Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30009 * 124.84264 * 2 1 4 4 C 1.35842 * 108.86115 * 179.97438 * 3 2 1 5 5 C 1.39841 * 133.62686 * 179.97438 * 4 3 2 6 6 C 1.36294 * 120.03614 * 180.02562 * 5 4 3 7 7 C 1.40087 * 120.41589 * 359.97438 * 6 5 4 8 8 C 1.47628 * 119.92511 * 179.97438 * 7 6 5 9 9 O 1.21580 * 119.99822 * 209.30893 * 8 7 6 10 10 N 1.34773 * 120.00059 * 29.31632 * 8 7 6 11 11 C 1.47163 * 120.70894 * 5.74651 * 10 8 7 12 12 C 1.53889 * 108.02799 * 132.73841 * 11 10 8 13 13 H 1.08997 * 112.09278 * 182.55012 * 12 11 10 14 14 C 1.54553 * 107.82939 * 306.50753 * 12 11 10 15 15 C 1.54270 * 104.84738 * 89.07457 * 14 12 11 16 16 C 1.54541 * 104.85311 * 359.97438 * 15 14 12 17 17 H 1.09000 * 112.18828 * 146.41608 * 16 15 14 18 18 C 1.47159 * 120.70914 * 185.47291 * 10 8 7 19 19 N 1.48302 * 107.20975 * 58.36317 * 12 11 10 20 20 C 1.36941 * 128.07538 * 106.71929 * 19 12 11 21 21 H 1.07998 * 119.99763 * 165.13160 * 20 19 12 22 22 C 1.38807 * 119.99978 * 345.13469 * 20 19 12 23 23 N 1.31614 * 120.00175 * 350.75121 * 22 20 19 24 24 Si 1.86804 * 119.99990 * 170.74682 * 22 20 19 25 25 H 1.48505 * 109.46889 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46868 * 120.00070 * 24 22 20 27 27 H 1.48493 * 109.47480 * 240.00394 * 24 22 20 28 28 C 1.39436 * 120.15054 * 0.02562 * 7 6 5 29 29 C 1.38292 * 119.61453 * 359.97438 * 28 7 6 30 30 O 1.34146 * 124.83786 * 180.23672 * 2 1 3 31 31 H 1.09000 * 109.46969 * 90.02581 * 1 2 3 32 32 H 1.08996 * 109.46990 * 210.02449 * 1 2 3 33 33 H 1.09002 * 109.47357 * 330.02335 * 1 2 3 34 34 H 1.07998 * 119.98094 * 0.05213 * 5 4 3 35 35 H 1.07995 * 119.78889 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.75740 * 252.37456 * 11 10 8 37 37 H 1.09003 * 109.75271 * 13.10810 * 11 10 8 38 38 H 1.09001 * 110.35752 * 207.91805 * 14 12 11 39 39 H 1.08995 * 110.36359 * 330.12090 * 14 12 11 40 40 H 1.09001 * 110.36840 * 118.84002 * 15 14 12 41 41 H 1.08998 * 110.36398 * 241.15040 * 15 14 12 42 42 H 1.08997 * 109.75321 * 346.89719 * 18 10 8 43 43 H 1.09007 * 109.75000 * 107.62957 * 18 10 8 44 44 H 0.97000 * 120.00120 * 179.97438 * 23 22 20 45 45 H 1.07995 * 120.19317 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2498 1.0670 0.0000 4 6 3.5557 0.6930 0.0006 5 6 4.7620 1.4005 0.0004 6 6 5.9474 0.7278 0.0006 7 6 5.9680 -0.6729 0.0016 8 6 7.2582 -1.3904 0.0012 9 8 7.3428 -2.4886 -0.5135 10 7 8.3421 -0.8282 0.5716 11 6 8.2306 0.4410 1.3081 12 6 8.9730 0.2816 2.6467 13 1 8.8940 1.1737 3.2680 14 6 8.4110 -0.9730 3.3530 15 6 9.2840 -2.1381 2.8430 16 6 10.2937 -1.4821 1.8743 17 1 11.2637 -1.9790 1.8922 18 6 9.6613 -1.4733 0.4763 19 7 10.3777 -0.0730 2.3299 20 6 11.4919 0.7162 2.4338 21 1 12.4748 0.2698 2.4015 22 6 11.3581 2.0900 2.5806 23 7 10.1781 2.6552 2.4383 24 14 12.8529 3.1366 2.9803 25 1 14.0518 2.2668 3.0875 26 1 13.0611 4.1349 1.9009 27 1 12.6343 3.8401 4.2697 28 6 4.7727 -1.3909 0.0018 29 6 3.5678 -0.7122 0.0015 30 8 2.2734 -1.1010 -0.0045 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3634 0.8902 0.5135 34 1 4.7542 2.4804 0.0005 35 1 6.8766 1.2782 0.0009 36 1 8.6849 1.2445 0.7285 37 1 7.1808 0.6681 1.4940 38 1 8.5052 -0.8735 4.4344 39 1 7.3683 -1.1288 3.0766 40 1 9.8075 -2.6118 3.6735 41 1 8.6710 -2.8681 2.3143 42 1 9.5460 -2.4965 0.1187 43 1 10.2970 -0.9125 -0.2089 44 1 10.0845 3.6152 2.5413 45 1 4.7878 -2.4708 0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029348277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = 43.260292 kcal Electronic energy + Delta-G solvation = -30338.329521 eV Core-core repulsion = 26323.293084 eV Total energy + Delta-G solvation = -4015.036437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.41662 -41.89571 -39.79963 -38.57346 -36.00150 -35.50774 -34.32457 -32.89844 -32.11592 -31.93429 -31.04293 -29.50516 -27.82792 -25.76863 -25.60944 -24.37734 -23.90045 -22.78476 -21.59924 -21.23373 -20.39878 -19.68895 -18.74796 -18.12375 -18.01760 -17.34026 -17.02517 -16.82029 -16.50995 -15.71533 -15.57071 -15.43746 -15.18241 -14.86083 -14.77385 -14.68091 -14.41026 -14.07516 -13.87987 -13.63925 -13.55025 -13.36658 -13.28690 -13.11287 -12.86318 -12.80162 -12.60090 -12.54167 -12.26796 -11.97718 -11.82679 -11.67230 -11.48210 -11.43976 -11.15489 -11.05930 -10.65479 -9.99276 -9.81130 -9.56515 -8.68610 -7.83214 -5.17216 -0.74760 -0.00122 1.04525 1.26111 1.50390 1.53787 1.60939 1.76127 2.04044 2.50542 2.54413 2.73284 3.29515 3.35478 3.38085 3.50247 3.83510 3.86620 3.89877 4.09619 4.11724 4.19531 4.22374 4.33553 4.42158 4.48735 4.59261 4.63252 4.68039 4.71640 4.78397 4.81349 4.87008 4.96204 4.99996 5.04932 5.05695 5.07952 5.11719 5.19571 5.30865 5.35704 5.40858 5.55946 5.61776 5.81196 6.24240 6.44168 6.45366 7.05038 7.10606 7.74231 8.53448 9.28586 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.003227 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.932524 B = 8675.371605 C = 9654.113086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.262 3.738 3 N -0.512 5.512 4 C 0.035 3.965 5 C -0.070 4.070 6 C -0.087 4.087 7 C -0.113 4.113 8 C 0.558 3.442 9 O -0.578 6.578 10 N -0.581 5.581 11 C 0.105 3.895 12 C 0.162 3.838 13 H 0.091 0.909 14 C -0.129 4.129 15 C -0.115 4.115 16 C 0.130 3.870 17 H 0.088 0.912 18 C 0.108 3.892 19 N -0.602 5.602 20 C -0.233 4.233 21 H 0.075 0.925 22 C -0.048 4.048 23 N -0.931 5.931 24 Si 0.967 3.033 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.295 1.295 28 C -0.030 4.030 29 C -0.019 4.019 30 O -0.216 6.216 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.249 0.751 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.443 -5.396 -3.054 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 N -0.243 5.243 4 C -0.077 4.077 5 C -0.089 4.089 6 C -0.107 4.107 7 C -0.116 4.116 8 C 0.347 3.653 9 O -0.461 6.461 10 N -0.310 5.310 11 C -0.019 4.019 12 C 0.055 3.945 13 H 0.109 0.891 14 C -0.168 4.168 15 C -0.154 4.154 16 C 0.023 3.977 17 H 0.106 0.894 18 C -0.016 4.016 19 N -0.324 5.324 20 C -0.361 4.361 21 H 0.093 0.907 22 C -0.243 4.243 23 N -0.578 5.578 24 Si 0.797 3.203 25 H -0.199 1.199 26 H -0.224 1.224 27 H -0.222 1.222 28 C -0.050 4.050 29 C -0.069 4.069 30 O -0.108 6.108 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.177 0.823 35 H 0.174 0.826 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.458 -5.107 -3.277 18.482 hybrid contribution 1.368 0.202 0.104 1.386 sum -16.090 -4.904 -3.173 17.117 Atomic orbital electron populations 1.20839 0.76639 1.07443 1.07139 1.27808 0.98452 0.77251 0.91276 1.70657 1.00707 1.30006 1.22937 1.20281 0.92937 0.91431 1.03031 1.20161 0.87657 1.01503 0.99553 1.21466 0.99593 0.92652 0.96969 1.19556 0.92169 0.94105 1.05813 1.18216 0.83855 0.84830 0.78398 1.90712 1.85580 1.21173 1.48601 1.48048 1.07684 1.24057 1.51243 1.22929 1.00811 0.83478 0.94650 1.21837 0.83378 0.96221 0.93099 0.89127 1.22552 0.98303 0.96289 0.99654 1.22404 0.97260 0.96975 0.98723 1.22064 0.97391 0.86753 0.91519 0.89405 1.22195 0.82584 0.97712 0.99156 1.45336 1.03368 1.08867 1.74797 1.19280 0.85800 0.88263 1.42798 0.90701 1.25395 0.99071 0.97182 1.02633 1.69947 1.22658 1.09659 1.55539 0.85194 0.79760 0.78668 0.76672 1.19880 1.22402 1.22241 1.19761 0.86130 1.00793 0.98289 1.20051 0.84195 0.94494 1.08148 1.84496 1.14772 1.36913 1.74618 0.85983 0.86526 0.86180 0.82298 0.82600 0.92046 0.88688 0.92466 0.92122 0.91483 0.91865 0.89514 0.93008 0.94122 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.26 5.28 8.23 88.38 0.73 6.01 16 3 N -0.51 -13.35 11.33 -296.04 -3.35 -16.71 16 4 C 0.04 1.01 7.24 39.47 0.29 1.29 16 5 C -0.07 -1.89 10.03 22.20 0.22 -1.66 16 6 C -0.09 -2.52 7.34 22.27 0.16 -2.36 16 7 C -0.11 -3.55 5.44 -20.06 -0.11 -3.66 16 8 C 0.56 20.08 7.45 86.72 0.65 20.73 16 9 O -0.58 -23.27 16.14 -3.97 -0.06 -23.34 16 10 N -0.58 -21.33 2.26 -819.52 -1.85 -23.18 16 11 C 0.10 4.00 3.99 86.55 0.35 4.34 16 12 C 0.16 6.87 3.11 45.47 0.14 7.01 16 13 H 0.09 4.43 6.36 -2.39 -0.02 4.41 16 14 C -0.13 -4.64 6.18 31.55 0.20 -4.45 16 15 C -0.11 -3.92 6.18 31.55 0.20 -3.72 16 16 C 0.13 4.97 4.31 45.31 0.20 5.16 16 17 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 18 C 0.11 4.02 5.88 86.40 0.51 4.53 16 19 N -0.60 -27.54 2.81 -637.48 -1.79 -29.33 16 20 C -0.23 -11.84 10.37 84.03 0.87 -10.97 16 21 H 0.08 3.75 7.85 -2.91 -0.02 3.73 16 22 C -0.05 -2.47 5.42 84.86 0.46 -2.01 16 23 N -0.93 -49.03 10.43 21.65 0.23 -48.80 16 24 Si 0.97 42.88 29.56 68.60 2.03 44.91 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 27 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 28 C -0.03 -0.88 9.60 22.57 0.22 -0.66 16 29 C -0.02 -0.54 7.42 22.84 0.17 -0.37 16 30 O -0.22 -5.29 10.77 -9.63 -0.10 -5.39 16 31 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.16 4.61 5.23 -2.91 -0.02 4.60 16 36 H 0.06 2.70 7.46 -2.39 -0.02 2.68 16 37 H 0.10 3.24 4.61 -2.39 -0.01 3.23 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.04 7.84 -2.39 -0.02 2.02 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 2.08 7.83 -2.39 -0.02 2.07 16 42 H 0.09 3.08 7.08 -2.39 -0.02 3.06 16 43 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.25 12.93 8.31 -92.71 -0.77 12.16 16 45 H 0.15 4.12 7.90 -2.91 -0.02 4.10 16 Total: -1.00 -64.33 358.86 2.10 -62.23 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 1.03 Total: 20.12 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 5.98 Total: 19.50 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -6.77 Total: -118.02 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.17 Total: -28.73 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -64.33 2.10 -62.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029348277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.491 kcal (2) G-P(sol) polarization free energy of solvation -64.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds