Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30009 * 124.84264 * 2 1 4 4 C 1.35842 * 108.86115 * 179.97438 * 3 2 1 5 5 C 1.39841 * 133.62686 * 179.97438 * 4 3 2 6 6 C 1.36294 * 120.03614 * 180.02562 * 5 4 3 7 7 C 1.40087 * 120.41589 * 359.97438 * 6 5 4 8 8 C 1.47628 * 119.92511 * 179.97438 * 7 6 5 9 9 O 1.21580 * 119.99822 * 209.30893 * 8 7 6 10 10 N 1.34773 * 120.00059 * 29.31632 * 8 7 6 11 11 C 1.47163 * 120.70894 * 5.74651 * 10 8 7 12 12 C 1.53889 * 108.02799 * 132.73841 * 11 10 8 13 13 H 1.08997 * 112.09278 * 182.55012 * 12 11 10 14 14 C 1.54553 * 107.82939 * 306.50753 * 12 11 10 15 15 C 1.54270 * 104.84738 * 89.07457 * 14 12 11 16 16 C 1.54541 * 104.85311 * 359.97438 * 15 14 12 17 17 H 1.09000 * 112.18828 * 146.41608 * 16 15 14 18 18 C 1.47159 * 120.70914 * 185.47291 * 10 8 7 19 19 N 1.48302 * 107.20975 * 58.36317 * 12 11 10 20 20 C 1.36941 * 128.07538 * 106.71929 * 19 12 11 21 21 H 1.07998 * 119.99763 * 165.13160 * 20 19 12 22 22 C 1.38807 * 119.99978 * 345.13469 * 20 19 12 23 23 N 1.31614 * 120.00175 * 350.75121 * 22 20 19 24 24 Si 1.86804 * 119.99990 * 170.74682 * 22 20 19 25 25 H 1.48505 * 109.46889 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46868 * 120.00070 * 24 22 20 27 27 H 1.48493 * 109.47480 * 240.00394 * 24 22 20 28 28 C 1.39436 * 120.15054 * 0.02562 * 7 6 5 29 29 C 1.38292 * 119.61453 * 359.97438 * 28 7 6 30 30 O 1.34146 * 124.83786 * 180.23672 * 2 1 3 31 31 H 1.09000 * 109.46969 * 90.02581 * 1 2 3 32 32 H 1.08996 * 109.46990 * 210.02449 * 1 2 3 33 33 H 1.09002 * 109.47357 * 330.02335 * 1 2 3 34 34 H 1.07998 * 119.98094 * 0.05213 * 5 4 3 35 35 H 1.07995 * 119.78889 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.75740 * 252.37456 * 11 10 8 37 37 H 1.09003 * 109.75271 * 13.10810 * 11 10 8 38 38 H 1.09001 * 110.35752 * 207.91805 * 14 12 11 39 39 H 1.08995 * 110.36359 * 330.12090 * 14 12 11 40 40 H 1.09001 * 110.36840 * 118.84002 * 15 14 12 41 41 H 1.08998 * 110.36398 * 241.15040 * 15 14 12 42 42 H 1.08997 * 109.75321 * 346.89719 * 18 10 8 43 43 H 1.09007 * 109.75000 * 107.62957 * 18 10 8 44 44 H 0.97000 * 120.00120 * 179.97438 * 23 22 20 45 45 H 1.07995 * 120.19317 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2498 1.0670 0.0000 4 6 3.5557 0.6930 0.0006 5 6 4.7620 1.4005 0.0004 6 6 5.9474 0.7278 0.0006 7 6 5.9680 -0.6729 0.0016 8 6 7.2582 -1.3904 0.0012 9 8 7.3428 -2.4886 -0.5135 10 7 8.3421 -0.8282 0.5716 11 6 8.2306 0.4410 1.3081 12 6 8.9730 0.2816 2.6467 13 1 8.8940 1.1737 3.2680 14 6 8.4110 -0.9730 3.3530 15 6 9.2840 -2.1381 2.8430 16 6 10.2937 -1.4821 1.8743 17 1 11.2637 -1.9790 1.8922 18 6 9.6613 -1.4733 0.4763 19 7 10.3777 -0.0730 2.3299 20 6 11.4919 0.7162 2.4338 21 1 12.4748 0.2698 2.4015 22 6 11.3581 2.0900 2.5806 23 7 10.1781 2.6552 2.4383 24 14 12.8529 3.1366 2.9803 25 1 14.0518 2.2668 3.0875 26 1 13.0611 4.1349 1.9009 27 1 12.6343 3.8401 4.2697 28 6 4.7727 -1.3909 0.0018 29 6 3.5678 -0.7122 0.0015 30 8 2.2734 -1.1010 -0.0045 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3634 0.8902 0.5135 34 1 4.7542 2.4804 0.0005 35 1 6.8766 1.2782 0.0009 36 1 8.6849 1.2445 0.7285 37 1 7.1808 0.6681 1.4940 38 1 8.5052 -0.8735 4.4344 39 1 7.3683 -1.1288 3.0766 40 1 9.8075 -2.6118 3.6735 41 1 8.6710 -2.8681 2.3143 42 1 9.5460 -2.4965 0.1187 43 1 10.2970 -0.9125 -0.2089 44 1 10.0845 3.6152 2.5413 45 1 4.7878 -2.4708 0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029348277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = 61.097588 kcal Electronic energy + Delta-G solvation = -30337.556038 eV Core-core repulsion = 26323.293084 eV Total energy + Delta-G solvation = -4014.262954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.39029 -40.42817 -38.38757 -37.24603 -34.97354 -33.92300 -32.61568 -31.85609 -30.88924 -30.64085 -29.30896 -28.47286 -26.30334 -24.18058 -24.11332 -23.12385 -22.70309 -21.75364 -20.19898 -19.69656 -18.79722 -18.43027 -17.48097 -17.01487 -16.71848 -15.87649 -15.50062 -15.42054 -14.78233 -14.47188 -14.31277 -14.06280 -13.84166 -13.66102 -13.63481 -13.46435 -13.07774 -12.99225 -12.82944 -12.47762 -12.34610 -11.86814 -11.80919 -11.74813 -11.45464 -11.30265 -11.05914 -10.90794 -10.82180 -10.62428 -10.40813 -10.08459 -9.89067 -9.69057 -9.62072 -9.54021 -8.96544 -8.73219 -8.53238 -8.13416 -6.90647 -5.91600 -3.25611 0.35776 1.13766 2.09679 2.25528 3.05354 3.31620 3.38899 3.40334 3.42731 3.61370 3.75668 4.36737 4.37948 4.67312 4.79034 4.86304 4.96698 5.01058 5.11770 5.17115 5.27297 5.27801 5.34684 5.62286 5.68997 5.75390 5.78207 5.84234 5.89347 5.95318 6.03486 6.05582 6.15548 6.22068 6.26442 6.34310 6.47579 6.50818 6.56788 6.58213 6.65997 6.84321 6.87540 7.16980 7.40354 7.44071 7.59886 7.93422 8.06411 8.51744 8.99572 9.61388 10.37637 11.22001 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.003227 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.932524 B = 8675.371605 C = 9654.113086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.245 3.755 3 N -0.481 5.481 4 C 0.041 3.959 5 C -0.070 4.070 6 C -0.090 4.090 7 C -0.095 4.095 8 C 0.553 3.447 9 O -0.556 6.556 10 N -0.580 5.580 11 C 0.086 3.914 12 C 0.168 3.832 13 H 0.121 0.879 14 C -0.137 4.137 15 C -0.125 4.125 16 C 0.134 3.866 17 H 0.080 0.920 18 C 0.103 3.897 19 N -0.584 5.584 20 C -0.223 4.223 21 H 0.078 0.922 22 C -0.003 4.003 23 N -0.916 5.916 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C -0.036 4.036 29 C -0.005 4.005 30 O -0.212 6.212 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.254 0.746 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.390 -4.734 -3.125 16.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.034 3.966 3 N -0.212 5.212 4 C -0.072 4.072 5 C -0.089 4.089 6 C -0.110 4.110 7 C -0.099 4.099 8 C 0.340 3.660 9 O -0.437 6.437 10 N -0.310 5.310 11 C -0.037 4.037 12 C 0.060 3.940 13 H 0.139 0.861 14 C -0.176 4.176 15 C -0.164 4.164 16 C 0.025 3.975 17 H 0.098 0.902 18 C -0.022 4.022 19 N -0.305 5.305 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.200 4.200 23 N -0.562 5.562 24 Si 0.743 3.257 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C -0.056 4.056 29 C -0.054 4.054 30 O -0.104 6.104 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.394 -4.427 -3.346 16.363 hybrid contribution 0.903 0.020 0.163 0.918 sum -14.490 -4.407 -3.183 15.477 Atomic orbital electron populations 1.20415 0.80868 1.05609 1.05154 1.26515 0.96667 0.78408 0.94966 1.70597 1.01062 1.28924 1.20622 1.20008 0.92140 0.91212 1.03807 1.20012 0.88145 1.00659 1.00080 1.21572 0.99392 0.93193 0.96801 1.19767 0.93004 0.93743 1.03375 1.17975 0.83419 0.85198 0.79375 1.90733 1.85125 1.20081 1.47717 1.48090 1.07559 1.24284 1.51079 1.23241 1.00248 0.84060 0.96117 1.21893 0.83530 0.96272 0.92322 0.86116 1.22642 0.97740 0.97405 0.99801 1.22493 0.97771 0.97366 0.98780 1.21905 0.96366 0.88230 0.90985 0.90184 1.22314 0.82538 0.97509 0.99789 1.45185 1.03311 1.07734 1.74258 1.19070 0.84951 0.87718 1.43395 0.90470 1.24798 0.97078 0.96233 1.01895 1.69806 1.21635 1.10030 1.54759 0.86051 0.81802 0.80235 0.77651 1.20514 1.21782 1.21693 1.19774 0.86164 1.00638 0.99033 1.20032 0.83600 0.94418 1.07378 1.84466 1.15309 1.36079 1.74512 0.88346 0.88862 0.87622 0.83985 0.82201 0.89369 0.90619 0.92691 0.93223 0.92674 0.92585 0.90415 0.91611 0.93536 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.25 2.78 8.23 -13.05 -0.11 2.67 16 3 N -0.48 -6.71 11.33 -8.63 -0.10 -6.81 16 4 C 0.04 0.60 7.24 -84.63 -0.61 -0.01 16 5 C -0.07 -0.97 10.03 -39.68 -0.40 -1.37 16 6 C -0.09 -1.32 7.34 -39.59 -0.29 -1.61 16 7 C -0.10 -1.52 5.44 -104.93 -0.57 -2.09 16 8 C 0.55 10.05 7.45 -12.43 -0.09 9.96 16 9 O -0.56 -11.33 16.14 5.30 0.09 -11.24 16 10 N -0.58 -10.67 2.26 -173.00 -0.39 -11.06 16 11 C 0.09 1.63 3.99 -3.22 -0.01 1.62 16 12 C 0.17 3.52 3.11 -65.66 -0.20 3.32 16 13 H 0.12 2.88 6.36 -51.93 -0.33 2.55 16 14 C -0.14 -2.53 6.18 -25.25 -0.16 -2.68 16 15 C -0.12 -2.23 6.18 -25.26 -0.16 -2.38 16 16 C 0.13 2.58 4.31 -65.88 -0.28 2.30 16 17 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 18 C 0.10 1.92 5.88 -3.45 -0.02 1.90 16 19 N -0.58 -13.26 2.81 -152.84 -0.43 -13.69 16 20 C -0.22 -5.62 10.37 -15.06 -0.16 -5.78 16 21 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 22 C 0.00 -0.08 5.42 -17.43 -0.09 -0.18 16 23 N -0.92 -23.59 10.43 55.49 0.58 -23.02 16 24 Si 0.91 20.59 29.56 -169.99 -5.03 15.57 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 C -0.04 -0.55 9.60 -39.12 -0.38 -0.92 16 29 C 0.00 -0.07 7.42 -38.70 -0.29 -0.35 16 30 O -0.21 -2.81 10.77 3.71 0.04 -2.77 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.16 2.34 5.23 -52.49 -0.27 2.06 16 36 H 0.09 1.87 7.46 -51.93 -0.39 1.49 16 37 H 0.08 1.29 4.61 -51.93 -0.24 1.05 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.87 7.84 -51.93 -0.41 0.46 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.98 7.83 -51.93 -0.41 0.57 16 42 H 0.08 1.40 7.08 -51.93 -0.37 1.04 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 45 H 0.14 2.06 7.90 -52.49 -0.41 1.64 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -29.87 358.86 -9.03 -38.90 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.76 Total: 4.30 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -3.44 Total: 4.42 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.34 Total: -54.57 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.13 Total: -14.02 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.87 -9.03 -38.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029348277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.994 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds