Wall clock time and date at job start Sat Apr 11 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30014 * 124.83432 * 2 1 4 4 C 1.35857 * 108.85173 * 179.97438 * 3 2 1 5 5 C 1.39832 * 133.62223 * 179.97438 * 4 3 2 6 6 C 1.36293 * 120.03448 * 179.74524 * 5 4 3 7 7 C 1.40088 * 120.41468 * 0.55781 * 6 5 4 8 8 C 1.47626 * 119.92654 * 179.71533 * 7 6 5 9 9 O 1.21584 * 120.00247 * 179.73091 * 8 7 6 10 10 N 1.34779 * 120.00194 * 359.72392 * 8 7 6 11 11 C 1.46502 * 120.00096 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.47049 * 180.02562 * 11 10 8 13 13 H 1.08995 * 115.48976 * 330.38668 * 12 11 10 14 14 C 1.52997 * 117.44132 * 185.00516 * 12 11 10 15 15 H 1.08998 * 120.26145 * 3.82939 * 14 12 11 16 16 C 1.54387 * 118.12106 * 160.81277 * 14 12 11 17 17 N 1.48138 * 104.62001 * 87.18736 * 16 14 12 18 18 C 1.36944 * 127.84114 * 140.41063 * 17 16 14 19 19 H 1.07995 * 119.99483 * 338.93940 * 18 17 16 20 20 C 1.38807 * 120.00029 * 158.92878 * 18 17 16 21 21 N 1.31619 * 120.00447 * 335.61590 * 20 18 17 22 22 Si 1.86805 * 119.99680 * 155.61871 * 20 18 17 23 23 H 1.48495 * 109.47169 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46757 * 240.00038 * 22 20 18 25 25 H 1.48496 * 109.47225 * 120.00112 * 22 20 18 26 26 C 1.48141 * 104.32594 * 320.67796 * 17 16 14 27 27 C 1.52997 * 117.44075 * 115.76355 * 12 11 10 28 28 H 1.09004 * 119.53861 * 355.88810 * 27 12 11 29 29 C 1.39435 * 120.14639 * 359.44063 * 7 6 5 30 30 C 1.38282 * 119.61822 * 0.27288 * 29 7 6 31 31 O 1.34145 * 124.84096 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.46976 * 89.97343 * 1 2 3 33 33 H 1.08998 * 109.47048 * 209.97596 * 1 2 3 34 34 H 1.09000 * 109.47384 * 329.97715 * 1 2 3 35 35 H 1.08005 * 119.98850 * 0.04673 * 5 4 3 36 36 H 1.08005 * 119.79165 * 180.27643 * 6 5 4 37 37 H 0.96999 * 120.00133 * 0.02562 * 10 8 7 38 38 H 1.09005 * 109.46670 * 60.01249 * 11 10 8 39 39 H 1.08993 * 109.47682 * 300.00774 * 11 10 8 40 40 H 1.08999 * 110.40784 * 328.40464 * 16 14 12 41 41 H 1.09001 * 110.50666 * 206.02885 * 16 14 12 42 42 H 0.96996 * 119.99488 * 354.47572 * 21 20 18 43 43 H 1.09001 * 110.41080 * 158.10669 * 26 17 16 44 44 H 1.09002 * 110.40681 * 280.54106 * 26 17 16 45 45 H 1.07996 * 120.18978 * 180.29707 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2496 1.0672 0.0000 4 6 3.5557 0.6931 0.0006 5 6 4.7618 1.4006 0.0004 6 6 5.9472 0.7280 0.0064 7 6 5.9679 -0.6727 0.0010 8 6 7.2581 -1.3902 0.0012 9 8 7.2776 -2.6059 0.0015 10 7 8.4144 -0.6977 0.0010 11 6 9.6947 -1.4098 0.0018 12 6 10.8416 -0.3970 0.0019 13 1 10.6272 0.5545 -0.4846 14 6 12.2655 -0.9442 -0.1157 15 1 12.4337 -2.0116 -0.2582 16 6 13.3817 0.0227 -0.5660 17 7 13.8525 0.6592 0.6860 18 6 15.1394 0.9650 1.0407 19 1 15.9656 0.4589 0.5636 20 6 15.3818 1.9254 2.0131 21 7 14.4874 2.8610 2.2515 22 14 16.9778 1.8900 2.9833 23 1 17.8085 0.7464 2.5282 24 1 16.6748 1.7366 4.4290 25 1 17.7183 3.1584 2.7646 26 6 12.6161 0.8841 1.4704 27 6 11.7602 -0.3723 1.2252 28 1 11.5383 -1.0152 2.0770 29 6 4.7726 -1.3907 0.0012 30 6 3.5678 -0.7121 0.0010 31 8 2.2734 -1.1010 0.0005 32 1 -0.3633 0.0005 -1.0277 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3634 0.8898 0.5142 35 1 4.7542 2.4806 0.0004 36 1 6.8765 1.2784 0.0107 37 1 8.3988 0.2721 0.0010 38 1 9.7627 -2.0359 -0.8879 39 1 9.7623 -2.0349 0.8921 40 1 12.9820 0.7738 -1.2472 41 1 14.1939 -0.5269 -1.0418 42 1 13.6958 2.9283 1.6949 43 1 12.8508 0.9820 2.5303 44 1 12.0948 1.7718 1.1120 45 1 4.7878 -2.4706 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978301096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:05 Heat of formation + Delta-G solvation = 37.136403 kcal Electronic energy + Delta-G solvation = -27626.303212 eV Core-core repulsion = 23611.001223 eV Total energy + Delta-G solvation = -4015.301989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.45125 -41.30663 -40.49437 -38.71375 -36.59605 -36.01887 -35.26615 -32.99825 -32.45656 -31.96232 -29.94150 -29.16436 -28.30797 -26.51616 -24.72061 -24.05027 -22.88487 -22.80999 -22.06334 -21.33188 -20.95527 -19.53442 -19.44924 -18.74655 -18.05788 -17.88910 -17.04751 -16.60437 -16.48587 -15.87253 -15.83898 -15.40999 -15.30442 -15.16370 -14.99508 -14.85302 -14.58438 -14.36604 -14.26510 -14.05792 -13.57460 -13.56053 -13.35385 -13.31597 -12.74090 -12.61685 -12.50970 -12.34973 -12.34455 -12.13626 -11.88104 -11.71921 -11.60807 -11.37694 -10.96530 -10.71181 -10.58496 -10.21538 -10.08264 -9.61956 -9.07360 -8.38116 -5.40081 -0.83013 -0.01400 0.97794 1.23722 1.57416 1.65699 1.75168 1.81830 1.97754 2.55364 2.60896 2.63563 2.70080 3.15689 3.26550 3.48028 3.52232 3.55447 3.72146 3.81056 3.83876 3.87918 4.08454 4.17415 4.19330 4.33243 4.35981 4.52369 4.59694 4.60139 4.63177 4.67955 4.76747 4.78409 4.84711 4.90100 4.97671 5.03345 5.04635 5.08249 5.16357 5.25868 5.30201 5.34507 5.39686 5.64035 6.27544 6.38148 6.40324 6.83060 7.02744 7.64020 8.31859 8.98240 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.001739 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.465753 B =16101.145246 C =16844.953498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.263 3.737 3 N -0.515 5.515 4 C 0.033 3.967 5 C -0.071 4.071 6 C -0.073 4.073 7 C -0.118 4.118 8 C 0.565 3.435 9 O -0.573 6.573 10 N -0.705 5.705 11 C 0.162 3.838 12 C -0.103 4.103 13 H 0.115 0.885 14 C -0.156 4.156 15 H 0.129 0.871 16 C 0.147 3.853 17 N -0.626 5.626 18 C -0.340 4.340 19 H 0.059 0.941 20 C -0.078 4.078 21 N -0.947 5.947 22 Si 1.124 2.876 23 H -0.273 1.273 24 H -0.287 1.287 25 H -0.288 1.288 26 C 0.169 3.831 27 C -0.175 4.175 28 H 0.117 0.883 29 C -0.032 4.032 30 C -0.024 4.024 31 O -0.219 6.219 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.416 0.584 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.026 0.974 41 H 0.052 0.948 42 H 0.255 0.745 43 H 0.029 0.971 44 H 0.016 0.984 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.687 -6.160 -6.323 30.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.053 3.947 3 N -0.245 5.245 4 C -0.079 4.079 5 C -0.090 4.090 6 C -0.093 4.093 7 C -0.122 4.122 8 C 0.353 3.647 9 O -0.454 6.454 10 N -0.357 5.357 11 C 0.039 3.961 12 C -0.121 4.121 13 H 0.133 0.867 14 C -0.176 4.176 15 H 0.147 0.853 16 C 0.022 3.978 17 N -0.352 5.352 18 C -0.469 4.469 19 H 0.077 0.923 20 C -0.274 4.274 21 N -0.589 5.589 22 Si 0.948 3.052 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.215 1.215 26 C 0.044 3.956 27 C -0.195 4.195 28 H 0.134 0.866 29 C -0.052 4.052 30 C -0.074 4.074 31 O -0.111 6.111 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.182 0.818 36 H 0.190 0.810 37 H 0.255 0.745 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.034 0.966 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -27.841 -5.667 -5.069 28.861 hybrid contribution -0.335 -0.846 -1.178 1.488 sum -28.177 -6.513 -6.247 29.587 Atomic orbital electron populations 1.20842 0.76892 1.07415 1.07141 1.27771 0.98432 0.77297 0.91163 1.70691 1.00983 1.29877 1.22975 1.20465 0.93203 0.91442 1.02821 1.20278 0.87693 1.01800 0.99188 1.21198 0.99607 0.91859 0.96596 1.19566 0.91700 0.94319 1.06602 1.18079 0.84085 0.86544 0.76008 1.90789 1.88043 1.14862 1.51694 1.45761 1.04750 1.11350 1.73840 1.20774 0.79560 0.92933 1.02855 1.22430 0.89632 1.00476 0.99606 0.86671 1.23756 0.92815 0.99954 1.01059 0.85295 1.21293 0.94497 0.93538 0.88456 1.45603 1.02454 1.71967 1.15174 1.20062 0.82882 1.19266 1.24653 0.92290 1.27257 1.07472 0.91445 1.01227 1.70830 1.13493 1.31055 1.43525 0.82747 0.71386 0.76032 0.75078 1.19754 1.21395 1.21501 1.20883 0.86277 0.93601 0.94865 1.23809 1.02767 1.00313 0.92576 0.86551 1.19885 0.86556 1.01077 0.97643 1.20158 0.84229 0.94694 1.08341 1.84509 1.15078 1.37009 1.74530 0.85997 0.86654 0.86169 0.81796 0.81029 0.74549 0.89902 0.91263 0.95576 0.92921 0.93458 0.95258 0.96596 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.24 10.51 71.24 0.75 0.51 16 2 C 0.26 4.11 8.23 88.38 0.73 4.83 16 3 N -0.51 -10.53 11.33 -296.04 -3.35 -13.89 16 4 C 0.03 0.70 7.24 39.46 0.29 0.98 16 5 C -0.07 -1.16 10.03 22.20 0.22 -0.94 16 6 C -0.07 -1.07 9.46 22.27 0.21 -0.86 16 7 C -0.12 -2.33 5.88 -20.06 -0.12 -2.45 16 8 C 0.56 12.99 7.76 86.72 0.67 13.66 16 9 O -0.57 -17.41 16.33 -3.98 -0.06 -17.47 16 10 N -0.70 -13.40 5.50 -466.16 -2.57 -15.96 16 11 C 0.16 3.52 5.95 86.38 0.51 4.03 16 12 C -0.10 -2.58 5.40 -10.79 -0.06 -2.64 16 13 H 0.12 2.75 8.04 -2.39 -0.02 2.73 16 14 C -0.16 -4.88 6.85 -9.89 -0.07 -4.94 16 15 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 16 C 0.15 5.92 7.04 86.54 0.61 6.53 16 17 N -0.63 -31.87 3.23 -688.98 -2.22 -34.10 16 18 C -0.34 -19.42 10.19 84.03 0.86 -18.57 16 19 H 0.06 3.35 7.94 -2.91 -0.02 3.32 16 20 C -0.08 -4.50 5.12 84.86 0.43 -4.07 16 21 N -0.95 -58.07 12.82 21.65 0.28 -57.79 16 22 Si 1.12 51.33 29.98 68.60 2.06 53.39 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 25 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 26 C 0.17 7.75 4.98 86.40 0.43 8.18 16 27 C -0.17 -5.90 6.72 -10.03 -0.07 -5.97 16 28 H 0.12 3.71 8.12 -2.38 -0.02 3.70 16 29 C -0.03 -0.68 9.60 22.57 0.22 -0.47 16 30 C -0.02 -0.53 7.42 22.84 0.17 -0.36 16 31 O -0.22 -4.32 10.77 -9.58 -0.10 -4.43 16 32 H 0.12 0.01 8.14 -2.38 -0.02 -0.01 16 33 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.17 1.42 6.37 -2.91 -0.02 1.40 16 37 H 0.42 5.70 6.40 -92.71 -0.59 5.11 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.07 1.63 7.94 -2.39 -0.02 1.61 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.26 15.81 6.41 -92.71 -0.59 15.22 16 43 H 0.03 1.52 7.47 -2.39 -0.02 1.50 16 44 H 0.02 0.76 7.67 -2.39 -0.02 0.74 16 45 H 0.15 3.14 7.63 -2.91 -0.02 3.11 16 Total: -1.00 -79.49 378.70 0.43 -79.06 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.62 Total: 13.73 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 5.79 Total: -2.54 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -7.87 Total: -121.74 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.17 Total: -21.90 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.06 Total: 53.39 kcal Total: -79.49 0.43 -79.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978301096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.197 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds