Wall clock time and date at job start Sat Apr 11 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30019 * 124.84240 * 2 1 4 4 C 1.35839 * 108.85891 * 179.97438 * 3 2 1 5 5 C 1.39842 * 133.62150 * 179.97438 * 4 3 2 6 6 C 1.36288 * 120.04027 * 180.02562 * 5 4 3 7 7 C 1.40085 * 120.41010 * 359.93695 * 6 5 4 8 8 C 1.47626 * 119.92366 * 180.02562 * 7 6 5 9 9 O 1.21579 * 120.00330 * 24.98029 * 8 7 6 10 10 N 1.34780 * 120.00047 * 204.98518 * 8 7 6 11 11 C 1.46746 * 125.32896 * 5.15236 * 10 8 7 12 12 C 1.54096 * 106.63561 * 161.58325 * 11 10 8 13 13 H 1.08997 * 113.49732 * 151.36544 * 12 11 10 14 14 C 1.53971 * 109.44712 * 278.64442 * 12 11 10 15 15 N 1.46775 * 106.62586 * 138.17569 * 14 12 11 16 16 C 1.36938 * 125.33441 * 161.50081 * 15 14 12 17 17 H 1.08004 * 120.00060 * 5.01219 * 16 15 14 18 18 C 1.38810 * 119.99785 * 185.01065 * 16 15 14 19 19 N 1.31621 * 120.00259 * 354.94921 * 18 16 15 20 20 Si 1.86805 * 119.99974 * 174.94869 * 18 16 15 21 21 H 1.48502 * 109.47151 * 94.99715 * 20 18 16 22 22 H 1.48495 * 109.47235 * 214.99892 * 20 18 16 23 23 H 1.48503 * 109.46944 * 335.00223 * 20 18 16 24 24 C 1.48229 * 109.51743 * 341.52373 * 15 14 12 25 25 C 1.53725 * 107.14167 * 0.47597 * 24 15 14 26 26 H 1.08999 * 112.56694 * 140.21165 * 25 24 15 27 27 C 1.46640 * 125.32893 * 185.45419 * 10 8 7 28 28 C 1.39431 * 120.15201 * 0.09364 * 7 6 5 29 29 C 1.38281 * 119.61697 * 359.94071 * 28 7 6 30 30 O 1.34143 * 124.84097 * 179.97438 * 2 1 3 31 31 H 1.09007 * 109.46952 * 270.03609 * 1 2 3 32 32 H 1.09000 * 109.47393 * 30.03698 * 1 2 3 33 33 H 1.08995 * 109.46937 * 150.03971 * 1 2 3 34 34 H 1.08000 * 119.97720 * 359.77036 * 5 4 3 35 35 H 1.07998 * 119.78994 * 179.97438 * 6 5 4 36 36 H 1.08993 * 110.00781 * 281.01415 * 11 10 8 37 37 H 1.09008 * 110.00782 * 42.38182 * 11 10 8 38 38 H 1.09001 * 110.02226 * 257.46616 * 14 12 11 39 39 H 1.08998 * 110.02513 * 18.88187 * 14 12 11 40 40 H 0.96997 * 119.99978 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.30024 * 241.03227 * 24 15 14 42 42 H 1.09004 * 110.03621 * 119.77047 * 24 15 14 43 43 H 1.08993 * 109.76654 * 300.44163 * 27 10 8 44 44 H 1.09003 * 109.75857 * 61.16259 * 27 10 8 45 45 H 1.08004 * 120.19115 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2498 1.0671 0.0000 4 6 3.5557 0.6931 0.0006 5 6 4.7619 1.4006 0.0004 6 6 5.9473 0.7281 0.0006 7 6 5.9680 -0.6726 0.0024 8 6 7.2582 -1.3900 0.0032 9 8 8.2534 -0.8509 0.4470 10 7 7.3329 -2.6428 -0.4883 11 6 6.2369 -3.3627 -1.1470 12 6 6.8805 -4.5181 -1.9379 13 1 6.2263 -5.3820 -2.0550 14 6 7.4189 -3.9845 -3.2781 15 7 8.7265 -4.6174 -3.4873 16 6 9.3798 -4.7078 -4.6874 17 1 8.9718 -4.2231 -5.5621 18 6 10.5662 -5.4224 -4.7797 19 7 11.1154 -5.9290 -3.6961 20 14 11.3835 -5.6651 -6.4418 21 1 12.4135 -4.6147 -6.6451 22 1 12.0256 -7.0033 -6.4870 23 1 10.3612 -5.5700 -7.5147 24 6 9.2330 -5.1456 -2.1982 25 6 8.1717 -4.8312 -1.1314 26 1 8.0375 -5.6473 -0.4215 27 6 8.5203 -3.5021 -0.4429 28 6 4.7728 -1.3906 0.0019 29 6 3.5679 -0.7121 0.0010 30 8 2.2733 -1.1010 0.0005 31 1 -0.3633 0.0006 1.0277 32 1 -0.3634 0.8896 -0.5144 33 1 -0.3633 -0.8903 -0.5132 34 1 4.7540 2.4806 -0.0041 35 1 6.8765 1.2786 0.0000 36 1 5.5478 -3.7571 -0.4003 37 1 5.7081 -2.6953 -1.8275 38 1 6.7399 -4.2542 -4.0870 39 1 7.5317 -2.9014 -3.2303 40 1 11.9447 -6.4280 -3.7606 41 1 10.1743 -4.6629 -1.9354 42 1 9.3780 -6.2237 -2.2674 43 1 9.3445 -3.0199 -0.9684 44 1 8.8020 -3.6869 0.5937 45 1 4.7880 -2.4706 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048875384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:33 Heat of formation + Delta-G solvation = 52.569870 kcal Electronic energy + Delta-G solvation = -29409.755730 eV Core-core repulsion = 25395.122986 eV Total energy + Delta-G solvation = -4014.632744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.59839 -40.58134 -38.71543 -37.47159 -35.28439 -34.98154 -32.48495 -31.99042 -31.29851 -30.09977 -29.72821 -28.60438 -25.71890 -25.65321 -23.89698 -23.45703 -22.40183 -21.98209 -20.24702 -19.93558 -19.44593 -18.33753 -17.35551 -17.26851 -17.19809 -16.60205 -16.03484 -15.54169 -14.94903 -14.72494 -14.47319 -14.34272 -14.03311 -13.72476 -13.64163 -13.57797 -13.29858 -13.06142 -12.96940 -12.64914 -12.58840 -12.19019 -11.95861 -11.81315 -11.65039 -11.59888 -11.38367 -10.94211 -10.82575 -10.80363 -10.42645 -10.14886 -10.05700 -9.94753 -9.91850 -9.67832 -9.17783 -8.77445 -8.63182 -8.45804 -6.86592 -5.75584 -3.08232 0.09856 0.90862 1.86581 2.07799 2.76113 3.00827 3.38933 3.39342 3.44443 3.46201 3.50651 4.12003 4.30781 4.45990 4.58489 4.61591 4.69471 4.75336 4.84439 4.92328 4.96016 5.02211 5.15123 5.19883 5.35256 5.47004 5.53396 5.58490 5.60252 5.64446 5.70862 5.79837 5.87052 5.87999 5.97232 6.06255 6.19904 6.24943 6.29184 6.45632 6.57416 6.63324 6.79079 7.23878 7.45918 7.53694 7.58106 7.77031 8.14252 8.20877 9.17198 9.78896 10.43074 11.36652 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.002570 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.989717 B =10892.345598 C =11347.090551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.252 3.748 3 N -0.484 5.484 4 C 0.042 3.958 5 C -0.070 4.070 6 C -0.064 4.064 7 C -0.097 4.097 8 C 0.573 3.427 9 O -0.531 6.531 10 N -0.600 5.600 11 C 0.103 3.897 12 C -0.110 4.110 13 H 0.101 0.899 14 C 0.146 3.854 15 N -0.604 5.604 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.187 3.813 25 C -0.124 4.124 26 H 0.089 0.911 27 C 0.118 3.882 28 C -0.068 4.068 29 C -0.001 4.001 30 O -0.210 6.210 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.017 0.983 40 H 0.253 0.747 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.765 8.847 10.138 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.042 3.958 3 N -0.214 5.214 4 C -0.070 4.070 5 C -0.089 4.089 6 C -0.084 4.084 7 C -0.100 4.100 8 C 0.361 3.639 9 O -0.409 6.409 10 N -0.333 5.333 11 C -0.020 4.020 12 C -0.129 4.129 13 H 0.119 0.881 14 C 0.019 3.981 15 N -0.331 5.331 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.062 3.938 25 C -0.143 4.143 26 H 0.108 0.892 27 C -0.003 4.003 28 C -0.087 4.087 29 C -0.051 4.051 30 O -0.101 6.101 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.160 0.840 35 H 0.167 0.833 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.236 9.699 10.308 24.695 hybrid contribution 0.656 -0.871 -0.864 1.391 sum -19.580 8.828 9.444 23.463 Atomic orbital electron populations 1.20455 0.80688 1.05799 1.05303 1.26579 0.96736 0.78296 0.94238 1.70624 1.00937 1.28940 1.20929 1.20037 0.92228 0.91312 1.03452 1.19982 0.88158 1.00586 1.00158 1.20857 0.98665 0.92453 0.96397 1.19741 0.92068 0.94240 1.03973 1.17584 0.87663 0.80026 0.78579 1.90809 1.36574 1.66092 1.47434 1.48149 1.14552 1.13513 1.57044 1.22350 0.89652 0.94529 0.95451 1.22996 0.96644 0.96731 0.96556 0.88068 1.21218 0.88487 0.95272 0.93077 1.44589 1.16448 1.66965 1.05088 1.19044 1.03558 1.27061 0.86040 0.90481 1.24804 0.97978 1.00118 0.97406 1.69938 1.20290 1.40801 1.25884 0.86111 0.79258 0.77307 0.83162 1.21662 1.21624 1.20656 1.21342 0.91848 0.99006 0.81559 1.23163 0.97312 0.95456 0.98410 0.89245 1.22055 0.87738 0.90026 1.00520 1.20632 0.86720 1.01582 0.99726 1.20056 0.83717 0.94385 1.06973 1.84492 1.15200 1.36085 1.74367 0.88187 0.87538 0.88652 0.83970 0.83286 0.91416 0.90430 0.94591 0.96564 0.93675 0.93313 0.92774 0.90236 0.91831 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.51 36.00 0.38 0.12 16 2 C 0.25 2.37 8.23 -13.05 -0.11 2.26 16 3 N -0.48 -5.71 11.33 -8.64 -0.10 -5.81 16 4 C 0.04 0.52 7.24 -84.63 -0.61 -0.09 16 5 C -0.07 -0.78 10.03 -39.68 -0.40 -1.18 16 6 C -0.06 -0.76 9.51 -39.59 -0.38 -1.14 16 7 C -0.10 -1.28 5.68 -104.93 -0.60 -1.88 16 8 C 0.57 9.20 7.62 -12.43 -0.09 9.11 16 9 O -0.53 -10.21 16.90 5.30 0.09 -10.12 16 10 N -0.60 -9.29 3.30 -173.47 -0.57 -9.86 16 11 C 0.10 1.33 4.23 -3.34 -0.01 1.32 16 12 C -0.11 -1.69 4.17 -88.26 -0.37 -2.06 16 13 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 14 C 0.15 2.88 6.49 -3.39 -0.02 2.86 16 15 N -0.60 -14.95 3.42 -170.57 -0.58 -15.53 16 16 C -0.23 -6.29 10.24 -15.06 -0.15 -6.45 16 17 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 18 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 19 N -0.92 -26.56 10.28 55.49 0.57 -25.99 16 20 Si 0.91 21.97 29.56 -169.99 -5.02 16.94 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.19 4.29 4.85 -2.71 -0.01 4.28 16 25 C -0.12 -2.11 3.97 -88.60 -0.35 -2.46 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 27 C 0.12 2.01 6.21 -3.61 -0.02 1.99 16 28 C -0.07 -0.80 8.17 -39.12 -0.32 -1.12 16 29 C 0.00 -0.02 7.42 -38.71 -0.29 -0.30 16 30 O -0.21 -2.31 10.77 3.69 0.04 -2.27 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.15 1.68 7.83 -52.49 -0.41 1.26 16 36 H 0.07 0.69 6.37 -51.93 -0.33 0.36 16 37 H 0.08 0.96 6.96 -51.92 -0.36 0.60 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.02 0.34 7.72 -51.93 -0.40 -0.06 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.05 1.26 6.91 -51.93 -0.36 0.90 16 42 H 0.05 1.38 7.27 -51.93 -0.38 1.00 16 43 H 0.08 1.61 7.30 -51.93 -0.38 1.23 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.16 1.58 4.39 -52.48 -0.23 1.35 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -34.19 362.88 -9.34 -43.53 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.78 Total: -1.33 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -3.45 Total: 4.98 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.68 Total: -57.20 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.13 Total: -12.39 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.19 -9.34 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048875384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.099 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds