Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39728 * 119.59171 * 82.45819 * 3 2 1 5 5 C 1.37966 * 119.19913 * 179.74291 * 4 3 2 6 6 C 1.40236 * 118.40772 * 0.25354 * 5 4 3 7 7 C 1.47663 * 120.44567 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00302 * 198.38364 * 7 6 5 9 9 N 1.34779 * 120.00007 * 18.38229 * 7 6 5 10 10 C 1.47477 * 125.66295 * 5.59360 * 9 7 6 11 11 C 1.55241 * 104.79352 * 155.93431 * 10 9 7 12 12 C 1.54495 * 101.44146 * 36.64640 * 11 10 9 13 13 C 1.47178 * 125.66044 * 185.90198 * 9 7 6 14 14 C 1.52516 * 110.10227 * 206.80546 * 12 11 10 15 15 N 1.47300 * 108.39940 * 186.95585 * 14 12 11 16 16 C 1.36940 * 121.07274 * 229.42550 * 15 14 12 17 17 H 1.08003 * 119.99690 * 26.22861 * 16 15 14 18 18 C 1.38808 * 120.00209 * 206.24219 * 16 15 14 19 19 N 1.31617 * 120.00060 * 15.58598 * 18 16 15 20 20 Si 1.86795 * 119.99823 * 195.58833 * 18 16 15 21 21 H 1.48498 * 109.47312 * 94.61537 * 20 18 16 22 22 H 1.48504 * 109.47048 * 214.61370 * 20 18 16 23 23 H 1.48495 * 109.47266 * 334.60924 * 20 18 16 24 24 C 1.47170 * 117.86673 * 49.39556 * 15 14 12 25 25 C 1.53275 * 108.55046 * 308.87257 * 24 15 14 26 26 O 1.42064 * 110.38366 * 83.76481 * 12 11 10 27 27 C 1.39667 * 119.11326 * 359.97438 * 6 5 4 28 28 N 1.31483 * 120.71273 * 0.02562 * 27 6 5 29 29 H 4.51262 * 14.17510 * 359.97438 * 4 2 1 30 30 H 1.08004 * 120.39619 * 0.02562 * 4 3 2 31 31 H 1.08003 * 120.79683 * 180.27246 * 5 4 3 32 32 H 1.08997 * 110.35531 * 274.88356 * 10 9 7 33 33 H 1.08999 * 110.35570 * 37.17304 * 10 9 7 34 34 H 1.09005 * 111.20420 * 278.55881 * 11 10 9 35 35 H 1.09002 * 110.91686 * 154.61222 * 11 10 9 36 36 H 1.09004 * 109.91221 * 300.84057 * 13 9 7 37 37 H 1.08996 * 109.91124 * 61.92308 * 13 9 7 38 38 H 1.09002 * 109.67832 * 306.68762 * 14 12 11 39 39 H 1.09004 * 109.67558 * 67.19364 * 14 12 11 40 40 H 0.97000 * 119.99981 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.61938 * 68.58873 * 24 15 14 42 42 H 1.08990 * 109.62707 * 189.14891 * 24 15 14 43 43 H 1.09006 * 109.50962 * 172.81165 * 25 24 15 44 44 H 1.08994 * 109.51372 * 292.91528 * 25 24 15 45 45 H 1.07995 * 119.64519 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2961 -0.1585 -1.2045 5 6 4.6757 -0.1513 -1.1959 6 6 5.3343 0.0113 0.0315 7 6 6.8096 0.0253 0.0929 8 8 7.3759 -0.1694 1.1510 9 7 7.5285 0.2537 -1.0241 10 6 6.9765 0.6179 -2.3423 11 6 8.1359 1.3517 -3.0685 12 6 9.3617 0.5503 -2.5765 13 6 8.9942 0.1750 -1.1322 14 6 10.6071 1.4304 -2.5996 15 7 11.7760 0.5902 -2.2873 16 6 12.6853 0.9696 -1.3363 17 1 12.3826 1.6200 -0.5289 18 6 13.9960 0.5186 -1.4100 19 7 14.4487 -0.0081 -2.5280 20 14 15.1171 0.6591 0.0774 21 1 15.0875 -0.6138 0.8416 22 1 16.5052 0.9337 -0.3731 23 1 14.6500 1.7691 0.9463 24 6 11.9351 -0.6705 -3.0298 25 6 10.6206 -1.4545 -2.9467 26 8 9.5429 -0.6139 -3.3703 27 6 4.5762 0.1600 1.1950 28 7 3.2624 0.1479 1.1466 29 1 -1.0499 -0.0005 -0.0001 30 1 2.7559 -0.2811 -2.1317 31 1 5.2351 -0.2678 -2.1124 32 1 6.6876 -0.2774 -2.8928 33 1 6.1218 1.2839 -2.2246 34 1 8.1996 2.3941 -2.7562 35 1 8.0277 1.2753 -4.1504 36 1 9.4559 0.8768 -0.4376 37 1 9.3287 -0.8388 -0.9126 38 1 10.7262 1.8720 -3.5890 39 1 10.5123 2.2201 -1.8542 40 1 15.3645 -0.3236 -2.5794 41 1 12.1671 -0.4543 -4.0726 42 1 12.7399 -1.2571 -2.5869 43 1 10.6767 -2.3290 -3.5951 44 1 10.4516 -1.7739 -1.9184 45 1 5.0746 0.2862 2.1448 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972642203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = 47.212915 kcal Electronic energy + Delta-G solvation = -29513.136329 eV Core-core repulsion = 25498.271290 eV Total energy + Delta-G solvation = -4014.865039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.11053 -41.12343 -39.82529 -37.70915 -36.27074 -35.02351 -34.11781 -33.35763 -32.73710 -31.75089 -30.51221 -29.43865 -27.75724 -26.21344 -25.03788 -24.62247 -24.44092 -22.74665 -21.33792 -20.49613 -20.26084 -18.91387 -18.57933 -17.99169 -17.52136 -17.22507 -16.99638 -16.68063 -16.44231 -16.03323 -15.72484 -15.43594 -15.41878 -15.30850 -15.00828 -14.68274 -14.55912 -14.44497 -14.25331 -13.60538 -13.40980 -13.28778 -13.06925 -12.86988 -12.63097 -12.43019 -12.40728 -12.30284 -12.16817 -12.10819 -11.87380 -11.82491 -11.38724 -11.19735 -11.05176 -10.82267 -10.65418 -10.53352 -10.05789 -9.75358 -8.73952 -7.92204 -5.39003 -0.78676 0.07388 1.35408 1.42533 1.45210 1.53073 1.61038 1.71946 2.06532 2.44343 2.72870 2.87310 2.89554 3.21146 3.24345 3.42700 3.46284 3.59405 3.71951 3.73848 3.89253 3.91922 4.02492 4.20337 4.31130 4.35974 4.45664 4.53778 4.55188 4.64669 4.67017 4.73053 4.76922 4.81533 4.85537 4.93418 4.99379 5.00253 5.11327 5.17261 5.27346 5.43555 5.54606 5.61161 6.26609 6.30314 6.34023 6.45102 6.65560 6.88894 7.05756 7.73518 8.25970 9.12735 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.002545 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.016658 B =10997.538565 C =11778.378177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.218 4.218 3 C 0.234 3.766 4 C -0.140 4.140 5 C -0.042 4.042 6 C -0.185 4.185 7 C 0.571 3.429 8 O -0.581 6.581 9 N -0.605 5.605 10 C 0.090 3.910 11 C -0.110 4.110 12 C 0.098 3.902 13 C 0.104 3.896 14 C 0.128 3.872 15 N -0.612 5.612 16 C -0.258 4.258 17 H 0.065 0.935 18 C -0.047 4.047 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.271 1.271 24 C 0.145 3.855 25 C 0.047 3.953 26 O -0.367 6.367 27 C 0.156 3.844 28 N -0.500 5.500 29 H 0.272 0.728 30 H 0.183 0.817 31 H 0.188 0.812 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.251 0.749 41 H 0.008 0.992 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.038 0.962 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.539 0.341 -3.992 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.218 4.218 3 C 0.099 3.901 4 C -0.159 4.159 5 C -0.067 4.067 6 C -0.190 4.190 7 C 0.361 3.639 8 O -0.462 6.462 9 N -0.337 5.337 10 C -0.031 4.031 11 C -0.148 4.148 12 C 0.056 3.944 13 C -0.019 4.019 14 C 0.002 3.998 15 N -0.336 5.336 16 C -0.388 4.388 17 H 0.083 0.917 18 C -0.243 4.243 19 N -0.578 5.578 20 Si 0.792 3.208 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.196 1.196 24 C 0.019 3.981 25 C -0.030 4.030 26 O -0.286 6.286 27 C -0.004 4.004 28 N -0.209 5.209 29 H 0.288 0.712 30 H 0.200 0.800 31 H 0.204 0.796 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.138 0.862 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.130 0.870 44 H 0.056 0.944 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -27.666 0.251 -2.789 27.808 hybrid contribution 2.236 -0.174 0.633 2.330 sum -25.430 0.077 -2.156 25.522 Atomic orbital electron populations 1.25997 0.96316 0.92981 0.94964 1.19617 0.91537 1.05735 1.04958 1.17261 0.89314 0.93918 0.89601 1.22364 0.94018 1.00124 0.99424 1.22739 0.94786 0.91040 0.98156 1.20818 0.92513 1.08734 0.96917 1.18086 0.86971 0.76553 0.82271 1.90797 1.73038 1.52069 1.30285 1.48487 1.07128 1.67527 1.10577 1.23161 0.97766 1.00739 0.81389 1.22909 0.89798 0.98922 1.03169 1.22290 0.96462 0.87327 0.88323 1.22243 0.80034 1.01170 0.98467 1.21544 0.86305 0.92933 0.99036 1.44340 1.25474 1.19676 1.44154 1.19439 0.89451 1.28144 1.01805 0.91705 1.25705 0.97817 1.01797 0.98981 1.70139 1.15801 1.46418 1.25412 0.85312 0.78116 0.77884 0.79524 1.21516 1.21811 1.19593 1.21291 0.95260 0.87501 0.94065 1.23218 0.87058 0.93388 0.99350 1.87678 1.51836 1.34597 1.54450 1.22878 0.88137 0.91103 0.98270 1.67858 1.09515 1.14285 1.29234 0.71197 0.79956 0.79575 0.88008 0.86783 0.87709 0.86190 0.92602 0.92956 0.94793 0.91674 0.93934 0.97383 0.91525 0.86994 0.94365 0.81765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 19.25 74.32 1.43 0.63 16 2 C -0.22 -3.63 13.43 30.01 0.40 -3.23 16 3 C 0.23 4.64 6.59 40.58 0.27 4.91 16 4 C -0.14 -1.91 9.77 22.57 0.22 -1.69 16 5 C -0.04 -0.64 8.21 22.69 0.19 -0.45 16 6 C -0.18 -4.28 5.78 -19.96 -0.12 -4.40 16 7 C 0.57 17.26 7.71 86.73 0.67 17.93 16 8 O -0.58 -22.93 16.85 -3.97 -0.07 -23.00 16 9 N -0.61 -16.44 3.33 -815.47 -2.72 -19.16 16 10 C 0.09 1.51 4.94 86.96 0.43 1.94 16 11 C -0.11 -2.17 6.22 31.87 0.20 -1.97 16 12 C 0.10 3.06 0.81 -10.22 -0.01 3.05 16 13 C 0.10 3.56 5.96 86.48 0.52 4.08 16 14 C 0.13 4.98 5.30 86.07 0.46 5.44 16 15 N -0.61 -29.99 2.97 -698.65 -2.08 -32.07 16 16 C -0.26 -14.10 9.67 84.03 0.81 -13.29 16 17 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 18 C -0.05 -2.63 4.98 84.86 0.42 -2.21 16 19 N -0.93 -54.24 11.05 21.65 0.24 -54.00 16 20 Si 0.96 45.37 29.58 68.60 2.03 47.40 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 C 0.14 6.81 5.44 86.34 0.47 7.28 16 25 C 0.05 1.75 6.75 72.07 0.49 2.24 16 26 O -0.37 -12.24 10.26 -148.97 -1.53 -13.77 16 27 C 0.16 3.88 10.75 85.09 0.91 4.80 16 28 N -0.50 -12.40 10.27 -188.03 -1.93 -14.33 16 29 H 0.27 -0.26 7.80 -4.42 -0.03 -0.29 16 30 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 31 H 0.19 1.80 4.14 -2.91 -0.01 1.79 16 32 H 0.10 1.33 6.98 -2.39 -0.02 1.32 16 33 H 0.11 1.23 6.51 -2.39 -0.02 1.22 16 34 H 0.10 1.84 8.01 -2.38 -0.02 1.82 16 35 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 2.20 7.61 -2.39 -0.02 2.18 16 37 H 0.05 2.05 6.02 -2.39 -0.01 2.04 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 2.49 7.70 -2.39 -0.02 2.47 16 40 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.07 3.56 6.06 -2.39 -0.01 3.54 16 43 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 44 H 0.04 1.48 6.23 -2.39 -0.01 1.47 16 45 H 0.17 4.19 7.76 -2.91 -0.02 4.16 16 Total: -1.00 -77.28 368.84 2.74 -74.54 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.03 Total: 9.32 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 7.76 Total: 25.06 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -6.48 Total: -119.55 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.60 Total: -36.77 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -77.28 2.74 -74.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972642203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.752 kcal (2) G-P(sol) polarization free energy of solvation -77.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds