Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39728 * 119.59171 * 82.45819 * 3 2 1 5 5 C 1.37966 * 119.19913 * 179.74291 * 4 3 2 6 6 C 1.40236 * 118.40772 * 0.25354 * 5 4 3 7 7 C 1.47663 * 120.44567 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00302 * 198.38364 * 7 6 5 9 9 N 1.34779 * 120.00007 * 18.38229 * 7 6 5 10 10 C 1.47477 * 125.66295 * 5.59360 * 9 7 6 11 11 C 1.55241 * 104.79352 * 155.93431 * 10 9 7 12 12 C 1.54495 * 101.44146 * 36.64640 * 11 10 9 13 13 C 1.47178 * 125.66044 * 185.90198 * 9 7 6 14 14 C 1.52516 * 110.10227 * 206.80546 * 12 11 10 15 15 N 1.47300 * 108.39940 * 186.95585 * 14 12 11 16 16 C 1.36940 * 121.07274 * 229.42550 * 15 14 12 17 17 H 1.08003 * 119.99690 * 26.22861 * 16 15 14 18 18 C 1.38808 * 120.00209 * 206.24219 * 16 15 14 19 19 N 1.31617 * 120.00060 * 15.58598 * 18 16 15 20 20 Si 1.86795 * 119.99823 * 195.58833 * 18 16 15 21 21 H 1.48498 * 109.47312 * 94.61537 * 20 18 16 22 22 H 1.48504 * 109.47048 * 214.61370 * 20 18 16 23 23 H 1.48495 * 109.47266 * 334.60924 * 20 18 16 24 24 C 1.47170 * 117.86673 * 49.39556 * 15 14 12 25 25 C 1.53275 * 108.55046 * 308.87257 * 24 15 14 26 26 O 1.42064 * 110.38366 * 83.76481 * 12 11 10 27 27 C 1.39667 * 119.11326 * 359.97438 * 6 5 4 28 28 N 1.31483 * 120.71273 * 0.02562 * 27 6 5 29 29 H 4.51262 * 14.17510 * 359.97438 * 4 2 1 30 30 H 1.08004 * 120.39619 * 0.02562 * 4 3 2 31 31 H 1.08003 * 120.79683 * 180.27246 * 5 4 3 32 32 H 1.08997 * 110.35531 * 274.88356 * 10 9 7 33 33 H 1.08999 * 110.35570 * 37.17304 * 10 9 7 34 34 H 1.09005 * 111.20420 * 278.55881 * 11 10 9 35 35 H 1.09002 * 110.91686 * 154.61222 * 11 10 9 36 36 H 1.09004 * 109.91221 * 300.84057 * 13 9 7 37 37 H 1.08996 * 109.91124 * 61.92308 * 13 9 7 38 38 H 1.09002 * 109.67832 * 306.68762 * 14 12 11 39 39 H 1.09004 * 109.67558 * 67.19364 * 14 12 11 40 40 H 0.97000 * 119.99981 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.61938 * 68.58873 * 24 15 14 42 42 H 1.08990 * 109.62707 * 189.14891 * 24 15 14 43 43 H 1.09006 * 109.50962 * 172.81165 * 25 24 15 44 44 H 1.08994 * 109.51372 * 292.91528 * 25 24 15 45 45 H 1.07995 * 119.64519 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2961 -0.1585 -1.2045 5 6 4.6757 -0.1513 -1.1959 6 6 5.3343 0.0113 0.0315 7 6 6.8096 0.0253 0.0929 8 8 7.3759 -0.1694 1.1510 9 7 7.5285 0.2537 -1.0241 10 6 6.9765 0.6179 -2.3423 11 6 8.1359 1.3517 -3.0685 12 6 9.3617 0.5503 -2.5765 13 6 8.9942 0.1750 -1.1322 14 6 10.6071 1.4304 -2.5996 15 7 11.7760 0.5902 -2.2873 16 6 12.6853 0.9696 -1.3363 17 1 12.3826 1.6200 -0.5289 18 6 13.9960 0.5186 -1.4100 19 7 14.4487 -0.0081 -2.5280 20 14 15.1171 0.6591 0.0774 21 1 15.0875 -0.6138 0.8416 22 1 16.5052 0.9337 -0.3731 23 1 14.6500 1.7691 0.9463 24 6 11.9351 -0.6705 -3.0298 25 6 10.6206 -1.4545 -2.9467 26 8 9.5429 -0.6139 -3.3703 27 6 4.5762 0.1600 1.1950 28 7 3.2624 0.1479 1.1466 29 1 -1.0499 -0.0005 -0.0001 30 1 2.7559 -0.2811 -2.1317 31 1 5.2351 -0.2678 -2.1124 32 1 6.6876 -0.2774 -2.8928 33 1 6.1218 1.2839 -2.2246 34 1 8.1996 2.3941 -2.7562 35 1 8.0277 1.2753 -4.1504 36 1 9.4559 0.8768 -0.4376 37 1 9.3287 -0.8388 -0.9126 38 1 10.7262 1.8720 -3.5890 39 1 10.5123 2.2201 -1.8542 40 1 15.3645 -0.3236 -2.5794 41 1 12.1671 -0.4543 -4.0726 42 1 12.7399 -1.2571 -2.5869 43 1 10.6767 -2.3290 -3.5951 44 1 10.4516 -1.7739 -1.9184 45 1 5.0746 0.2862 2.1448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972642203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = 69.341706 kcal Electronic energy + Delta-G solvation = -29512.176752 eV Core-core repulsion = 25498.271290 eV Total energy + Delta-G solvation = -4013.905462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.09990 -40.00298 -38.57452 -36.38260 -34.52251 -34.31219 -33.22055 -31.91348 -31.15693 -30.90287 -29.28563 -27.89141 -26.26570 -25.11143 -23.88279 -23.32782 -23.20841 -21.28014 -20.25596 -19.81516 -18.80309 -17.62455 -16.93740 -16.87720 -16.52495 -16.45449 -15.66531 -15.22108 -15.07089 -14.63365 -14.54098 -14.48171 -14.26455 -13.92779 -13.65777 -13.44576 -13.26031 -13.11512 -12.87444 -12.57399 -12.14031 -11.98584 -11.64147 -11.48199 -11.33324 -11.27051 -11.11060 -10.88956 -10.77477 -10.56179 -10.32141 -10.27937 -10.23879 -10.00787 -9.76641 -9.60018 -9.23092 -9.14208 -8.64932 -8.56046 -6.79716 -5.87213 -3.32061 0.01039 0.81936 2.20081 2.20744 2.82327 2.96273 3.34349 3.41857 3.42932 3.48697 3.64933 4.05308 4.18910 4.31210 4.37987 4.39918 4.57268 4.61881 4.68589 4.84390 4.99956 5.16859 5.22160 5.27252 5.32302 5.36250 5.45056 5.59041 5.64217 5.69840 5.80767 5.88143 5.90018 6.03519 6.09369 6.20519 6.27189 6.30850 6.32993 6.45856 6.62184 6.99316 7.05992 7.37307 7.47544 7.47714 7.68208 7.81242 8.03330 8.29236 9.07589 9.69560 10.25628 11.20442 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.002545 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.016658 B =10997.538565 C =11778.378177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.151 4.151 3 C 0.242 3.758 4 C -0.152 4.152 5 C -0.057 4.057 6 C -0.171 4.171 7 C 0.573 3.427 8 O -0.529 6.529 9 N -0.607 5.607 10 C 0.093 3.907 11 C -0.120 4.120 12 C 0.096 3.904 13 C 0.096 3.904 14 C 0.131 3.869 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.904 5.904 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.139 3.861 25 C 0.033 3.967 26 O -0.375 6.375 27 C 0.165 3.835 28 N -0.473 5.473 29 H 0.231 0.769 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.255 0.745 41 H 0.028 0.972 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.590 0.067 -2.211 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.151 4.151 3 C 0.107 3.893 4 C -0.172 4.172 5 C -0.083 4.083 6 C -0.176 4.176 7 C 0.361 3.639 8 O -0.407 6.407 9 N -0.340 5.340 10 C -0.030 4.030 11 C -0.158 4.158 12 C 0.054 3.946 13 C -0.026 4.026 14 C 0.004 3.996 15 N -0.317 5.317 16 C -0.382 4.382 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.203 1.203 24 C 0.013 3.987 25 C -0.044 4.044 26 O -0.294 6.294 27 C 0.005 3.995 28 N -0.181 5.181 29 H 0.247 0.753 30 H 0.164 0.836 31 H 0.180 0.820 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -23.669 -0.045 -0.975 23.689 hybrid contribution 1.196 -0.129 0.079 1.205 sum -22.473 -0.174 -0.896 22.492 Atomic orbital electron populations 1.24972 0.95639 0.96544 0.98092 1.19299 0.91048 1.02810 1.01993 1.16799 0.88217 0.94978 0.89335 1.22012 0.94417 1.01940 0.98836 1.22515 0.94399 0.92613 0.98726 1.21111 0.94730 1.06213 0.95552 1.17600 0.85735 0.77681 0.82920 1.90832 1.71823 1.49699 1.28316 1.48466 1.08441 1.67983 1.09145 1.22808 0.97410 0.99111 0.83637 1.22817 0.92432 0.98971 1.01584 1.22304 0.96088 0.87826 0.88402 1.22576 0.77946 1.03500 0.98542 1.21367 0.86481 0.92578 0.99198 1.44119 1.24715 1.18500 1.44375 1.19199 0.88825 1.28862 1.01303 0.91300 1.25041 0.96478 1.01273 0.96787 1.70006 1.15801 1.45102 1.23897 0.86222 0.79974 0.78050 0.82245 1.21347 1.21702 1.20289 1.21466 0.93751 0.87550 0.95901 1.23444 0.89043 0.93107 0.98845 1.87663 1.52885 1.34458 1.54429 1.22984 0.87842 0.90431 0.98205 1.67872 1.09643 1.12929 1.27652 0.75251 0.83607 0.82046 0.90338 0.90211 0.89027 0.88603 0.89841 0.90420 0.94963 0.91698 0.93495 0.95354 0.88369 0.89794 0.93706 0.80760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 19.25 29.55 0.57 -0.32 16 2 C -0.15 -1.45 13.43 -38.84 -0.52 -1.97 16 3 C 0.24 2.62 6.59 -84.91 -0.56 2.06 16 4 C -0.15 -1.31 9.77 -39.12 -0.38 -1.69 16 5 C -0.06 -0.53 8.21 -38.93 -0.32 -0.85 16 6 C -0.17 -2.06 5.78 -104.76 -0.61 -2.66 16 7 C 0.57 8.61 7.71 -12.41 -0.10 8.51 16 8 O -0.53 -9.90 16.85 5.29 0.09 -9.81 16 9 N -0.61 -8.59 3.33 -171.72 -0.57 -9.16 16 10 C 0.09 0.96 4.94 -2.32 -0.01 0.95 16 11 C -0.12 -1.40 6.22 -24.76 -0.15 -1.55 16 12 C 0.10 1.56 0.81 -89.73 -0.07 1.49 16 13 C 0.10 1.63 5.96 -3.32 -0.02 1.61 16 14 C 0.13 2.55 5.30 -3.85 -0.02 2.53 16 15 N -0.59 -14.15 2.97 -172.18 -0.51 -14.66 16 16 C -0.25 -6.69 9.67 -15.06 -0.15 -6.83 16 17 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 18 C 0.00 0.08 4.98 -17.43 -0.09 -0.01 16 19 N -0.90 -25.44 11.05 55.49 0.61 -24.83 16 20 Si 0.91 21.46 29.58 -169.99 -5.03 16.44 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.14 3.18 5.44 -3.53 -0.02 3.16 16 25 C 0.03 0.61 6.75 37.30 0.25 0.87 16 26 O -0.38 -6.60 10.26 -35.23 -0.36 -6.96 16 27 C 0.17 2.01 10.75 -17.17 -0.18 1.83 16 28 N -0.47 -5.90 10.27 -10.78 -0.11 -6.01 16 29 H 0.23 0.52 7.80 -54.09 -0.42 0.10 16 30 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.16 1.19 4.14 -52.48 -0.22 0.98 16 32 H 0.08 0.73 6.98 -51.93 -0.36 0.37 16 33 H 0.08 0.64 6.51 -51.93 -0.34 0.30 16 34 H 0.09 0.97 8.01 -51.93 -0.42 0.55 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.56 7.61 -51.93 -0.40 1.17 16 37 H 0.08 1.47 6.02 -51.93 -0.31 1.16 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 1.23 7.70 -51.93 -0.40 0.83 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 2.50 6.06 -51.93 -0.31 2.19 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.04 0.85 6.23 -51.93 -0.32 0.53 16 45 H 0.18 2.02 7.76 -52.49 -0.41 1.61 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -32.90 368.84 -8.27 -41.17 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.57 Total: 1.15 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -2.38 Total: 7.12 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.58 Total: -54.66 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.27 Total: -16.77 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.90 -8.27 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972642203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.511 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds