Wall clock time and date at job start Sat Apr 11 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29874 * 124.83947 * 2 1 4 4 C 1.36121 * 108.76788 * 180.02562 * 3 2 1 5 5 C 1.39263 * 133.76217 * 180.02562 * 4 3 2 6 6 C 1.39192 * 119.47024 * 179.97438 * 5 4 3 7 7 C 1.47711 * 119.95467 * 179.97438 * 6 5 4 8 8 O 1.21575 * 120.00136 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00176 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00096 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.47049 * 180.02562 * 10 9 7 12 12 H 1.08995 * 115.48976 * 330.38668 * 11 10 9 13 13 C 1.52997 * 117.44132 * 185.00516 * 11 10 9 14 14 H 1.08998 * 120.26145 * 3.82939 * 13 11 10 15 15 C 1.54387 * 118.12106 * 160.81277 * 13 11 10 16 16 N 1.48138 * 104.62001 * 87.18736 * 15 13 11 17 17 C 1.36944 * 127.84114 * 140.41063 * 16 15 13 18 18 H 1.07995 * 119.99483 * 338.93940 * 17 16 15 19 19 C 1.38807 * 120.00029 * 158.92878 * 17 16 15 20 20 N 1.31619 * 120.00447 * 335.61590 * 19 17 16 21 21 Si 1.86805 * 119.99680 * 155.61871 * 19 17 16 22 22 H 1.48495 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46757 * 240.00038 * 21 19 17 24 24 H 1.48496 * 109.47225 * 120.00112 * 21 19 17 25 25 C 1.48141 * 104.32594 * 320.67796 * 16 15 13 26 26 C 1.52997 * 117.44075 * 115.76355 * 11 10 9 27 27 H 1.09004 * 119.53861 * 355.88810 * 26 11 10 28 28 C 1.40053 * 120.08957 * 0.27854 * 6 5 4 29 29 C 1.36527 * 120.47793 * 359.40650 * 28 6 5 30 30 C 1.38899 * 120.18694 * 0.62196 * 29 28 6 31 31 O 1.34249 * 124.83094 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47495 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47046 * 299.97976 * 1 2 3 34 34 H 1.09002 * 109.47038 * 59.97143 * 1 2 3 35 35 H 1.07998 * 120.26573 * 359.97438 * 5 4 3 36 36 H 0.96999 * 120.00133 * 0.02562 * 9 7 6 37 37 H 1.09005 * 109.46670 * 60.01249 * 10 9 7 38 38 H 1.08993 * 109.47682 * 300.00774 * 10 9 7 39 39 H 1.08999 * 110.40784 * 328.40464 * 15 13 11 40 40 H 1.09001 * 110.50666 * 206.02885 * 15 13 11 41 41 H 0.96996 * 119.99488 * 354.47572 * 20 19 17 42 42 H 1.09001 * 110.41080 * 158.10669 * 25 16 15 43 43 H 1.09002 * 110.40681 * 280.54106 * 25 16 15 44 44 H 1.08011 * 119.75777 * 179.71872 * 28 6 5 45 45 H 1.08000 * 119.90257 * 180.25684 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2489 1.0659 0.0000 4 6 3.5569 0.6891 -0.0006 5 6 4.7610 1.3889 -0.0004 6 6 5.9620 0.6853 -0.0006 7 6 7.2452 1.4168 -0.0010 8 8 7.2520 2.6325 -0.0006 9 7 8.4087 0.7364 -0.0017 10 6 9.6815 1.4619 -0.0027 11 6 10.8390 0.4612 -0.0040 12 1 10.6348 -0.4928 0.4820 13 6 12.2571 1.0232 0.1133 14 1 12.4142 2.0923 0.2564 15 6 13.3836 0.0678 0.5624 16 7 13.8605 -0.5630 -0.6902 17 6 15.1504 -0.8549 -1.0457 18 1 15.9714 -0.3406 -0.5687 19 6 15.4024 -1.8122 -2.0188 20 7 14.5176 -2.7570 -2.2574 21 14 16.9974 -1.7594 -2.9898 22 1 17.8163 -0.6075 -2.5343 23 1 16.6921 -1.6083 -4.4352 24 1 17.7512 -3.0201 -2.7723 25 6 12.6261 -0.8003 -1.4741 26 6 11.7572 0.4469 -1.2277 27 1 11.5282 1.0880 -2.0790 28 6 5.9553 -0.7152 -0.0069 29 6 4.7754 -1.4020 -0.0007 30 6 3.5677 -0.7158 -0.0011 31 8 2.2738 -1.1020 -0.0005 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5136 0.8902 34 1 -0.3633 0.5143 -0.8897 35 1 4.7628 2.4689 -0.0001 36 1 8.4034 -0.2335 -0.0024 37 1 9.7434 2.0881 0.8874 38 1 9.7421 2.0883 -0.8926 39 1 12.9921 -0.6879 1.2433 40 1 14.1903 0.6256 1.0382 41 1 13.7272 -2.8329 -1.7005 42 1 12.8613 -0.8950 -2.5342 43 1 12.1144 -1.6937 -1.1161 44 1 6.8904 -1.2557 -0.0117 45 1 4.7811 -2.4820 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978332829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:08 Heat of formation + Delta-G solvation = 36.308108 kcal Electronic energy + Delta-G solvation = -27620.515208 eV Core-core repulsion = 23605.177301 eV Total energy + Delta-G solvation = -4015.337907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.43545 -41.30001 -40.49308 -38.69453 -36.59492 -36.06760 -35.24377 -32.99291 -32.45029 -32.01151 -29.71959 -29.15203 -28.36597 -26.63698 -25.02669 -23.55092 -22.90541 -22.74439 -22.16964 -21.46402 -20.95943 -19.53895 -19.44790 -18.75387 -18.03945 -17.77766 -17.06897 -16.60117 -16.48624 -15.90524 -15.83918 -15.41997 -15.28331 -15.17728 -15.00641 -14.77144 -14.58795 -14.36529 -14.17851 -14.08657 -13.56297 -13.52935 -13.45154 -13.33336 -12.74979 -12.61658 -12.50860 -12.39321 -12.34846 -12.13677 -11.88191 -11.68129 -11.60712 -11.36998 -10.96475 -10.71039 -10.58339 -10.27116 -9.94463 -9.68397 -9.07174 -8.37991 -5.39907 -0.50352 -0.42940 1.21364 1.33629 1.57512 1.63827 1.65712 1.81887 1.86526 2.55738 2.59848 2.62615 2.76166 3.15883 3.26378 3.48103 3.52304 3.55562 3.72216 3.80070 3.86041 3.94282 4.06969 4.15013 4.19280 4.33234 4.36251 4.53227 4.58411 4.60978 4.62219 4.68771 4.77955 4.78194 4.88068 4.90159 4.97661 5.01607 5.03812 5.08831 5.19403 5.25840 5.29448 5.33056 5.37921 5.64169 6.27788 6.39118 6.42595 6.83303 7.04428 7.64111 8.31968 8.98407 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.001739 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.623798 B =16096.098565 C =16847.048675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.257 3.743 3 N -0.516 5.516 4 C -0.008 4.008 5 C -0.015 4.015 6 C -0.136 4.136 7 C 0.564 3.436 8 O -0.576 6.576 9 N -0.705 5.705 10 C 0.162 3.838 11 C -0.101 4.101 12 H 0.117 0.883 13 C -0.157 4.157 14 H 0.128 0.872 15 C 0.147 3.853 16 N -0.626 5.626 17 C -0.340 4.340 18 H 0.059 0.941 19 C -0.078 4.078 20 N -0.946 5.946 21 Si 1.123 2.877 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.288 1.288 25 C 0.169 3.831 26 C -0.175 4.175 27 H 0.116 0.884 28 C -0.056 4.056 29 C -0.084 4.084 30 C 0.015 3.985 31 O -0.215 6.215 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.135 0.865 36 H 0.416 0.584 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.027 0.973 40 H 0.052 0.948 41 H 0.256 0.744 42 H 0.029 0.971 43 H 0.017 0.983 44 H 0.179 0.821 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.632 2.661 6.322 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.046 3.954 3 N -0.246 5.246 4 C -0.119 4.119 5 C -0.035 4.035 6 C -0.140 4.140 7 C 0.352 3.648 8 O -0.457 6.457 9 N -0.357 5.357 10 C 0.038 3.962 11 C -0.120 4.120 12 H 0.135 0.865 13 C -0.177 4.177 14 H 0.146 0.854 15 C 0.023 3.977 16 N -0.352 5.352 17 C -0.469 4.469 18 H 0.077 0.923 19 C -0.274 4.274 20 N -0.589 5.589 21 Si 0.947 3.053 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.215 1.215 25 C 0.044 3.956 26 C -0.195 4.195 27 H 0.134 0.866 28 C -0.074 4.074 29 C -0.103 4.103 30 C -0.036 4.036 31 O -0.107 6.107 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.153 0.847 36 H 0.255 0.745 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.035 0.965 44 H 0.196 0.804 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -27.782 3.399 5.069 28.445 hybrid contribution -0.335 -0.274 1.171 1.248 sum -28.117 3.126 6.239 28.970 Atomic orbital electron populations 1.20798 0.76948 1.07336 1.06989 1.27650 0.98328 0.77202 0.92255 1.70646 1.00994 1.30414 1.22531 1.19895 0.92340 0.92209 1.07427 1.20337 0.88102 1.00651 0.94387 1.19663 0.91997 0.94633 1.07739 1.18185 0.84148 0.86628 0.75880 1.90787 1.88064 1.15073 1.51742 1.45745 1.04660 1.11335 1.73958 1.20764 0.79772 0.92881 1.02749 1.22425 0.89534 1.00495 0.99586 0.86537 1.23757 0.92881 0.99924 1.01112 0.85401 1.21290 0.94364 0.93638 0.88456 1.45601 1.02273 1.72190 1.15137 1.20060 0.82879 1.19312 1.24622 0.92325 1.27247 1.07466 0.91447 1.01206 1.70829 1.13920 1.30619 1.43508 0.82749 0.71416 0.76019 0.75080 1.19799 1.21399 1.21480 1.20883 0.86230 0.93609 0.94871 1.23811 1.02665 1.00451 0.92540 0.86628 1.21212 0.99377 0.91537 0.95271 1.19951 0.85890 1.02319 1.02106 1.20889 0.84908 0.94129 1.03682 1.84521 1.15082 1.36768 1.74299 0.86478 0.86324 0.86396 0.84715 0.74507 0.90037 0.91404 0.95503 0.92960 0.93435 0.95257 0.96492 0.80394 0.80649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 71.24 0.75 0.50 16 2 C 0.26 4.04 8.23 88.40 0.73 4.76 16 3 N -0.52 -11.66 11.34 -296.34 -3.36 -15.02 16 4 C -0.01 -0.19 7.23 39.28 0.28 0.09 16 5 C -0.01 -0.35 9.64 22.75 0.22 -0.13 16 6 C -0.14 -2.75 5.87 -20.10 -0.12 -2.87 16 7 C 0.56 13.42 7.77 86.75 0.67 14.10 16 8 O -0.58 -18.37 16.33 -3.95 -0.06 -18.43 16 9 N -0.70 -13.53 5.51 -466.08 -2.57 -16.10 16 10 C 0.16 3.58 5.95 86.38 0.51 4.09 16 11 C -0.10 -2.56 5.40 -10.79 -0.06 -2.62 16 12 H 0.12 2.75 8.04 -2.39 -0.02 2.73 16 13 C -0.16 -4.92 6.85 -9.89 -0.07 -4.99 16 14 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 15 C 0.15 5.92 7.04 86.54 0.61 6.53 16 16 N -0.63 -31.81 3.23 -688.98 -2.22 -34.03 16 17 C -0.34 -19.40 10.19 84.03 0.86 -18.54 16 18 H 0.06 3.33 7.94 -2.91 -0.02 3.30 16 19 C -0.08 -4.47 5.12 84.86 0.43 -4.04 16 20 N -0.95 -57.82 12.82 21.65 0.28 -57.55 16 21 Si 1.12 51.23 29.98 68.60 2.06 53.29 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 25 C 0.17 7.73 4.98 86.40 0.43 8.16 16 26 C -0.17 -5.91 6.72 -10.03 -0.07 -5.97 16 27 H 0.12 3.71 8.12 -2.38 -0.02 3.69 16 28 C -0.06 -0.75 9.47 22.31 0.21 -0.53 16 29 C -0.08 -1.14 9.99 22.03 0.22 -0.92 16 30 C 0.02 0.29 7.43 22.98 0.17 0.46 16 31 O -0.21 -3.76 10.77 -9.34 -0.10 -3.86 16 32 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 34 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.13 3.48 7.64 -2.91 -0.02 3.45 16 36 H 0.42 5.54 6.41 -92.71 -0.59 4.95 16 37 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.07 1.64 7.94 -2.39 -0.02 1.62 16 39 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.26 15.74 6.41 -92.71 -0.59 15.15 16 42 H 0.03 1.52 7.47 -2.39 -0.02 1.50 16 43 H 0.02 0.80 7.67 -2.39 -0.02 0.78 16 44 H 0.18 1.16 6.37 -2.91 -0.02 1.14 16 45 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -80.97 378.73 0.42 -80.55 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.62 Total: 13.06 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 5.79 Total: -1.91 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -7.87 Total: -122.70 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.17 Total: -22.29 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.06 Total: 53.29 kcal Total: -80.97 0.42 -80.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978332829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.854 kcal (2) G-P(sol) polarization free energy of solvation -80.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds