Wall clock time and date at job start Sat Apr 11 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30090 * 124.88310 * 2 1 4 4 C 1.35576 * 108.84004 * 179.77671 * 3 2 1 5 5 C 1.40288 * 106.62143 * 0.40852 * 4 3 2 6 6 C 1.38596 * 119.92281 * 179.78913 * 5 4 3 7 7 C 1.38206 * 120.21400 * 359.72639 * 6 5 4 8 8 C 1.38187 * 120.67640 * 0.02562 * 7 6 5 9 9 C 1.39363 * 120.24218 * 0.02562 * 8 7 6 10 10 C 1.47435 * 120.29884 * 179.97438 * 9 8 7 11 11 O 1.21597 * 119.99792 * 212.00607 * 10 9 8 12 12 N 1.34774 * 120.00012 * 32.01043 * 10 9 8 13 13 C 1.47172 * 120.70828 * 3.74964 * 12 10 9 14 14 C 1.55886 * 107.94750 * 132.45228 * 13 12 10 15 15 H 1.09004 * 112.45486 * 181.84502 * 14 13 12 16 16 C 1.54547 * 108.44783 * 307.13153 * 14 13 12 17 17 C 1.53733 * 104.95266 * 88.28804 * 16 14 13 18 18 C 1.54542 * 104.95705 * 0.02562 * 17 16 14 19 19 H 1.09000 * 112.18584 * 146.28211 * 18 17 16 20 20 C 1.47158 * 120.71000 * 183.77114 * 12 10 9 21 21 N 1.48308 * 104.35762 * 24.57617 * 18 17 16 22 22 C 1.36935 * 128.07948 * 139.08145 * 21 18 17 23 23 H 1.07999 * 119.99890 * 344.94402 * 22 21 18 24 24 C 1.38817 * 120.00041 * 164.94121 * 22 21 18 25 25 N 1.31615 * 120.00090 * 350.74309 * 24 22 21 26 26 Si 1.86801 * 119.99656 * 170.74734 * 24 22 21 27 27 H 1.48500 * 109.47006 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.47000 * 299.99598 * 26 24 22 29 29 H 1.48496 * 109.47566 * 59.99746 * 26 24 22 30 30 O 1.34136 * 124.87909 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.46989 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46543 * 299.98387 * 1 2 3 33 33 H 1.08999 * 109.46931 * 59.97833 * 1 2 3 34 34 H 1.07998 * 119.89135 * 179.74474 * 6 5 4 35 35 H 1.08004 * 119.66627 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.88166 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.74452 * 252.41055 * 13 12 10 38 38 H 1.08997 * 109.74689 * 13.09327 * 13 12 10 39 39 H 1.08991 * 110.36440 * 207.00645 * 16 14 13 40 40 H 1.09004 * 110.35957 * 329.21387 * 16 14 13 41 41 H 1.09001 * 110.41839 * 241.06980 * 17 16 14 42 42 H 1.08994 * 110.20300 * 118.82439 * 17 16 14 43 43 H 1.08996 * 109.75273 * 107.58849 * 20 12 10 44 44 H 1.09000 * 109.79127 * 346.87302 * 20 12 10 45 45 H 0.97002 * 120.00215 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2510 1.0672 0.0000 4 6 3.5540 0.6925 0.0050 5 6 3.5682 -0.7103 -0.0014 6 6 4.7763 -1.3895 -0.0027 7 6 5.9678 -0.6892 -0.0035 8 6 5.9735 0.6926 -0.0023 9 6 4.7724 1.3994 0.0001 10 6 4.7769 2.8738 0.0018 11 8 3.8865 3.4838 0.5619 12 7 5.7679 3.5453 -0.6173 13 6 6.8081 2.8253 -1.3694 14 6 6.9733 3.5262 -2.7519 15 1 7.7083 3.0295 -3.3854 16 6 5.5827 3.6266 -3.4187 17 6 4.9940 4.9528 -2.9108 18 6 6.0794 5.5408 -1.9810 19 1 6.1063 6.6299 -2.0171 20 6 5.8333 5.0142 -0.5555 21 7 7.3440 4.9329 -2.4615 22 6 8.5667 5.5318 -2.6080 23 1 8.6451 6.6089 -2.5978 24 6 9.7054 4.7545 -2.7695 25 7 9.6416 3.4507 -2.6009 26 14 11.3283 5.5589 -3.2261 27 1 12.3821 4.5187 -3.3382 28 1 11.1846 6.2595 -4.5276 29 1 11.7082 6.5380 -2.1762 30 8 2.2741 -1.1004 -0.0005 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5136 0.8902 33 1 -0.3633 0.5142 -0.8898 34 1 4.7867 -2.4694 -0.0035 35 1 6.9042 -1.2275 -0.0041 36 1 6.9121 1.2269 -0.0025 37 1 7.7486 2.8569 -0.8194 38 1 6.5037 1.7895 -1.5193 39 1 5.6832 3.6503 -4.5037 40 1 4.9551 2.7888 -3.1148 41 1 4.0745 4.7722 -2.3541 42 1 4.8061 5.6260 -3.7471 43 1 6.6519 5.3194 0.0962 44 1 4.8919 5.4098 -0.1742 45 1 10.4374 2.9076 -2.7134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029602895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:30 Heat of formation + Delta-G solvation = 62.345944 kcal Electronic energy + Delta-G solvation = -30784.887181 eV Core-core repulsion = 26770.678359 eV Total energy + Delta-G solvation = -4014.208821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.30540 -40.16808 -38.21256 -37.19839 -34.86099 -33.79344 -32.57143 -31.73322 -31.25364 -30.01249 -29.25245 -28.23444 -26.26589 -24.19235 -24.08199 -23.10413 -22.56029 -21.81444 -19.92301 -19.62396 -18.72599 -18.29314 -17.29068 -16.91378 -16.64615 -15.79576 -15.48156 -15.35212 -15.18586 -14.59340 -14.10085 -13.83494 -13.67589 -13.55671 -13.41430 -13.19810 -12.97672 -12.90288 -12.72334 -12.31930 -12.23611 -11.86001 -11.76189 -11.68215 -11.38397 -11.28358 -11.04103 -10.86320 -10.78393 -10.50546 -10.35797 -10.08533 -9.83483 -9.62910 -9.54942 -9.34509 -8.88395 -8.62557 -8.46268 -8.02178 -6.83928 -5.88152 -3.21735 0.41372 1.09680 2.37773 2.39415 3.08010 3.34536 3.39691 3.40441 3.49744 3.71991 3.87497 4.39605 4.47369 4.74291 4.85459 4.92009 5.04432 5.12434 5.15116 5.21750 5.28939 5.30927 5.46065 5.68390 5.72727 5.78068 5.80268 5.85055 5.92970 6.01067 6.10999 6.14082 6.20304 6.20977 6.33715 6.41166 6.53498 6.57422 6.61698 6.66403 6.72244 6.90615 6.96291 7.23651 7.45572 7.61623 7.63610 8.06445 8.12028 8.72013 9.03082 9.64947 10.42523 11.25462 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018408 B = 0.003536 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.740949 B = 7917.138951 C = 8748.919122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.238 3.762 3 N -0.457 5.457 4 C 0.070 3.930 5 C -0.006 4.006 6 C -0.076 4.076 7 C -0.100 4.100 8 C -0.087 4.087 9 C -0.067 4.067 10 C 0.549 3.451 11 O -0.538 6.538 12 N -0.585 5.585 13 C 0.088 3.912 14 C 0.168 3.832 15 H 0.121 0.879 16 C -0.134 4.134 17 C -0.123 4.123 18 C 0.134 3.866 19 H 0.078 0.922 20 C 0.105 3.895 21 N -0.586 5.586 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.003 4.003 25 N -0.916 5.916 26 Si 0.912 3.088 27 H -0.290 1.290 28 H -0.286 1.286 29 H -0.285 1.285 30 O -0.216 6.216 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.158 0.842 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.951 -10.732 3.516 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.027 3.973 3 N -0.186 5.186 4 C -0.043 4.043 5 C -0.056 4.056 6 C -0.095 4.095 7 C -0.118 4.118 8 C -0.107 4.107 9 C -0.071 4.071 10 C 0.336 3.664 11 O -0.417 6.417 12 N -0.316 5.316 13 C -0.035 4.035 14 C 0.061 3.939 15 H 0.138 0.862 16 C -0.173 4.173 17 C -0.163 4.163 18 C 0.026 3.974 19 H 0.096 0.904 20 C -0.020 4.020 21 N -0.307 5.307 22 C -0.351 4.351 23 H 0.094 0.906 24 C -0.200 4.200 25 N -0.563 5.563 26 Si 0.743 3.257 27 H -0.216 1.216 28 H -0.212 1.212 29 H -0.211 1.211 30 O -0.109 6.109 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.155 0.845 35 H 0.166 0.834 36 H 0.176 0.824 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.329 -9.792 3.762 16.188 hybrid contribution 1.197 -0.426 -0.203 1.287 sum -11.131 -10.218 3.560 15.524 Atomic orbital electron populations 1.20379 0.80880 1.04873 1.05633 1.26661 0.96770 0.78269 0.95562 1.70678 1.00855 1.28228 1.18847 1.19472 0.91399 0.90556 1.02906 1.20205 0.84004 0.94205 1.07199 1.19984 0.87286 1.00273 1.01922 1.21003 0.97317 0.93807 0.99714 1.21871 0.98034 0.94494 0.96283 1.19272 0.90378 0.94146 1.03334 1.17954 0.82156 0.86247 0.80008 1.90755 1.36156 1.69028 1.45728 1.48085 1.26052 1.07553 1.49947 1.23504 0.89763 0.94604 0.95669 1.22313 0.92381 0.86898 0.92339 0.86152 1.22490 0.98680 0.96519 0.99634 1.22365 0.97877 0.97221 0.98787 1.21988 0.87815 0.96734 0.90875 0.90436 1.22362 1.01156 0.78933 0.99526 1.45198 1.04566 1.07061 1.73828 1.18984 0.82076 0.90995 1.43067 0.90649 1.24793 0.97439 0.95839 1.01924 1.69797 1.28434 1.03679 1.54384 0.86199 0.83032 0.78046 0.78444 1.21610 1.21240 1.21144 1.84462 1.15173 1.36312 1.74917 0.89130 0.87983 0.87978 0.84540 0.83444 0.82420 0.89518 0.91073 0.92754 0.93319 0.92552 0.92733 0.91779 0.90580 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.01 0.38 -0.07 16 2 C 0.24 3.17 8.24 -13.01 -0.11 3.06 16 3 N -0.46 -8.02 11.06 -8.48 -0.09 -8.11 16 4 C 0.07 1.23 6.82 -84.45 -0.58 0.66 16 5 C -0.01 -0.09 7.42 -38.68 -0.29 -0.38 16 6 C -0.08 -0.88 10.05 -39.46 -0.40 -1.28 16 7 C -0.10 -1.15 10.00 -39.61 -0.40 -1.55 16 8 C -0.09 -1.27 7.39 -39.18 -0.29 -1.56 16 9 C -0.07 -1.20 5.42 -104.74 -0.57 -1.76 16 10 C 0.55 11.19 7.44 -12.52 -0.09 11.10 16 11 O -0.54 -12.44 16.08 5.28 0.08 -12.35 16 12 N -0.58 -11.62 2.29 -171.48 -0.39 -12.01 16 13 C 0.09 1.74 4.15 -2.13 -0.01 1.73 16 14 C 0.17 3.67 3.22 -64.56 -0.21 3.46 16 15 H 0.12 2.93 6.35 -51.93 -0.33 2.60 16 16 C -0.13 -2.62 6.19 -25.54 -0.16 -2.78 16 17 C -0.12 -2.35 6.17 -25.54 -0.16 -2.51 16 18 C 0.13 2.74 4.28 -65.63 -0.28 2.46 16 19 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 20 C 0.10 2.09 5.94 -3.19 -0.02 2.08 16 21 N -0.59 -13.74 2.78 -151.35 -0.42 -14.16 16 22 C -0.22 -5.74 10.37 -15.06 -0.16 -5.89 16 23 H 0.08 1.91 7.85 -52.49 -0.41 1.49 16 24 C 0.00 -0.08 5.42 -17.43 -0.09 -0.18 16 25 N -0.92 -23.81 10.41 55.49 0.58 -23.23 16 26 Si 0.91 20.76 29.56 -169.99 -5.03 15.74 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 O -0.22 -2.95 10.77 3.74 0.04 -2.91 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.16 2.30 5.46 -52.49 -0.29 2.02 16 37 H 0.09 1.90 7.52 -51.93 -0.39 1.51 16 38 H 0.07 1.26 4.58 -51.93 -0.24 1.03 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.93 7.88 -51.93 -0.41 0.52 16 41 H 0.06 1.08 7.86 -51.93 -0.41 0.67 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.08 1.50 7.09 -51.93 -0.37 1.13 16 45 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -32.27 359.30 -9.01 -41.28 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.78 Total: 3.77 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -3.42 Total: 6.58 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.33 Total: -57.52 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.13 Total: -15.26 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.27 -9.01 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029602895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.626 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds