Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.35320 * 126.66580 * 89.99904 * 3 2 1 5 5 C 1.42269 * 103.92425 * 180.02562 * 4 3 2 6 6 C 1.48329 * 126.93952 * 179.97438 * 5 4 3 7 7 O 1.21492 * 119.99926 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99902 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99976 * 179.97438 * 8 6 5 10 10 H 1.09003 * 110.73176 * 31.58959 * 9 8 6 11 11 C 1.54354 * 110.82043 * 267.96898 * 9 8 6 12 12 C 1.51365 * 105.16676 * 215.42723 * 11 9 8 13 13 C 1.38499 * 130.38846 * 197.19051 * 12 11 9 14 14 C 1.38105 * 120.21960 * 179.97438 * 13 12 11 15 15 C 1.38250 * 119.93120 * 0.02562 * 14 13 12 16 16 C 1.38108 * 119.93606 * 0.03451 * 15 14 13 17 17 C 1.38214 * 109.76413 * 17.18875 * 12 11 9 18 18 C 1.51367 * 109.75695 * 359.97438 * 17 12 11 19 19 H 1.09005 * 110.30439 * 101.73742 * 18 17 12 20 20 N 1.46498 * 110.38375 * 223.84620 * 18 17 12 21 21 C 1.36937 * 119.99996 * 270.79340 * 20 18 17 22 22 H 1.07997 * 120.00195 * 0.02562 * 21 20 18 23 23 C 1.38818 * 119.99905 * 180.02562 * 21 20 18 24 24 N 1.31617 * 120.00150 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00162 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46532 * 59.99866 * 25 23 21 27 27 H 1.48489 * 109.47213 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46945 * 300.00414 * 25 23 21 29 29 N 1.30994 * 106.12078 * 359.97438 * 5 4 3 30 30 O 1.20906 * 111.43985 * 359.70325 * 29 5 4 31 31 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 32 32 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 33 33 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 35 35 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 36 36 H 1.08000 * 128.03460 * 0.02562 * 4 3 2 37 37 H 0.97005 * 119.99923 * 359.97438 * 8 6 5 38 38 H 1.08992 * 110.30330 * 334.34919 * 11 9 8 39 39 H 1.09000 * 110.30150 * 96.50755 * 11 9 8 40 40 H 1.08004 * 119.89051 * 359.97438 * 13 12 11 41 41 H 1.07999 * 120.03533 * 179.97438 * 14 13 12 42 42 H 1.08000 * 120.03584 * 179.97438 * 15 14 13 43 43 H 1.08001 * 119.89287 * 180.02562 * 16 15 14 44 44 H 0.97000 * 120.00460 * 90.79907 * 20 18 17 45 45 H 0.96997 * 120.00107 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7386 3.4198 0.5355 6 6 3.1647 4.6272 1.2843 7 8 3.1619 4.6211 2.4992 8 7 3.5541 5.7315 0.6169 9 6 3.9745 6.9242 1.3564 10 1 4.4430 6.6475 2.3009 11 6 2.7807 7.8746 1.5889 12 6 3.3604 9.2695 1.4928 13 6 2.8494 10.4850 1.9168 14 6 3.5678 11.6479 1.7197 15 6 4.8010 11.5996 1.0966 16 6 5.3117 10.3888 0.6719 17 6 4.5933 9.2214 0.8699 18 6 4.9268 7.7906 0.5054 19 1 4.7467 7.6188 -0.5559 20 7 6.3216 7.4911 0.8384 21 6 7.3096 7.7198 -0.0819 22 1 7.0605 8.1214 -1.0530 23 6 8.6312 7.4355 0.2335 24 7 8.9347 6.9456 1.4168 25 14 9.9789 7.7469 -1.0220 26 1 9.9976 9.1877 -1.3809 27 1 11.2920 7.3641 -0.4439 28 1 9.7182 6.9369 -2.2391 29 7 2.6885 3.2773 -0.7657 30 8 2.3050 2.1732 -1.0750 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 2.2071 1.9138 2.1272 37 1 3.5561 5.7365 -0.3532 38 1 2.0233 7.7259 0.8193 39 1 2.3533 7.7100 2.5781 40 1 1.8859 10.5235 2.4033 41 1 3.1663 12.5941 2.0512 42 1 5.3640 12.5080 0.9413 43 1 6.2753 10.3518 0.1856 44 1 6.5454 7.1307 1.7107 45 1 9.8582 6.7473 1.6373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960328557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = 43.162351 kcal Electronic energy + Delta-G solvation = -28782.081871 eV Core-core repulsion = 24767.041186 eV Total energy + Delta-G solvation = -4015.040684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.20230 -41.57599 -40.34455 -37.61024 -35.92362 -35.78455 -35.08121 -34.03540 -32.92993 -31.28528 -31.14667 -29.30572 -27.72007 -26.19356 -25.05481 -24.89490 -23.73437 -22.97445 -21.85699 -21.83720 -21.00246 -19.35636 -18.96181 -18.55498 -18.09661 -17.49960 -17.15193 -16.65110 -16.26174 -16.09993 -15.68632 -15.60105 -15.41964 -15.20560 -15.08506 -14.75768 -14.36925 -14.26404 -13.92697 -13.85984 -13.57082 -13.46392 -13.36452 -12.89825 -12.83688 -12.78189 -12.40045 -12.31677 -12.26632 -12.09491 -11.86705 -11.84167 -11.63243 -11.59945 -11.58228 -11.05156 -10.48737 -10.35190 -9.63648 -9.42752 -9.11908 -7.98292 -5.28881 -0.01629 0.49731 0.57620 0.62617 1.43209 1.45847 1.51911 1.67973 1.95627 2.02031 2.50980 2.79539 2.91309 3.30660 3.36883 3.47337 3.64167 3.88294 3.97101 4.01422 4.07127 4.10241 4.17917 4.26928 4.31556 4.33057 4.36877 4.45772 4.60964 4.70751 4.72873 4.79481 4.84126 4.91488 4.97492 5.08663 5.15691 5.16257 5.23824 5.31188 5.42011 5.44161 5.61675 5.69949 5.86135 6.15785 6.19546 6.22550 6.80769 6.99125 7.26997 7.95596 8.21885 9.24523 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.003284 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.755648 B = 8524.504461 C =10878.671377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.041 4.041 3 C -0.013 4.013 4 C -0.194 4.194 5 C -0.046 4.046 6 C 0.598 3.402 7 O -0.554 6.554 8 N -0.689 5.689 9 C 0.147 3.853 10 H 0.079 0.921 11 C -0.074 4.074 12 C -0.108 4.108 13 C -0.111 4.111 14 C -0.120 4.120 15 C -0.130 4.130 16 C -0.106 4.106 17 C -0.119 4.119 18 C 0.206 3.794 19 H 0.067 0.933 20 N -0.722 5.722 21 C -0.237 4.237 22 H 0.076 0.924 23 C -0.070 4.070 24 N -0.968 5.968 25 Si 0.970 3.030 26 H -0.276 1.276 27 H -0.297 1.297 28 H -0.278 1.278 29 N -0.348 5.348 30 O 0.129 5.871 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.109 0.891 36 H 0.193 0.807 37 H 0.412 0.588 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.372 0.628 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.991 -7.615 -2.813 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.078 4.078 3 C -0.076 4.076 4 C -0.216 4.216 5 C -0.204 4.204 6 C 0.383 3.617 7 O -0.431 6.431 8 N -0.339 5.339 9 C 0.041 3.959 10 H 0.097 0.903 11 C -0.112 4.112 12 C -0.109 4.109 13 C -0.129 4.129 14 C -0.138 4.138 15 C -0.148 4.148 16 C -0.125 4.125 17 C -0.123 4.123 18 C 0.096 3.904 19 H 0.085 0.915 20 N -0.361 5.361 21 C -0.368 4.368 22 H 0.094 0.906 23 C -0.263 4.263 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.202 1.202 27 H -0.223 1.223 28 H -0.204 1.204 29 N -0.047 5.047 30 O 0.051 5.949 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.210 0.790 37 H 0.249 0.751 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.163 0.837 41 H 0.172 0.828 42 H 0.156 0.844 43 H 0.117 0.883 44 H 0.204 0.796 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.556 -6.701 -3.108 21.843 hybrid contribution 1.561 -0.122 0.147 1.573 sum -18.995 -6.823 -2.961 20.400 Atomic orbital electron populations 1.21819 0.92571 1.04017 1.02417 1.20451 0.97148 0.83295 1.06947 1.25249 1.00124 0.98248 0.83974 1.22662 1.05328 0.90838 1.02797 1.23409 1.08013 0.98267 0.90683 1.17148 0.76830 0.81495 0.86222 1.90764 1.55331 1.83262 1.13708 1.45687 1.65114 1.12286 1.10846 1.21789 0.94820 0.83978 0.95335 0.90300 1.21253 0.96742 0.89522 1.03717 1.20575 0.95268 0.95412 0.99633 1.20881 1.00984 0.90715 1.00350 1.21338 0.94419 0.99031 0.98985 1.21314 0.97034 0.97141 0.99305 1.20750 0.99072 0.92451 1.00190 1.21430 0.95226 0.96299 0.99309 1.20072 0.84207 0.88979 0.97134 0.91487 1.42511 1.01059 1.76415 1.16069 1.19478 0.87380 1.34497 0.95443 0.90575 1.25535 0.99561 1.02456 0.98720 1.69826 1.18029 1.51575 1.22372 0.85268 0.78370 0.78121 0.78355 1.20218 1.22333 1.20404 1.74190 1.14661 1.00420 1.15419 1.84744 1.59225 1.16723 1.34216 0.92595 0.92522 0.89065 0.86244 0.87264 0.79001 0.75120 0.88272 0.89572 0.83660 0.82765 0.84406 0.88286 0.79623 0.94043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 71.98 0.71 -0.29 16 2 C -0.04 -0.32 6.50 29.85 0.19 -0.13 16 3 C -0.01 -0.22 6.73 25.01 0.17 -0.06 16 4 C -0.19 -4.40 10.92 22.60 0.25 -4.16 16 5 C -0.05 -1.38 7.19 42.96 0.31 -1.07 16 6 C 0.60 21.06 7.85 86.93 0.68 21.74 16 7 O -0.55 -22.34 16.60 -3.69 -0.06 -22.40 16 8 N -0.69 -23.41 5.14 -440.64 -2.26 -25.67 16 9 C 0.15 5.37 3.13 45.90 0.14 5.51 16 10 H 0.08 3.38 7.22 -2.39 -0.02 3.36 16 11 C -0.07 -2.22 6.49 30.52 0.20 -2.02 16 12 C -0.11 -3.46 6.14 -19.60 -0.12 -3.58 16 13 C -0.11 -2.97 10.04 22.30 0.22 -2.74 16 14 C -0.12 -3.06 10.05 22.24 0.22 -2.83 16 15 C -0.13 -3.95 10.05 22.24 0.22 -3.72 16 16 C -0.11 -4.08 10.00 22.30 0.22 -3.85 16 17 C -0.12 -4.60 5.79 -19.60 -0.11 -4.71 16 18 C 0.21 8.49 3.23 44.91 0.14 8.64 16 19 H 0.07 2.74 7.75 -2.38 -0.02 2.72 16 20 N -0.72 -37.27 5.14 -323.33 -1.66 -38.94 16 21 C -0.24 -13.13 9.70 84.03 0.81 -12.32 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 23 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 24 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 25 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 29 N -0.35 -9.83 11.84 -49.50 -0.59 -10.41 16 30 O 0.13 2.93 11.18 71.87 0.80 3.73 16 31 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 34 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.19 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.41 12.99 8.19 -92.70 -0.76 12.23 16 38 H 0.10 2.59 8.08 -2.39 -0.02 2.57 16 39 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 41 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 42 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 43 H 0.10 4.27 7.79 -2.91 -0.02 4.25 16 44 H 0.37 21.26 7.61 -92.71 -0.71 20.55 16 45 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -73.65 386.87 2.86 -70.79 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -0.43 Total: 43.59 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 4.74 Total: -9.19 kcal Atomic # 7 Polarization: -131.00 SS G_CDS: -4.23 Total: -135.23 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.74 Total: -18.67 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -73.65 2.86 -70.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960328557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.953 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds