Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.35320 * 126.66580 * 89.99904 * 3 2 1 5 5 C 1.42269 * 103.92425 * 180.02562 * 4 3 2 6 6 C 1.48329 * 126.93952 * 179.97438 * 5 4 3 7 7 O 1.21492 * 119.99926 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99902 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99976 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.73176 * 31.58959 * 9 8 6 11 11 C 1.54354 * 110.82043 * 267.96898 * 9 8 6 12 12 C 1.51365 * 105.16676 * 215.42723 * 11 9 8 13 13 C 1.38499 * 130.38846 * 197.19051 * 12 11 9 14 14 C 1.38105 * 120.21960 * 179.97438 * 13 12 11 15 15 C 1.38250 * 119.93120 * 0.02562 * 14 13 12 16 16 C 1.38108 * 119.93606 * 0.03451 * 15 14 13 17 17 C 1.38214 * 109.76413 * 17.18875 * 12 11 9 18 18 C 1.51367 * 109.75695 * 359.97438 * 17 12 11 19 19 H 1.09005 * 110.30439 * 101.73742 * 18 17 12 20 20 N 1.46498 * 110.38375 * 223.84620 * 18 17 12 21 21 C 1.36937 * 119.99996 * 270.79340 * 20 18 17 22 22 H 1.07997 * 120.00195 * 0.02562 * 21 20 18 23 23 C 1.38818 * 119.99905 * 180.02562 * 21 20 18 24 24 N 1.31617 * 120.00150 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00162 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46532 * 59.99866 * 25 23 21 27 27 H 1.48489 * 109.47213 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46945 * 300.00414 * 25 23 21 29 29 N 1.30994 * 106.12078 * 359.97438 * 5 4 3 30 30 O 1.20906 * 111.43985 * 359.70325 * 29 5 4 31 31 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 36 36 H 1.08000 * 128.03460 * 0.02562 * 4 3 2 37 37 H 0.97005 * 119.99923 * 359.97438 * 8 6 5 38 38 H 1.08992 * 110.30330 * 334.34919 * 11 9 8 39 39 H 1.09000 * 110.30150 * 96.50755 * 11 9 8 40 40 H 1.08004 * 119.89051 * 359.97438 * 13 12 11 41 41 H 1.07999 * 120.03533 * 179.97438 * 14 13 12 42 42 H 1.08000 * 120.03584 * 179.97438 * 15 14 13 43 43 H 1.08001 * 119.89287 * 180.02562 * 16 15 14 44 44 H 0.97000 * 120.00460 * 90.79907 * 20 18 17 45 45 H 0.96997 * 120.00107 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7386 3.4198 0.5355 6 6 3.1647 4.6272 1.2843 7 8 3.1619 4.6211 2.4992 8 7 3.5541 5.7315 0.6169 9 6 3.9745 6.9242 1.3564 10 1 4.4430 6.6475 2.3009 11 6 2.7807 7.8746 1.5889 12 6 3.3604 9.2695 1.4928 13 6 2.8494 10.4850 1.9168 14 6 3.5678 11.6479 1.7197 15 6 4.8010 11.5996 1.0966 16 6 5.3117 10.3888 0.6719 17 6 4.5933 9.2214 0.8699 18 6 4.9268 7.7906 0.5054 19 1 4.7467 7.6188 -0.5559 20 7 6.3216 7.4911 0.8384 21 6 7.3096 7.7198 -0.0819 22 1 7.0605 8.1214 -1.0530 23 6 8.6312 7.4355 0.2335 24 7 8.9347 6.9456 1.4168 25 14 9.9789 7.7469 -1.0220 26 1 9.9976 9.1877 -1.3809 27 1 11.2920 7.3641 -0.4439 28 1 9.7182 6.9369 -2.2391 29 7 2.6885 3.2773 -0.7657 30 8 2.3050 2.1732 -1.0750 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 2.2071 1.9138 2.1272 37 1 3.5561 5.7365 -0.3532 38 1 2.0233 7.7259 0.8193 39 1 2.3533 7.7100 2.5781 40 1 1.8859 10.5235 2.4033 41 1 3.1663 12.5941 2.0512 42 1 5.3640 12.5080 0.9413 43 1 6.2753 10.3518 0.1856 44 1 6.5454 7.1307 1.7107 45 1 9.8582 6.7473 1.6373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960328557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = 63.170406 kcal Electronic energy + Delta-G solvation = -28781.214257 eV Core-core repulsion = 24767.041186 eV Total energy + Delta-G solvation = -4014.173070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.19624 -40.18145 -38.99052 -36.17736 -35.21263 -34.12608 -33.88731 -32.68761 -31.20110 -30.39220 -29.71286 -27.97053 -26.07570 -24.99504 -24.33845 -23.12324 -22.68673 -21.74609 -20.58877 -20.37616 -19.71602 -17.98064 -17.70479 -17.26497 -16.90243 -16.05944 -15.69913 -15.26465 -14.93127 -14.84696 -14.63159 -14.44504 -14.16229 -13.95500 -13.67291 -13.31487 -13.16559 -12.99593 -12.89664 -12.54169 -12.46732 -12.23046 -12.10221 -11.82235 -11.75044 -11.34212 -11.09494 -10.95099 -10.82144 -10.62754 -10.53516 -10.40926 -10.20886 -10.15904 -9.78222 -9.63242 -9.10874 -8.88408 -8.31892 -8.09430 -7.09171 -5.83306 -3.14103 1.04071 1.55041 1.79626 1.89278 2.74664 3.01580 3.23285 3.39697 3.44550 3.45556 3.90338 4.21830 4.26903 4.53106 4.62119 4.75447 4.76078 4.85889 4.95262 5.05409 5.16529 5.32204 5.34559 5.39873 5.40493 5.42058 5.51327 5.54529 5.56572 5.70117 5.71280 5.78461 5.86845 5.93277 6.07891 6.15334 6.23270 6.31085 6.46085 6.62427 6.69686 6.88680 7.01061 7.23695 7.47822 7.50875 7.62344 7.91499 8.19123 8.32551 9.44569 9.96916 10.32777 11.38266 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.003284 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.755648 B = 8524.504461 C =10878.671377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.042 4.042 3 C -0.036 4.036 4 C -0.180 4.180 5 C -0.019 4.019 6 C 0.600 3.400 7 O -0.523 6.523 8 N -0.693 5.693 9 C 0.139 3.861 10 H 0.108 0.892 11 C -0.087 4.087 12 C -0.106 4.106 13 C -0.115 4.115 14 C -0.131 4.131 15 C -0.129 4.129 16 C -0.079 4.079 17 C -0.091 4.091 18 C 0.207 3.793 19 H 0.070 0.930 20 N -0.710 5.710 21 C -0.247 4.247 22 H 0.071 0.929 23 C -0.006 4.006 24 N -0.926 5.926 25 Si 0.906 3.094 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 N -0.330 5.330 30 O 0.122 5.878 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.180 0.820 37 H 0.407 0.593 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.388 0.612 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.442 -7.702 -2.207 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.099 4.099 4 C -0.202 4.202 5 C -0.179 4.179 6 C 0.383 3.617 7 O -0.397 6.397 8 N -0.343 5.343 9 C 0.034 3.966 10 H 0.126 0.874 11 C -0.125 4.125 12 C -0.107 4.107 13 C -0.133 4.133 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.097 4.097 17 C -0.095 4.095 18 C 0.095 3.905 19 H 0.087 0.913 20 N -0.350 5.350 21 C -0.378 4.378 22 H 0.089 0.911 23 C -0.203 4.203 24 N -0.573 5.573 25 Si 0.737 3.263 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.212 1.212 29 N -0.030 5.030 30 O 0.046 5.954 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.197 0.803 37 H 0.243 0.757 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.146 0.854 44 H 0.222 0.778 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.957 -6.830 -2.453 19.368 hybrid contribution 0.916 -0.088 -0.014 0.920 sum -17.041 -6.918 -2.466 18.556 Atomic orbital electron populations 1.21811 0.93401 1.02786 1.02969 1.20141 0.96660 0.86129 1.05047 1.24506 1.02576 0.97269 0.85536 1.22425 1.04659 0.91656 1.01499 1.23548 1.06126 0.98099 0.90092 1.16834 0.77509 0.80958 0.86387 1.90796 1.53886 1.82620 1.12423 1.45728 1.65394 1.12496 1.10677 1.22038 0.94158 0.83398 0.97045 0.87391 1.21338 0.97706 0.90941 1.02537 1.20409 0.96126 0.94136 1.00011 1.20454 0.99760 0.91605 1.01491 1.20876 0.95617 0.97448 1.00996 1.21048 0.96096 0.97653 0.99883 1.20785 0.99624 0.90862 0.98442 1.21636 0.93434 0.97287 0.97135 1.19923 0.86171 0.87455 0.96923 0.91291 1.42395 0.99303 1.76099 1.17165 1.19147 0.86746 1.36711 0.95171 0.91069 1.24761 0.97284 1.01397 0.96874 1.69656 1.18256 1.49113 1.20305 0.86290 0.81518 0.77950 0.80542 1.21135 1.21647 1.21170 1.74197 1.13926 0.99230 1.15659 1.84776 1.59968 1.17169 1.33463 0.91986 0.91965 0.91178 0.88253 0.89078 0.80267 0.75748 0.90255 0.90553 0.87083 0.86728 0.86579 0.85411 0.77776 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 37.16 0.37 -0.34 16 2 C -0.04 -0.22 6.50 -27.89 -0.18 -0.41 16 3 C -0.04 -0.34 6.73 -35.35 -0.24 -0.58 16 4 C -0.18 -2.10 10.92 -39.07 -0.43 -2.53 16 5 C -0.02 -0.28 7.19 -82.52 -0.59 -0.88 16 6 C 0.60 10.20 7.85 -12.11 -0.10 10.11 16 7 O -0.52 -10.16 16.60 5.37 0.09 -10.07 16 8 N -0.69 -11.35 5.14 -53.23 -0.27 -11.63 16 9 C 0.14 2.46 3.13 -66.53 -0.21 2.25 16 10 H 0.11 2.17 7.22 -51.93 -0.37 1.80 16 11 C -0.09 -1.33 6.49 -26.85 -0.17 -1.51 16 12 C -0.11 -1.76 6.14 -104.21 -0.64 -2.40 16 13 C -0.11 -1.72 10.04 -39.53 -0.40 -2.12 16 14 C -0.13 -1.91 10.05 -39.63 -0.40 -2.31 16 15 C -0.13 -2.06 10.05 -39.62 -0.40 -2.46 16 16 C -0.08 -1.49 10.00 -39.53 -0.40 -1.88 16 17 C -0.09 -1.73 5.79 -104.21 -0.60 -2.33 16 18 C 0.21 4.10 3.23 -68.06 -0.22 3.88 16 19 H 0.07 1.35 7.75 -51.93 -0.40 0.95 16 20 N -0.71 -17.40 5.14 -53.55 -0.28 -17.68 16 21 C -0.25 -6.60 9.70 -15.06 -0.15 -6.75 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 24 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 25 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 N -0.33 -4.66 11.84 33.30 0.39 -4.26 16 30 O 0.12 1.45 11.18 17.24 0.19 1.64 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.41 6.18 8.19 -40.82 -0.33 5.85 16 38 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.13 2.61 7.79 -52.49 -0.41 2.20 16 44 H 0.39 10.40 7.61 -40.82 -0.31 10.09 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -32.25 386.87 -9.21 -41.46 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -6.02 Total: 15.19 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -4.84 Total: -10.53 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.57 Total: -60.56 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.28 Total: -8.43 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.25 -9.21 -41.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960328557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.630 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds