Wall clock time and date at job start Sat Apr 11 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29874 * 124.83514 * 2 1 4 4 C 1.36123 * 108.76764 * 180.02562 * 3 2 1 5 5 C 1.39266 * 133.77003 * 180.02562 * 4 3 2 6 6 C 1.39201 * 119.46583 * 179.97438 * 5 4 3 7 7 C 1.47721 * 119.94622 * 179.97438 * 6 5 4 8 8 O 1.21568 * 119.99890 * 212.34964 * 7 6 5 9 9 N 1.34777 * 120.00199 * 32.35584 * 7 6 5 10 10 C 1.47169 * 120.70579 * 5.44219 * 9 7 6 11 11 C 1.55889 * 107.94827 * 132.41476 * 10 9 7 12 12 H 1.09004 * 112.45362 * 181.84594 * 11 10 9 13 13 C 1.54545 * 108.44104 * 307.12654 * 11 10 9 14 14 C 1.53735 * 104.95570 * 88.28935 * 13 11 10 15 15 C 1.54554 * 104.95253 * 0.02562 * 14 13 11 16 16 H 1.08994 * 112.18300 * 146.28235 * 15 14 13 17 17 C 1.47153 * 120.71177 * 185.41801 * 9 7 6 18 18 N 1.48310 * 104.35516 * 24.57640 * 15 14 13 19 19 C 1.36938 * 128.07962 * 139.08634 * 18 15 14 20 20 H 1.07995 * 119.99540 * 344.95898 * 19 18 15 21 21 C 1.38808 * 120.00180 * 164.95865 * 19 18 15 22 22 N 1.31614 * 120.00093 * 349.70840 * 21 19 18 23 23 Si 1.86797 * 119.99758 * 169.70684 * 21 19 18 24 24 H 1.48506 * 109.47082 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47169 * 300.00021 * 23 21 19 26 26 H 1.48506 * 109.47267 * 60.00142 * 23 21 19 27 27 C 1.40047 * 120.09927 * 0.25687 * 6 5 4 28 28 C 1.36532 * 120.46865 * 359.49726 * 27 6 5 29 29 C 1.38889 * 120.19336 * 0.48275 * 28 27 6 30 30 O 1.34244 * 124.83036 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47004 * 89.99487 * 1 2 3 32 32 H 1.08998 * 109.47285 * 210.00116 * 1 2 3 33 33 H 1.08999 * 109.47182 * 329.99959 * 1 2 3 34 34 H 1.07999 * 120.26564 * 359.97438 * 5 4 3 35 35 H 1.09007 * 109.74770 * 252.36875 * 10 9 7 36 36 H 1.08996 * 109.75236 * 13.10024 * 10 9 7 37 37 H 1.09005 * 110.36562 * 207.00807 * 13 11 10 38 38 H 1.08996 * 110.36780 * 329.21373 * 13 11 10 39 39 H 1.08987 * 110.42310 * 241.06668 * 14 13 11 40 40 H 1.08998 * 110.20493 * 118.81770 * 14 13 11 41 41 H 1.09007 * 109.75088 * 107.62618 * 17 9 7 42 42 H 1.09003 * 109.79134 * 346.92380 * 17 9 7 43 43 H 0.97005 * 119.99995 * 179.97438 * 22 21 19 44 44 H 1.07993 * 119.76126 * 179.74547 * 27 6 5 45 45 H 1.08003 * 119.89742 * 180.28280 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2488 1.0660 0.0000 4 6 3.5569 0.6893 -0.0006 5 6 4.7610 1.3890 -0.0004 6 6 5.9620 0.6852 -0.0006 7 6 7.2453 1.4167 -0.0010 8 8 8.2137 0.9449 -0.5645 9 7 7.3427 2.6071 0.6235 10 6 6.2178 3.1371 1.4105 11 6 6.7777 3.6234 2.7817 12 1 5.9959 4.0032 3.4395 13 6 7.5830 2.4682 3.4184 14 6 9.0107 2.6317 2.8722 15 6 8.9463 3.8722 1.9527 16 1 9.8741 4.4440 1.9674 17 6 8.5764 3.4042 0.5335 18 7 7.7976 4.6545 2.4705 19 6 7.7028 6.0114 2.6293 20 1 8.5930 6.6220 2.5987 21 6 6.4626 6.6018 2.8296 22 7 5.3638 5.8960 2.6666 23 14 6.3534 8.3980 3.3306 24 1 4.9273 8.7842 3.4805 25 1 7.0575 8.5951 4.6231 26 1 6.9884 9.2425 2.2871 27 6 5.9553 -0.7152 -0.0065 28 6 4.7753 -1.4020 -0.0017 29 6 3.5677 -0.7158 -0.0010 30 8 2.2737 -1.1019 -0.0005 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 4.7629 2.4690 -0.0001 35 1 5.7561 3.9692 0.8789 36 1 5.4812 2.3509 1.5759 37 1 7.5826 2.5591 4.5046 38 1 7.1675 1.5060 3.1189 39 1 9.3027 1.7505 2.3011 40 1 9.7096 2.8029 3.6909 41 1 8.4096 4.2698 -0.1078 42 1 9.3816 2.7933 0.1254 43 1 4.4971 6.3085 2.8069 44 1 6.8902 -1.2557 -0.0108 45 1 4.7809 -2.4820 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029352675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:27 Heat of formation + Delta-G solvation = 57.631767 kcal Electronic energy + Delta-G solvation = -30528.024767 eV Core-core repulsion = 26513.611524 eV Total energy + Delta-G solvation = -4014.413243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.34769 -40.30588 -38.35530 -37.15838 -34.96174 -33.90431 -32.58551 -31.80749 -31.25889 -30.05699 -29.27221 -28.30122 -26.35095 -24.39176 -24.00228 -23.19547 -22.39069 -21.65750 -20.38519 -19.66300 -18.82621 -18.15010 -17.28907 -16.97141 -16.87071 -15.95681 -15.42440 -15.42015 -14.80112 -14.60934 -14.13056 -14.06229 -13.70435 -13.58091 -13.44147 -13.39701 -13.02321 -12.94202 -12.76367 -12.52108 -12.36646 -11.83417 -11.79732 -11.67511 -11.43114 -11.34749 -11.09792 -10.88871 -10.79170 -10.53084 -10.40532 -10.10225 -9.87335 -9.64688 -9.61642 -9.51116 -8.87033 -8.73691 -8.49628 -8.10663 -6.85939 -5.87724 -3.21847 0.62824 0.82517 2.29379 2.33407 3.00492 3.35132 3.40561 3.41122 3.44355 3.62147 3.82714 4.38676 4.40250 4.66961 4.80153 4.98989 5.02357 5.05878 5.15295 5.23707 5.25549 5.30557 5.38214 5.64306 5.68758 5.71812 5.77766 5.86042 5.91397 6.01579 6.06051 6.07937 6.16831 6.22400 6.29442 6.36921 6.44778 6.52827 6.56970 6.62697 6.69576 6.87023 6.91090 7.20181 7.42818 7.51258 7.62976 7.98317 8.10380 8.56520 9.02636 9.65050 10.41628 11.25894 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.003989 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.562298 B = 7017.100432 C = 8792.590924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.239 3.761 3 N -0.467 5.467 4 C 0.014 3.986 5 C -0.021 4.021 6 C -0.124 4.124 7 C 0.553 3.447 8 O -0.557 6.557 9 N -0.581 5.581 10 C 0.090 3.910 11 C 0.169 3.831 12 H 0.120 0.880 13 C -0.135 4.135 14 C -0.123 4.123 15 C 0.134 3.866 16 H 0.078 0.922 17 C 0.102 3.898 18 N -0.585 5.585 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.001 4.001 22 N -0.914 5.914 23 Si 0.912 3.088 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.284 1.284 27 C -0.041 4.041 28 C -0.104 4.104 29 C 0.023 3.977 30 O -0.216 6.216 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.156 0.844 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.256 0.744 44 H 0.149 0.851 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -13.948 -3.531 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.027 3.973 3 N -0.197 5.197 4 C -0.097 4.097 5 C -0.040 4.040 6 C -0.128 4.128 7 C 0.341 3.659 8 O -0.438 6.438 9 N -0.311 5.311 10 C -0.033 4.033 11 C 0.061 3.939 12 H 0.137 0.863 13 C -0.174 4.174 14 C -0.162 4.162 15 C 0.025 3.975 16 H 0.096 0.904 17 C -0.022 4.022 18 N -0.306 5.306 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.198 4.198 22 N -0.560 5.560 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.060 4.060 28 C -0.123 4.123 29 C -0.027 4.027 30 O -0.108 6.108 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.125 0.875 34 H 0.174 0.826 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.166 0.834 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.075 -13.285 -3.763 15.085 hybrid contribution -0.046 0.296 0.209 0.365 sum -6.121 -12.989 -3.554 14.792 Atomic orbital electron populations 1.20403 0.80851 1.05621 1.05078 1.26480 0.96642 0.78202 0.95980 1.70679 1.00821 1.28775 1.19379 1.19694 0.92042 0.91109 1.06857 1.21022 0.87865 1.01553 0.93569 1.19866 0.93239 0.94176 1.05570 1.18038 0.87106 0.81221 0.79533 1.90720 1.38267 1.67963 1.46821 1.48124 1.16828 1.18076 1.48083 1.23478 0.86983 0.97814 0.95040 1.22288 0.92958 0.86130 0.92516 0.86285 1.22502 0.96309 0.98904 0.99673 1.22374 0.97138 0.97947 0.98782 1.21988 0.92909 0.91875 0.90685 0.90359 1.22417 0.85878 0.94185 0.99699 1.45196 1.11684 1.01597 1.72106 1.18963 0.92803 0.80523 1.43246 0.90614 1.24801 0.95224 0.97998 1.01818 1.69807 0.96887 1.35721 1.53606 0.86215 0.76656 0.84385 0.78561 1.21586 1.21202 1.21095 1.20747 0.97730 0.92509 0.95035 1.19474 0.86935 1.00332 1.05539 1.20512 0.83786 0.94561 1.03886 1.84451 1.15328 1.36388 1.74637 0.88454 0.88978 0.87520 0.82630 0.89392 0.91313 0.92677 0.93166 0.92532 0.92663 0.91653 0.90448 0.93383 0.83361 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.00 0.38 -0.02 16 2 C 0.24 2.90 8.23 -13.11 -0.11 2.80 16 3 N -0.47 -7.28 11.34 -8.72 -0.10 -7.38 16 4 C 0.01 0.23 7.23 -84.72 -0.61 -0.39 16 5 C -0.02 -0.34 7.45 -38.84 -0.29 -0.63 16 6 C -0.12 -2.00 5.35 -104.99 -0.56 -2.57 16 7 C 0.55 10.22 7.42 -12.39 -0.09 10.13 16 8 O -0.56 -11.34 16.20 5.31 0.09 -11.25 16 9 N -0.58 -11.07 2.29 -171.38 -0.39 -11.47 16 10 C 0.09 1.81 4.13 -2.13 -0.01 1.80 16 11 C 0.17 3.68 3.21 -64.56 -0.21 3.47 16 12 H 0.12 2.95 6.39 -51.93 -0.33 2.61 16 13 C -0.13 -2.54 6.19 -25.54 -0.16 -2.69 16 14 C -0.12 -2.22 6.17 -25.53 -0.16 -2.38 16 15 C 0.13 2.64 4.28 -65.63 -0.28 2.36 16 16 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 17 C 0.10 1.97 5.94 -3.19 -0.02 1.95 16 18 N -0.58 -13.64 2.78 -151.35 -0.42 -14.06 16 19 C -0.23 -5.86 10.36 -15.06 -0.16 -6.02 16 20 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 21 C 0.00 -0.03 5.41 -17.43 -0.09 -0.13 16 22 N -0.91 -24.40 10.41 55.49 0.58 -23.82 16 23 Si 0.91 20.98 29.57 -169.99 -5.03 15.95 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C -0.04 -0.56 9.52 -39.52 -0.38 -0.93 16 28 C -0.10 -1.27 9.99 -39.96 -0.40 -1.67 16 29 C 0.02 0.33 7.43 -38.49 -0.29 0.05 16 30 O -0.22 -2.81 10.77 3.79 0.04 -2.77 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.16 2.72 5.58 -52.49 -0.29 2.43 16 35 H 0.09 2.02 7.44 -51.92 -0.39 1.63 16 36 H 0.07 1.29 4.76 -51.93 -0.25 1.04 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.89 7.88 -51.93 -0.41 0.48 16 39 H 0.06 0.99 7.85 -51.94 -0.41 0.58 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 42 H 0.08 1.42 7.08 -51.93 -0.37 1.05 16 43 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.15 1.79 7.94 -52.49 -0.42 1.37 16 45 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -30.64 359.65 -9.03 -39.67 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.79 Total: 4.58 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -3.43 Total: 5.13 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.33 Total: -56.73 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.13 Total: -14.02 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.64 -9.03 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029352675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.299 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds