Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29872 * 124.83458 * 2 1 4 4 C 1.36123 * 108.76943 * 180.02562 * 3 2 1 5 5 C 1.39261 * 133.77148 * 180.02562 * 4 3 2 6 6 C 1.39193 * 119.46818 * 179.97438 * 5 4 3 7 7 C 1.47718 * 119.95074 * 179.97438 * 6 5 4 8 8 O 1.21566 * 120.00232 * 335.08309 * 7 6 5 9 9 N 1.34780 * 120.00200 * 155.07769 * 7 6 5 10 10 C 1.46764 * 125.32902 * 354.54102 * 9 7 6 11 11 C 1.53988 * 106.67079 * 198.44252 * 10 9 7 12 12 H 1.09003 * 112.25008 * 93.85308 * 11 10 9 13 13 C 1.53672 * 109.90166 * 220.92966 * 11 10 9 14 14 N 1.46657 * 107.97062 * 93.31414 * 13 11 10 15 15 C 1.36938 * 125.33561 * 179.29479 * 14 13 11 16 16 H 1.07998 * 120.00085 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00180 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00296 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00228 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46679 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46886 * 119.99801 * 19 17 15 22 22 H 1.48495 * 109.46829 * 239.99869 * 19 17 15 23 23 C 1.48700 * 109.51979 * 359.16047 * 14 13 11 24 24 C 1.53978 * 105.70273 * 18.56693 * 23 14 13 25 25 H 1.08999 * 112.80164 * 94.39013 * 24 23 14 26 26 C 1.46654 * 125.33603 * 174.53404 * 9 7 6 27 27 C 1.40051 * 120.10049 * 0.25639 * 6 5 4 28 28 C 1.36526 * 120.46853 * 359.48157 * 27 6 5 29 29 C 1.38907 * 120.19021 * 0.51790 * 28 27 6 30 30 O 1.34240 * 124.83357 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46819 * 89.99915 * 1 2 3 32 32 H 1.08995 * 109.46935 * 209.99662 * 1 2 3 33 33 H 1.08995 * 109.47014 * 329.99915 * 1 2 3 34 34 H 1.07995 * 120.26738 * 0.02562 * 5 4 3 35 35 H 1.08994 * 110.02063 * 317.74655 * 10 9 7 36 36 H 1.09003 * 110.01791 * 79.14198 * 10 9 7 37 37 H 1.08998 * 109.76998 * 212.94522 * 13 11 10 38 38 H 1.09006 * 109.76928 * 333.68430 * 13 11 10 39 39 H 0.96991 * 120.00793 * 180.02562 * 18 17 15 40 40 H 1.09007 * 110.29024 * 259.68543 * 23 14 13 41 41 H 1.09000 * 110.69598 * 137.66968 * 23 14 13 42 42 H 1.09002 * 109.76852 * 59.67394 * 26 9 7 43 43 H 1.08991 * 109.77302 * 298.92886 * 26 9 7 44 44 H 1.07996 * 119.76646 * 179.73894 * 27 6 5 45 45 H 1.07999 * 119.90492 * 180.27850 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2489 1.0660 0.0000 4 6 3.5569 0.6893 -0.0006 5 6 4.7610 1.3890 -0.0004 6 6 5.9619 0.6853 -0.0006 7 6 7.2453 1.4168 -0.0010 8 8 7.3005 2.5473 -0.4446 9 7 8.3551 0.8309 0.4906 10 6 8.4011 -0.4770 1.1549 11 6 9.7228 -0.5257 1.9435 12 1 9.5973 -0.2098 2.9792 13 6 10.3637 -1.9155 1.8049 14 7 11.3041 -1.8700 0.6804 15 6 12.0795 -2.9149 0.2536 16 1 12.0259 -3.8683 0.7579 17 6 12.9352 -2.7483 -0.8266 18 7 13.0010 -1.5861 -1.4410 19 14 13.9934 -4.1735 -1.4084 20 1 13.7356 -5.3617 -0.5558 21 1 13.6595 -4.4942 -2.8194 22 1 15.4267 -3.7973 -1.3120 23 6 11.2847 -0.5137 0.0710 24 6 10.6606 0.4111 1.1323 25 1 11.4074 0.9069 1.7523 26 6 9.7058 1.4003 0.4455 27 6 5.9554 -0.7151 -0.0065 28 6 4.7755 -1.4019 -0.0013 29 6 3.5678 -0.7157 -0.0011 30 8 2.2738 -1.1019 -0.0005 31 1 -0.3633 0.0000 -1.0278 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 4.7629 2.4690 0.0008 35 1 7.5563 -0.5795 1.8359 36 1 8.3805 -1.2739 0.4115 37 1 10.8968 -2.1687 2.7213 38 1 9.5916 -2.6598 1.6098 39 1 13.5986 -1.4698 -2.1960 40 1 10.6723 -0.5132 -0.8308 41 1 12.2961 -0.1825 -0.1642 42 1 9.7216 2.3542 0.9728 43 1 10.0097 1.5469 -0.5909 44 1 6.8903 -1.2557 -0.0109 45 1 4.7811 -2.4819 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048882456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = 51.710256 kcal Electronic energy + Delta-G solvation = -29303.430650 eV Core-core repulsion = 25288.760631 eV Total energy + Delta-G solvation = -4014.670019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.55999 -40.54031 -38.65877 -37.47926 -35.24334 -34.97961 -32.51033 -32.00396 -31.12454 -30.44199 -29.52149 -28.36773 -25.81650 -25.62232 -24.33480 -22.74460 -22.63255 -21.86389 -20.30751 -20.04938 -19.35531 -18.38485 -17.62373 -17.17671 -16.91930 -16.38195 -15.99403 -15.61123 -14.81797 -14.60469 -14.37103 -14.31315 -14.13599 -13.95654 -13.71270 -13.49856 -13.26829 -13.13195 -12.96469 -12.69287 -12.48957 -12.12115 -11.91842 -11.83266 -11.59935 -11.52080 -11.41241 -10.97467 -10.87076 -10.76742 -10.53392 -10.12751 -10.10886 -9.91609 -9.85643 -9.60731 -9.07886 -8.77098 -8.70379 -8.44556 -6.91222 -5.73939 -3.13141 0.42331 0.57444 2.07314 2.13331 2.72282 2.97140 3.36162 3.41791 3.44373 3.50656 3.52928 4.18596 4.34355 4.43723 4.58210 4.72208 4.73920 4.77004 4.87209 4.89523 5.03317 5.09755 5.16303 5.22978 5.44767 5.47973 5.50617 5.56245 5.60334 5.74334 5.75613 5.87436 5.90680 5.95256 5.97962 6.11151 6.17595 6.22973 6.27198 6.47975 6.48064 6.58043 6.76962 7.27906 7.41334 7.57032 7.59765 7.77147 8.17978 8.22700 9.13512 9.75691 10.38594 11.32899 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.002580 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.097669 B =10849.204696 C =11660.326136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.243 3.757 3 N -0.474 5.474 4 C 0.011 3.989 5 C 0.000 4.000 6 C -0.124 4.124 7 C 0.575 3.425 8 O -0.538 6.538 9 N -0.601 5.601 10 C 0.103 3.897 11 C -0.109 4.109 12 H 0.090 0.910 13 C 0.149 3.851 14 N -0.605 5.605 15 C -0.226 4.226 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.921 5.921 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.171 3.829 24 C -0.122 4.122 25 H 0.094 0.906 26 C 0.120 3.880 27 C -0.073 4.073 28 C -0.095 4.095 29 C 0.027 3.973 30 O -0.213 6.213 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.148 0.852 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.027 0.973 38 H 0.025 0.975 39 H 0.252 0.748 40 H 0.023 0.977 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.162 0.838 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.186 2.184 6.034 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.031 3.969 3 N -0.204 5.204 4 C -0.100 4.100 5 C -0.020 4.020 6 C -0.129 4.129 7 C 0.363 3.637 8 O -0.416 6.416 9 N -0.333 5.333 10 C -0.019 4.019 11 C -0.129 4.129 12 H 0.108 0.892 13 C 0.022 3.978 14 N -0.332 5.332 15 C -0.354 4.354 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.569 5.569 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.046 3.954 24 C -0.142 4.142 25 H 0.112 0.888 26 C -0.002 4.002 27 C -0.091 4.091 28 C -0.114 4.114 29 C -0.024 4.024 30 O -0.105 6.105 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.165 0.835 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.179 0.821 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.268 3.379 5.606 22.253 hybrid contribution 0.745 -1.512 -0.406 1.734 sum -20.524 1.867 5.200 21.254 Atomic orbital electron populations 1.20424 0.80729 1.05633 1.05262 1.26500 0.96686 0.78195 0.95490 1.70639 1.00752 1.28925 1.20071 1.19666 0.92013 0.91228 1.07047 1.20324 0.87262 1.00818 0.93564 1.19723 0.93191 0.93690 1.06268 1.17622 0.82435 0.85368 0.78238 1.90787 1.85417 1.17988 1.47404 1.48116 1.07563 1.20446 1.57222 1.22501 0.98598 0.85045 0.95764 1.22828 0.93549 0.97893 0.98586 0.89186 1.21004 0.92271 0.92420 0.92087 1.44729 1.45810 1.09534 1.33151 1.19096 1.15165 0.90414 1.10749 0.90354 1.24791 1.00110 0.97304 0.98289 1.69862 1.41085 1.22014 1.23984 0.86026 0.80110 0.81180 0.78326 1.20520 1.21767 1.21728 1.21893 1.01202 0.82102 0.90174 1.23247 0.96344 0.95956 0.98691 0.88795 1.21829 0.80127 0.96492 1.01800 1.21624 0.98894 0.93203 0.95425 1.19595 0.86821 1.00782 1.04214 1.20558 0.83829 0.94473 1.03529 1.84476 1.15339 1.36296 1.74351 0.88277 0.88810 0.87603 0.83459 0.90887 0.90238 0.95554 0.95728 0.93688 0.95940 0.88695 0.91861 0.90648 0.82119 0.83896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.51 36.01 0.38 0.10 16 2 C 0.24 2.43 8.23 -13.11 -0.11 2.33 16 3 N -0.47 -6.11 11.34 -8.72 -0.10 -6.21 16 4 C 0.01 0.16 7.23 -84.73 -0.61 -0.46 16 5 C 0.00 0.00 9.64 -38.85 -0.37 -0.37 16 6 C -0.12 -1.74 5.66 -104.99 -0.59 -2.33 16 7 C 0.57 9.42 7.62 -12.39 -0.09 9.32 16 8 O -0.54 -10.39 16.91 5.31 0.09 -10.31 16 9 N -0.60 -9.41 3.31 -173.49 -0.57 -9.99 16 10 C 0.10 1.44 4.32 -3.38 -0.01 1.42 16 11 C -0.11 -1.65 4.05 -88.48 -0.36 -2.01 16 12 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 13 C 0.15 2.74 6.61 -3.61 -0.02 2.72 16 14 N -0.61 -14.34 3.43 -170.30 -0.58 -14.93 16 15 C -0.23 -5.97 10.25 -15.06 -0.15 -6.13 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 18 N -0.92 -26.02 10.15 55.49 0.56 -25.45 16 19 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.17 3.83 4.98 -2.32 -0.01 3.82 16 24 C -0.12 -2.09 4.04 -88.48 -0.36 -2.45 16 25 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 26 C 0.12 1.96 6.20 -3.60 -0.02 1.93 16 27 C -0.07 -0.88 8.10 -39.52 -0.32 -1.20 16 28 C -0.10 -1.05 9.99 -39.95 -0.40 -1.45 16 29 C 0.03 0.34 7.43 -38.48 -0.29 0.05 16 30 O -0.21 -2.42 10.77 3.82 0.04 -2.38 16 31 H 0.10 0.29 8.14 -51.92 -0.42 -0.13 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.15 2.03 7.84 -52.49 -0.41 1.61 16 35 H 0.07 0.84 7.17 -51.93 -0.37 0.47 16 36 H 0.08 1.17 5.82 -51.93 -0.30 0.87 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.02 0.44 7.66 -51.93 -0.40 0.04 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.02 0.56 7.57 -51.92 -0.39 0.16 16 41 H 0.10 2.44 6.24 -51.93 -0.32 2.12 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.34 7.62 -51.93 -0.40 0.95 16 44 H 0.16 1.84 4.41 -52.49 -0.23 1.61 16 45 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -33.17 362.66 -9.33 -42.50 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.76 Total: -0.08 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -3.45 Total: 4.94 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.69 Total: -56.58 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.13 Total: -12.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.17 -9.33 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048882456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.211 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds