Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29874 * 124.83947 * 2 1 4 4 C 1.36121 * 108.76788 * 180.02562 * 3 2 1 5 5 C 1.39263 * 133.76217 * 180.02562 * 4 3 2 6 6 C 1.39192 * 119.47024 * 179.97438 * 5 4 3 7 7 C 1.47711 * 119.95467 * 179.97438 * 6 5 4 8 8 O 1.21575 * 120.00136 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00176 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00096 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.47049 * 180.02562 * 10 9 7 12 12 H 1.08995 * 115.48976 * 330.38668 * 11 10 9 13 13 C 1.52997 * 117.44132 * 185.00516 * 11 10 9 14 14 H 1.08998 * 120.26145 * 3.82939 * 13 11 10 15 15 C 1.54387 * 118.12106 * 160.81277 * 13 11 10 16 16 N 1.48138 * 104.62001 * 87.18736 * 15 13 11 17 17 C 1.36944 * 127.84114 * 140.41063 * 16 15 13 18 18 H 1.07995 * 119.99483 * 338.93940 * 17 16 15 19 19 C 1.38807 * 120.00029 * 158.92878 * 17 16 15 20 20 N 1.31619 * 120.00447 * 335.61590 * 19 17 16 21 21 Si 1.86805 * 119.99680 * 155.61871 * 19 17 16 22 22 H 1.48495 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46757 * 240.00038 * 21 19 17 24 24 H 1.48496 * 109.47225 * 120.00112 * 21 19 17 25 25 C 1.48141 * 104.32594 * 320.67796 * 16 15 13 26 26 C 1.52997 * 117.44075 * 115.76355 * 11 10 9 27 27 H 1.09004 * 119.53861 * 355.88810 * 26 11 10 28 28 C 1.40053 * 120.08957 * 0.27854 * 6 5 4 29 29 C 1.36527 * 120.47793 * 359.40650 * 28 6 5 30 30 C 1.38899 * 120.18694 * 0.62196 * 29 28 6 31 31 O 1.34249 * 124.83094 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47495 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47046 * 299.97976 * 1 2 3 34 34 H 1.09002 * 109.47038 * 59.97143 * 1 2 3 35 35 H 1.07998 * 120.26573 * 359.97438 * 5 4 3 36 36 H 0.96999 * 120.00133 * 0.02562 * 9 7 6 37 37 H 1.09005 * 109.46670 * 60.01249 * 10 9 7 38 38 H 1.08993 * 109.47682 * 300.00774 * 10 9 7 39 39 H 1.08999 * 110.40784 * 328.40464 * 15 13 11 40 40 H 1.09001 * 110.50666 * 206.02885 * 15 13 11 41 41 H 0.96996 * 119.99488 * 354.47572 * 20 19 17 42 42 H 1.09001 * 110.41080 * 158.10669 * 25 16 15 43 43 H 1.09002 * 110.40681 * 280.54106 * 25 16 15 44 44 H 1.08011 * 119.75777 * 179.71872 * 28 6 5 45 45 H 1.08000 * 119.90257 * 180.25684 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2489 1.0659 0.0000 4 6 3.5569 0.6891 -0.0006 5 6 4.7610 1.3889 -0.0004 6 6 5.9620 0.6853 -0.0006 7 6 7.2452 1.4168 -0.0010 8 8 7.2520 2.6325 -0.0006 9 7 8.4087 0.7364 -0.0017 10 6 9.6815 1.4619 -0.0027 11 6 10.8390 0.4612 -0.0040 12 1 10.6348 -0.4928 0.4820 13 6 12.2571 1.0232 0.1133 14 1 12.4142 2.0923 0.2564 15 6 13.3836 0.0678 0.5624 16 7 13.8605 -0.5630 -0.6902 17 6 15.1504 -0.8549 -1.0457 18 1 15.9714 -0.3406 -0.5687 19 6 15.4024 -1.8122 -2.0188 20 7 14.5176 -2.7570 -2.2574 21 14 16.9974 -1.7594 -2.9898 22 1 17.8163 -0.6075 -2.5343 23 1 16.6921 -1.6083 -4.4352 24 1 17.7512 -3.0201 -2.7723 25 6 12.6261 -0.8003 -1.4741 26 6 11.7572 0.4469 -1.2277 27 1 11.5282 1.0880 -2.0790 28 6 5.9553 -0.7152 -0.0069 29 6 4.7754 -1.4020 -0.0007 30 6 3.5677 -0.7158 -0.0011 31 8 2.2738 -1.1020 -0.0005 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5136 0.8902 34 1 -0.3633 0.5143 -0.8897 35 1 4.7628 2.4689 -0.0001 36 1 8.4034 -0.2335 -0.0024 37 1 9.7434 2.0881 0.8874 38 1 9.7421 2.0883 -0.8926 39 1 12.9921 -0.6879 1.2433 40 1 14.1903 0.6256 1.0382 41 1 13.7272 -2.8329 -1.7005 42 1 12.8613 -0.8950 -2.5342 43 1 12.1144 -1.6937 -1.1161 44 1 6.8904 -1.2557 -0.0117 45 1 4.7811 -2.4820 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978332829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = 61.382473 kcal Electronic energy + Delta-G solvation = -27619.427902 eV Core-core repulsion = 23605.177301 eV Total energy + Delta-G solvation = -4014.250601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.74967 -40.29949 -39.07233 -37.86992 -35.41708 -35.19119 -33.66056 -32.23539 -31.33543 -30.80126 -28.90328 -27.54951 -27.07893 -25.06236 -24.03110 -22.86085 -22.07433 -21.27388 -21.21045 -20.12235 -19.46200 -18.57787 -18.03202 -17.48510 -17.35287 -16.95809 -16.13020 -15.45772 -15.26844 -14.76646 -14.62898 -14.26493 -14.11888 -13.93901 -13.85200 -13.68672 -13.57543 -13.29482 -13.26747 -13.17371 -13.00522 -12.64270 -12.06633 -12.01478 -11.76296 -11.66451 -11.01842 -10.95125 -10.72605 -10.58642 -10.48758 -10.29575 -10.10199 -9.68131 -9.61751 -9.35094 -9.22968 -9.03812 -8.98998 -8.52352 -7.03289 -6.17643 -3.23409 0.21737 0.31291 1.87249 1.94908 2.51638 2.80100 3.32883 3.37222 3.48325 3.51716 3.64847 3.95399 3.97612 4.30836 4.40404 4.49668 4.51714 4.52953 4.72073 4.77592 4.84284 4.87171 5.04341 5.13087 5.15218 5.30860 5.34088 5.40776 5.52471 5.57814 5.67384 5.69955 5.73497 5.75214 5.80486 5.80666 5.95229 5.99525 6.20160 6.36661 6.49743 6.55780 6.72903 6.92638 6.95301 7.09916 7.28062 7.71411 7.96744 8.41028 8.93202 9.73904 10.36678 11.18494 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.001739 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.623798 B =16096.098565 C =16847.048675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.248 3.752 3 N -0.475 5.475 4 C 0.014 3.986 5 C 0.005 3.995 6 C -0.133 4.133 7 C 0.561 3.439 8 O -0.535 6.535 9 N -0.717 5.717 10 C 0.155 3.845 11 C -0.147 4.147 12 H 0.104 0.896 13 C -0.161 4.161 14 H 0.108 0.892 15 C 0.153 3.847 16 N -0.598 5.598 17 C -0.331 4.331 18 H 0.065 0.935 19 C -0.026 4.026 20 N -0.919 5.919 21 Si 1.074 2.926 22 H -0.291 1.291 23 H -0.289 1.289 24 H -0.293 1.293 25 C 0.164 3.836 26 C -0.165 4.165 27 H 0.106 0.894 28 C -0.063 4.063 29 C -0.094 4.094 30 C 0.028 3.972 31 O -0.212 6.212 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.151 0.849 36 H 0.402 0.598 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.053 0.947 41 H 0.268 0.732 42 H 0.066 0.934 43 H 0.025 0.975 44 H 0.147 0.853 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.337 3.245 5.763 28.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.036 3.964 3 N -0.204 5.204 4 C -0.097 4.097 5 C -0.015 4.015 6 C -0.137 4.137 7 C 0.348 3.652 8 O -0.413 6.413 9 N -0.368 5.368 10 C 0.032 3.968 11 C -0.166 4.166 12 H 0.122 0.878 13 C -0.181 4.181 14 H 0.126 0.874 15 C 0.027 3.973 16 N -0.323 5.323 17 C -0.458 4.458 18 H 0.083 0.917 19 C -0.227 4.227 20 N -0.560 5.560 21 Si 0.904 3.096 22 H -0.218 1.218 23 H -0.216 1.216 24 H -0.220 1.220 25 C 0.038 3.962 26 C -0.185 4.185 27 H 0.124 0.876 28 C -0.082 4.082 29 C -0.112 4.112 30 C -0.023 4.023 31 O -0.103 6.103 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.169 0.831 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.164 0.836 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.470 3.988 4.480 27.141 hybrid contribution -0.633 -0.448 1.275 1.493 sum -27.104 3.539 5.755 27.933 Atomic orbital electron populations 1.20447 0.80571 1.05381 1.05735 1.26567 0.96750 0.78070 0.95005 1.70648 1.00694 1.28899 1.20185 1.19719 0.92127 0.91186 1.06703 1.20397 0.87256 1.01174 0.92649 1.19768 0.93425 0.93533 1.06988 1.17959 0.83404 0.87094 0.76760 1.90805 1.87515 1.13233 1.49761 1.45910 1.05586 1.10631 1.74717 1.20911 0.79982 0.93433 1.02496 1.22524 0.90503 1.00028 1.03541 0.87801 1.23851 0.92319 0.99665 1.02271 0.87418 1.21154 0.93052 0.93151 0.89937 1.45300 1.02386 1.71834 1.12736 1.19804 0.81339 1.19918 1.24761 0.91694 1.25873 1.04983 0.91791 1.00081 1.70715 1.13413 1.29016 1.42822 0.83397 0.74533 0.75277 0.76416 1.21763 1.21606 1.22021 1.21040 0.86144 0.91564 0.97425 1.24053 1.00799 1.02555 0.91110 0.87598 1.20911 0.97941 0.92806 0.96502 1.19545 0.86923 1.00817 1.03954 1.20526 0.83954 0.94482 1.03366 1.84501 1.15270 1.36377 1.74184 0.88792 0.87793 0.87781 0.83095 0.76221 0.90796 0.90981 0.95890 0.92850 0.92073 0.91531 0.95725 0.83551 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.00 0.38 0.19 16 2 C 0.25 2.07 8.23 -13.11 -0.11 1.96 16 3 N -0.47 -5.31 11.34 -8.72 -0.10 -5.41 16 4 C 0.01 0.16 7.23 -84.73 -0.61 -0.45 16 5 C 0.00 0.06 9.64 -38.85 -0.37 -0.32 16 6 C -0.13 -1.40 5.87 -104.99 -0.62 -2.02 16 7 C 0.56 7.01 7.77 -12.39 -0.10 6.91 16 8 O -0.54 -8.56 16.33 5.30 0.09 -8.48 16 9 N -0.72 -7.82 5.51 -61.29 -0.34 -8.16 16 10 C 0.15 1.93 5.95 -4.04 -0.02 1.91 16 11 C -0.15 -2.06 5.40 -90.62 -0.49 -2.55 16 12 H 0.10 1.42 8.04 -51.93 -0.42 1.00 16 13 C -0.16 -2.70 6.85 -89.22 -0.61 -3.31 16 14 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 15 C 0.15 3.14 7.04 -2.41 -0.02 3.13 16 16 N -0.60 -15.04 3.23 -169.12 -0.55 -15.59 16 17 C -0.33 -9.29 10.19 -15.06 -0.15 -9.45 16 18 H 0.07 1.82 7.94 -52.49 -0.42 1.41 16 19 C -0.03 -0.73 5.12 -17.43 -0.09 -0.82 16 20 N -0.92 -27.47 12.82 55.49 0.71 -26.76 16 21 Si 1.07 25.25 29.98 -169.99 -5.10 20.15 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.16 3.70 4.98 -2.63 -0.01 3.68 16 26 C -0.17 -2.91 6.72 -89.43 -0.60 -3.51 16 27 H 0.11 1.78 8.12 -51.93 -0.42 1.36 16 28 C -0.06 -0.50 9.47 -39.52 -0.37 -0.88 16 29 C -0.09 -0.75 9.99 -39.95 -0.40 -1.15 16 30 C 0.03 0.28 7.43 -38.49 -0.29 0.00 16 31 O -0.21 -2.00 10.77 3.79 0.04 -1.96 16 32 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.15 1.77 7.64 -52.49 -0.40 1.37 16 36 H 0.40 3.40 6.41 -40.82 -0.26 3.13 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.27 8.00 6.41 -40.82 -0.26 7.74 16 42 H 0.07 1.67 7.47 -51.93 -0.39 1.29 16 43 H 0.03 0.57 7.67 -51.93 -0.40 0.17 16 44 H 0.15 0.78 6.37 -52.48 -0.33 0.44 16 45 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -35.62 378.73 -9.91 -45.53 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.89 Total: 1.64 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -4.49 Total: -6.68 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.27 Total: -55.91 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.13 Total: -10.43 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.10 Total: 20.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.62 -9.91 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978332829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.909 kcal (2) G-P(sol) polarization free energy of solvation -35.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds