 1.56180 1.81655 2.14134 2.25995 2.56253 2.96218 2.96653 3.27819 3.39292 3.47243 3.72187 3.80128 3.94073 4.09139 4.14993 4.16952 4.22253 4.31032 4.31470 4.35707 4.37664 4.41716 4.59028 4.68861 4.80363 4.84121 4.87551 4.94691 4.97457 4.98105 5.13655 5.22711 5.25071 5.33276 5.43925 5.51797 5.67089 5.74827 5.91164 6.22873 6.27897 6.45717 7.12100 7.19183 7.33310 8.03630 8.28391 9.30250 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.003691 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.828563 B = 7583.285079 C = 9817.403600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 C 0.060 3.940 4 N -0.377 5.377 5 O 0.098 5.902 6 C 0.031 3.969 7 C -0.279 4.279 8 C 0.598 3.402 9 O -0.564 6.564 10 N -0.693 5.693 11 C 0.152 3.848 12 H 0.071 0.929 13 C -0.074 4.074 14 C -0.108 4.108 15 C -0.114 4.114 16 C -0.123 4.123 17 C -0.133 4.133 18 C -0.106 4.106 19 C -0.118 4.118 20 C 0.207 3.793 21 H 0.080 0.920 22 N -0.722 5.722 23 C -0.231 4.231 24 H 0.081 0.919 25 C -0.070 4.070 26 N -0.969 5.969 27 Si 0.966 3.034 28 H -0.279 1.279 29 H -0.303 1.303 30 H -0.275 1.275 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.274 0.726 37 H 0.414 0.586 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.135 0.865 43 H 0.100 0.900 44 H 0.371 0.629 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.916 6.931 -7.846 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.089 4.089 3 C -0.102 4.102 4 N -0.085 5.085 5 O 0.040 5.960 6 C -0.051 4.051 7 C -0.287 4.287 8 C 0.385 3.615 9 O -0.444 6.444 10 N -0.344 5.344 11 C 0.046 3.954 12 H 0.089 0.911 13 C -0.112 4.112 14 C -0.109 4.109 15 C -0.132 4.132 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.125 4.125 19 C -0.121 4.121 20 C 0.098 3.902 21 H 0.097 0.903 22 N -0.360 5.360 23 C -0.362 4.362 24 H 0.099 0.901 25 C -0.262 4.262 26 N -0.619 5.619 27 Si 0.795 3.205 28 H -0.205 1.205 29 H -0.230 1.230 30 H -0.201 1.201 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.289 0.711 37 H 0.252 0.748 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.160 0.840 41 H 0.168 0.832 42 H 0.153 0.847 43 H 0.118 0.882 44 H 0.202 0.798 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.074 6.147 -8.940 19.393 hybrid contribution 1.677 0.058 1.289 2.115 sum -14.398 6.205 -7.651 17.445 Atomic orbital electron populations 1.21597 0.92563 1.03323 1.01623 1.20079 0.97651 0.87046 1.04088 1.25131 0.98956 0.99487 0.86664 1.73667 1.17695 0.93259 1.23865 1.84550 1.61740 1.25847 1.23855 1.27239 0.94460 1.00315 0.83051 1.22229 1.15046 0.96872 0.94528 1.17018 0.76710 0.83980 0.83781 1.90769 1.48088 1.23061 1.82490 1.45513 1.67029 1.16949 1.04881 1.21629 0.95028 0.99163 0.79570 0.91122 1.21323 0.96071 1.01970 0.91846 1.20686 0.93847 1.00327 0.96035 1.20868 0.99900 1.00325 0.92117 1.21308 0.95740 0.99333 0.97674 1.21299 0.93980 1.01081 0.98738 1.20747 0.99362 0.99424 0.92951 1.21492 0.95371 0.98439 0.96810 1.20110 0.84519 0.95139 0.90468 0.90253 1.42553 1.04595 1.05298 1.83601 1.19498 0.87698 0.91005 1.38046 0.90121 1.25475 1.00755 0.96324 1.03651 1.69825 1.25823 1.08538 1.57751 0.85332 0.79331 0.77450 0.78374 1.20500 1.22966 1.20060 0.92260 0.90015 0.93398 0.89822 0.89038 0.71050 0.74811 0.87800 0.90303 0.84012 0.83192 0.84726 0.88224 0.79756 0.94265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.90 71.98 0.71 -1.95 16 2 C -0.05 -1.19 6.20 29.85 0.18 -1.00 16 3 C 0.06 1.54 6.84 45.16 0.31 1.85 16 4 N -0.38 -9.36 12.01 -44.76 -0.54 -9.90 16 5 O 0.10 1.97 11.06 76.97 0.85 2.82 16 6 C 0.03 0.50 11.85 67.61 0.80 1.30 16 7 C -0.28 -6.71 6.47 -18.75 -0.12 -6.83 16 8 C 0.60 17.33 7.81 86.65 0.68 18.01 16 9 O -0.56 -20.51 15.38 -4.03 -0.06 -20.58 16 10 N -0.69 -17.82 5.15 -441.51 -2.27 -20.09 16 11 C 0.15 4.80 3.07 45.91 0.14 4.94 16 12 H 0.07 2.77 7.30 -2.39 -0.02 2.75 16 13 C -0.07 -1.93 6.52 30.62 0.20 -1.73 16 14 C -0.11 -3.16 6.15 -19.49 -0.12 -3.28 16 15 C -0.11 -2.85 10.04 22.30 0.22 -2.63 16 16 C -0.12 -2.98 10.05 22.24 0.22 -2.76 16 17 C -0.13 -3.83 10.05 22.24 0.22 -3.61 16 18 C -0.11 -3.81 10.00 22.30 0.22 -3.59 16 19 C -0.12 -4.12 5.79 -19.59 -0.11 -4.23 16 20 C 0.21 7.45 3.23 44.92 0.15 7.59 16 21 H 0.08 2.64 7.73 -2.39 -0.02 2.62 16 22 N -0.72 -34.11 5.14 -323.29 -1.66 -35.77 16 23 C -0.23 -11.86 9.69 84.03 0.81 -11.05 16 24 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 25 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 26 N -0.97 -58.37 13.06 21.65 0.28 -58.09 16 27 Si 0.97 44.46 29.55 68.60 2.03 46.48 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 29 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 30 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 2.27 7.11 -2.39 -0.02 2.26 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.27 1.33 7.68 -2.91 -0.02 1.30 16 37 H 0.41 7.78 7.58 -92.71 -0.70 7.08 16 38 H 0.10 2.21 8.08 -2.39 -0.02 2.19 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 43 H 0.10 4.03 7.79 -2.91 -0.02 4.01 16 44 H 0.37 19.86 7.61 -92.71 -0.71 19.16 16 45 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -72.36 383.71 3.25 -69.10 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.37 Total: 38.35 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 4.99 Total: -12.34 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -4.19 Total: -123.85 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.79 Total: -17.76 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -72.36 3.25 -69.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960301361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.751 kcal (2) G-P(sol) polarization free energy of solvation -72.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds