Wall clock time and date at job start Sat Apr 11 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30089 * 124.87675 * 2 1 4 4 C 1.35578 * 108.83782 * 179.77123 * 3 2 1 5 5 C 1.40293 * 106.62097 * 0.40611 * 4 3 2 6 6 C 1.38586 * 119.92165 * 179.79200 * 5 4 3 7 7 C 1.38217 * 120.21792 * 359.72041 * 6 5 4 8 8 C 1.38178 * 120.67363 * 0.02626 * 7 6 5 9 9 C 1.39358 * 120.24289 * 359.97438 * 8 7 6 10 10 C 1.47437 * 120.30152 * 179.97438 * 9 8 7 11 11 O 1.21602 * 119.99776 * 142.44708 * 10 9 8 12 12 N 1.34776 * 119.99889 * 322.44865 * 10 9 8 13 13 C 1.46654 * 125.33336 * 174.70968 * 12 10 9 14 14 C 1.53678 * 107.97057 * 179.29020 * 13 12 10 15 15 H 1.09001 * 113.31682 * 106.32888 * 14 13 12 16 16 C 1.53985 * 109.29775 * 233.05996 * 14 13 12 17 17 N 1.46758 * 106.67557 * 82.34078 * 16 14 13 18 18 C 1.36932 * 125.33332 * 198.42717 * 17 16 14 19 19 H 1.08007 * 120.00121 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00137 * 0.02790 * 18 17 16 21 21 N 1.31617 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00163 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47036 * 89.99954 * 22 20 18 24 24 H 1.48499 * 109.46920 * 210.00058 * 22 20 18 25 25 H 1.48501 * 109.47007 * 329.99715 * 22 20 18 26 26 C 1.46663 * 109.33130 * 18.44906 * 17 16 14 27 27 C 1.53667 * 107.97159 * 359.29416 * 26 17 16 28 28 H 1.09001 * 112.78124 * 106.01266 * 27 26 17 29 29 C 1.46757 * 125.33209 * 354.70282 * 12 10 9 30 30 O 1.34131 * 124.88243 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47333 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47530 * 299.98931 * 1 2 3 33 33 H 1.09007 * 109.47111 * 59.98996 * 1 2 3 34 34 H 1.08008 * 119.88922 * 179.74531 * 6 5 4 35 35 H 1.07999 * 119.65818 * 179.97438 * 7 6 5 36 36 H 1.08001 * 119.88250 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.77096 * 59.66055 * 13 12 10 38 38 H 1.09000 * 109.76829 * 298.91963 * 13 12 10 39 39 H 1.09001 * 110.01329 * 323.03788 * 16 14 13 40 40 H 1.09001 * 110.01669 * 201.64666 * 16 14 13 41 41 H 0.96995 * 120.00366 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.76939 * 239.66010 * 26 17 16 43 43 H 1.09009 * 109.76417 * 118.91874 * 26 17 16 44 44 H 1.08999 * 110.01580 * 79.15147 * 29 12 10 45 45 H 1.08994 * 110.02274 * 317.75604 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2509 1.0672 0.0000 4 6 3.5539 0.6926 0.0051 5 6 3.5682 -0.7102 -0.0012 6 6 4.7763 -1.3892 -0.0023 7 6 5.9679 -0.6889 -0.0030 8 6 5.9735 0.6929 -0.0022 9 6 4.7724 1.3996 -0.0010 10 6 4.7768 2.8740 0.0005 11 8 3.9435 3.4851 -0.6405 12 7 5.7044 3.5443 0.7122 13 6 5.8861 4.9996 0.7108 14 6 7.0380 5.3345 1.6713 15 1 7.9562 5.6233 1.1598 16 6 6.5632 6.3902 2.6868 17 7 5.8439 5.6665 3.7416 18 6 4.9687 6.2285 4.6322 19 1 4.4857 5.6126 5.3765 20 6 4.7022 7.5897 4.5785 21 7 5.2904 8.3402 3.6713 22 14 3.5078 8.3562 5.7931 23 1 4.2477 8.8011 7.0013 24 1 2.8419 9.5242 5.1624 25 1 2.4841 7.3528 6.1810 26 6 6.2097 4.2470 3.6925 27 6 7.2014 4.0527 2.5349 28 1 8.2246 3.8975 2.8773 29 6 6.6908 2.9324 1.6101 30 8 2.2741 -1.1003 -0.0005 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 -0.3634 0.5140 -0.8899 34 1 4.7867 -2.4693 -0.0029 35 1 6.9042 -1.2272 -0.0035 36 1 6.9120 1.2272 -0.0024 37 1 4.9710 5.4857 1.0490 38 1 6.1341 5.3392 -0.2948 39 1 5.8958 7.1018 2.2007 40 1 7.4210 6.9123 3.1108 41 1 5.1045 9.2914 3.6340 42 1 5.3192 3.6426 3.5205 43 1 6.6781 3.9544 4.6323 44 1 7.5175 2.5207 1.0312 45 1 6.2206 2.1463 2.2009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049241681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:39 Heat of formation + Delta-G solvation = 49.970991 kcal Electronic energy + Delta-G solvation = -29910.601506 eV Core-core repulsion = 25895.856066 eV Total energy + Delta-G solvation = -4014.745440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.46584 -40.30897 -38.54742 -37.45015 -35.08119 -34.84651 -32.36789 -31.85709 -31.30471 -29.90974 -29.57810 -28.36235 -25.74547 -25.47831 -23.99458 -23.21204 -22.39077 -21.88341 -20.05046 -19.54043 -19.35667 -18.44982 -17.36535 -17.05919 -16.85753 -16.41953 -15.96404 -15.63307 -15.17557 -14.68216 -14.45925 -13.96092 -13.80483 -13.66000 -13.53051 -13.24639 -13.09864 -12.92989 -12.80165 -12.45645 -12.33648 -12.26800 -11.95069 -11.84488 -11.49604 -11.43801 -11.31313 -10.92765 -10.79716 -10.64216 -10.40446 -10.09724 -9.96098 -9.83996 -9.63654 -9.58240 -9.05444 -8.65777 -8.60927 -8.25451 -6.81336 -5.66494 -3.04726 0.22180 0.88107 2.22992 2.24174 2.81454 3.14006 3.42285 3.47553 3.49648 3.57594 3.60920 4.23703 4.48768 4.51912 4.61864 4.72414 4.77747 4.83173 4.91761 5.09208 5.12761 5.14253 5.21958 5.35208 5.47293 5.52321 5.59300 5.62876 5.71009 5.75095 5.81750 5.90804 5.93646 5.96036 6.00968 6.16435 6.29713 6.34089 6.44086 6.62835 6.69345 6.77312 6.84848 7.45925 7.47363 7.64209 7.77573 7.84099 8.34404 8.40161 9.24497 9.84949 10.47746 11.40281 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013003 B = 0.003327 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.813600 B = 8413.853605 C = 9611.707581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.248 3.752 3 N -0.460 5.460 4 C 0.071 3.929 5 C -0.002 4.002 6 C -0.073 4.073 7 C -0.101 4.101 8 C -0.090 4.090 9 C -0.064 4.064 10 C 0.569 3.431 11 O -0.515 6.515 12 N -0.602 5.602 13 C 0.123 3.877 14 C -0.123 4.123 15 H 0.089 0.911 16 C 0.170 3.830 17 N -0.600 5.600 18 C -0.225 4.225 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.144 3.856 27 C -0.110 4.110 28 H 0.098 0.902 29 C 0.109 3.891 30 O -0.215 6.215 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.020 0.980 41 H 0.252 0.748 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.064 0.936 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.503 -21.412 -8.864 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.037 3.963 3 N -0.189 5.189 4 C -0.042 4.042 5 C -0.052 4.052 6 C -0.092 4.092 7 C -0.119 4.119 8 C -0.110 4.110 9 C -0.068 4.068 10 C 0.357 3.643 11 O -0.391 6.391 12 N -0.336 5.336 13 C 0.002 3.998 14 C -0.143 4.143 15 H 0.107 0.893 16 C 0.044 3.956 17 N -0.326 5.326 18 C -0.353 4.353 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C 0.018 3.982 27 C -0.129 4.129 28 H 0.117 0.883 29 C -0.015 4.015 30 O -0.107 6.107 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.082 0.918 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.650 -20.274 -9.208 22.277 hybrid contribution -0.274 -0.326 0.746 0.859 sum 0.376 -20.600 -8.462 22.274 Atomic orbital electron populations 1.20439 0.80602 1.05038 1.05942 1.26736 0.96859 0.78045 0.94671 1.70726 1.00753 1.28319 1.19096 1.19512 0.91502 0.90642 1.02592 1.20212 0.84180 0.94099 1.06737 1.19999 0.87273 1.00403 1.01549 1.20929 0.97297 0.93647 1.00041 1.21490 0.97197 0.94362 0.97923 1.19191 0.90650 0.93564 1.03374 1.17540 0.80529 0.86090 0.80170 1.90832 1.36138 1.69010 1.43135 1.48114 1.32982 1.08498 1.43992 1.21884 1.00110 0.78986 0.98866 1.23214 0.96972 0.97482 0.96638 0.89278 1.21477 0.95779 0.91307 0.86991 1.44193 1.50446 1.01648 1.36291 1.19040 1.16637 0.91481 1.08117 0.90563 1.24767 1.00292 0.96119 0.99209 1.69847 1.46130 1.05282 1.35787 0.86088 0.80500 0.78831 0.80186 1.21633 1.21600 1.20734 1.21134 0.94383 0.88295 0.94384 1.22860 0.99838 0.94227 0.95989 0.88343 1.22155 0.91154 0.96516 0.91632 1.84486 1.15066 1.36389 1.74749 0.88981 0.87691 0.87761 0.84366 0.83517 0.83537 0.90026 0.92265 0.88488 0.96228 0.93691 0.96048 0.96028 0.91798 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 36.01 0.38 -0.08 16 2 C 0.25 3.18 8.24 -13.01 -0.11 3.07 16 3 N -0.46 -7.92 11.20 -8.48 -0.09 -8.01 16 4 C 0.07 1.16 6.84 -84.44 -0.58 0.59 16 5 C 0.00 -0.03 7.42 -38.68 -0.29 -0.31 16 6 C -0.07 -0.69 10.05 -39.46 -0.40 -1.09 16 7 C -0.10 -0.84 10.00 -39.61 -0.40 -1.24 16 8 C -0.09 -0.98 8.30 -39.19 -0.33 -1.31 16 9 C -0.06 -1.00 5.42 -104.74 -0.57 -1.56 16 10 C 0.57 10.81 7.47 -12.51 -0.09 10.72 16 11 O -0.52 -11.88 17.11 5.28 0.09 -11.79 16 12 N -0.60 -10.51 3.31 -173.60 -0.57 -11.08 16 13 C 0.12 2.35 6.24 -3.61 -0.02 2.32 16 14 C -0.12 -2.21 4.09 -88.47 -0.36 -2.57 16 15 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 16 C 0.17 4.02 4.84 -3.39 -0.02 4.01 16 17 N -0.60 -15.34 3.38 -171.88 -0.58 -15.92 16 18 C -0.22 -6.35 10.25 -15.06 -0.15 -6.51 16 19 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 20 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 21 N -0.92 -27.01 10.16 55.49 0.56 -26.44 16 22 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.14 2.99 6.62 -3.61 -0.02 2.96 16 27 C -0.11 -1.76 4.09 -88.47 -0.36 -2.13 16 28 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 29 C 0.11 1.51 4.47 -3.39 -0.02 1.49 16 30 O -0.21 -2.72 10.77 3.76 0.04 -2.67 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.15 1.29 5.66 -52.49 -0.30 0.99 16 37 H 0.08 1.91 7.47 -51.93 -0.39 1.52 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.10 2.62 5.83 -51.93 -0.30 2.32 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.02 0.47 7.47 -51.93 -0.39 0.09 16 43 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 44 H 0.06 0.66 6.51 -51.93 -0.34 0.32 16 45 H 0.07 0.98 7.23 -51.93 -0.38 0.60 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -37.24 364.71 -9.37 -46.61 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.86 Total: -1.73 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -3.42 Total: 8.03 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.69 Total: -61.46 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.13 Total: -14.47 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.24 -9.37 -46.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049241681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.580 kcal (2) G-P(sol) polarization free energy of solvation -37.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds