Wall clock time and date at job start Sat Apr 11 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41257 * 128.07587 * 2 1 4 4 N 1.30131 * 106.59151 * 180.25046 * 3 2 1 5 5 O 1.20887 * 111.97630 * 359.76943 * 4 3 2 6 6 C 1.34632 * 111.47203 * 359.97438 * 5 4 3 7 7 C 1.47518 * 126.94431 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99981 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99925 * 0.02576 * 7 6 5 10 10 C 1.46496 * 119.99758 * 180.02562 * 9 7 6 11 11 C 1.50708 * 109.47143 * 180.02562 * 10 9 7 12 12 C 1.37952 * 119.70861 * 260.00402 * 11 10 9 13 13 C 1.38221 * 119.82475 * 180.02562 * 12 11 10 14 14 C 1.38000 * 119.71858 * 0.26500 * 13 12 11 15 15 C 1.38786 * 120.50650 * 359.92925 * 14 13 12 16 16 C 1.37715 * 119.84681 * 359.57723 * 15 14 13 17 17 C 1.50602 * 122.85756 * 181.45062 * 16 15 14 18 18 C 1.53272 * 110.82468 * 339.69520 * 17 16 15 19 19 N 1.47232 * 107.66565 * 47.63840 * 18 17 16 20 20 C 1.36942 * 121.32943 * 115.81261 * 19 18 17 21 21 H 1.07998 * 119.99966 * 334.47824 * 20 19 18 22 22 C 1.38803 * 119.99647 * 154.76586 * 20 19 18 23 23 N 1.31623 * 120.00351 * 346.58495 * 22 20 19 24 24 Si 1.86801 * 120.00200 * 166.59331 * 22 20 19 25 25 H 1.48500 * 109.47294 * 89.99377 * 24 22 20 26 26 H 1.48492 * 109.47451 * 209.99657 * 24 22 20 27 27 H 1.48507 * 109.46681 * 329.99484 * 24 22 20 28 28 C 1.46679 * 117.33638 * 295.53861 * 19 18 17 29 29 H 1.09001 * 109.47113 * 270.12890 * 1 2 3 30 30 H 1.08993 * 109.47302 * 30.13293 * 1 2 3 31 31 H 1.09006 * 109.46890 * 150.13451 * 1 2 3 32 32 H 1.07998 * 126.70725 * 0.02562 * 3 2 1 33 33 H 0.96999 * 120.00049 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.47337 * 60.00361 * 10 9 7 35 35 H 1.09002 * 109.47595 * 299.99656 * 10 9 7 36 36 H 1.07996 * 120.08350 * 0.04885 * 12 11 10 37 37 H 1.07998 * 120.13857 * 180.23420 * 13 12 11 38 38 H 1.08009 * 119.74563 * 179.90183 * 14 13 12 39 39 H 1.09000 * 109.20309 * 100.15931 * 17 16 15 40 40 H 1.08994 * 109.20116 * 219.50461 * 17 16 15 41 41 H 1.09006 * 109.88767 * 288.12269 * 18 17 16 42 42 H 1.09000 * 109.90857 * 167.17394 * 18 17 16 43 43 H 0.96995 * 120.00049 * 180.02562 * 23 22 20 44 44 H 1.08992 * 109.44092 * 164.73525 * 28 19 18 45 45 H 1.09003 * 109.43348 * 284.61638 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5891 0.6354 -0.0055 5 8 3.5995 -0.5735 -0.0042 6 6 2.3509 -1.0770 0.0030 7 6 1.9696 -2.5021 0.0060 8 8 0.7953 -2.8171 0.0122 9 7 2.9230 -3.4548 0.0019 10 6 2.5443 -4.8699 0.0043 11 6 3.7870 -5.7225 -0.0006 12 6 4.2279 -6.2814 -1.1823 13 6 5.3671 -7.0642 -1.1894 14 6 6.0525 -7.2856 -0.0123 15 6 5.6075 -6.7271 1.1777 16 6 4.4785 -5.9386 1.1848 17 6 3.9541 -5.2736 2.4302 18 6 4.4946 -5.9658 3.6864 19 7 5.9466 -6.1366 3.5126 20 6 6.8414 -5.5025 4.3328 21 1 6.5623 -4.5849 4.8294 22 6 8.1089 -6.0359 4.5212 23 7 8.3684 -7.2676 4.1364 24 14 9.4463 -5.0060 5.3211 25 1 9.4137 -5.2080 6.7919 26 1 10.7715 -5.4196 4.7940 27 1 9.2170 -3.5714 5.0132 28 6 6.3964 -7.0178 2.4298 29 1 -0.3633 0.0023 1.0277 30 1 -0.3633 0.8887 -0.5159 31 1 -0.3633 -0.8912 -0.5118 32 1 2.0947 2.1541 0.0004 33 1 3.8598 -3.2034 -0.0027 34 1 1.9498 -5.0885 -0.8828 35 1 1.9583 -5.0878 0.8972 36 1 3.6847 -6.1075 -2.0993 37 1 5.7190 -7.5012 -2.1123 38 1 6.9418 -7.8985 -0.0172 39 1 4.2612 -4.2278 2.4347 40 1 2.8655 -5.3275 2.4341 41 1 4.0205 -6.9400 3.8060 42 1 4.2982 -5.3492 4.5635 43 1 9.2541 -7.6405 4.2684 44 1 7.4557 -6.8465 2.2390 45 1 6.2443 -8.0571 2.7212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051306452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:54 Heat of formation + Delta-G solvation = 73.245220 kcal Electronic energy + Delta-G solvation = -29336.067295 eV Core-core repulsion = 25322.331102 eV Total energy + Delta-G solvation = -4013.736193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.24716 -40.14520 -39.24171 -36.06750 -35.41343 -34.72658 -32.92076 -32.55850 -31.63544 -30.15578 -29.08771 -28.46452 -26.20236 -25.58027 -23.94395 -23.18845 -22.46542 -22.13857 -20.81735 -20.55217 -19.08567 -18.74624 -17.99646 -16.81476 -16.37484 -16.10396 -15.76854 -15.50981 -14.91279 -14.79977 -14.64838 -14.29372 -13.96348 -13.61210 -13.54865 -13.47691 -13.30822 -12.95994 -12.91974 -12.73524 -12.58563 -12.41621 -11.98043 -11.55670 -11.52876 -11.28986 -10.97108 -10.90110 -10.74492 -10.64217 -10.49546 -10.40089 -10.17395 -9.92908 -9.77109 -9.75353 -9.22148 -8.72010 -8.32176 -7.90734 -6.79711 -5.85792 -3.26977 0.56615 1.53937 1.81433 1.84381 2.45796 2.79007 3.14333 3.34905 3.41993 3.44232 3.89763 4.15722 4.34352 4.44147 4.51107 4.75370 4.79901 5.05689 5.07816 5.23127 5.30175 5.33281 5.37353 5.41663 5.46275 5.50777 5.56096 5.64761 5.80157 5.89622 5.94648 6.07682 6.09057 6.14672 6.18174 6.44120 6.51391 6.62838 6.81099 6.81180 6.91059 7.07357 7.17517 7.19926 7.41835 7.59557 7.72950 7.74316 7.87070 8.32958 9.13473 9.75194 10.32962 11.24419 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.003318 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.079360 B = 8437.358684 C = 9979.677659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.122 4.122 3 C -0.018 4.018 4 N -0.340 5.340 5 O 0.120 5.880 6 C -0.091 4.091 7 C 0.605 3.395 8 O -0.515 6.515 9 N -0.703 5.703 10 C 0.166 3.834 11 C -0.129 4.129 12 C -0.116 4.116 13 C -0.132 4.132 14 C -0.111 4.111 15 C -0.076 4.076 16 C -0.044 4.044 17 C -0.101 4.101 18 C 0.142 3.858 19 N -0.593 5.593 20 C -0.248 4.248 21 H 0.069 0.931 22 C 0.001 3.999 23 N -0.910 5.910 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.204 3.796 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.198 0.802 33 H 0.411 0.589 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.060 0.940 43 H 0.255 0.745 44 H 0.100 0.900 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.382 9.014 -11.757 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C -0.195 4.195 4 N -0.039 5.039 5 O 0.046 5.954 6 C -0.157 4.157 7 C 0.389 3.611 8 O -0.392 6.392 9 N -0.354 5.354 10 C 0.044 3.956 11 C -0.129 4.129 12 C -0.135 4.135 13 C -0.150 4.150 14 C -0.130 4.130 15 C -0.078 4.078 16 C -0.045 4.045 17 C -0.140 4.140 18 C 0.015 3.985 19 N -0.315 5.315 20 C -0.377 4.377 21 H 0.087 0.913 22 C -0.197 4.197 23 N -0.555 5.555 24 Si 0.735 3.265 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.079 3.921 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.215 0.785 33 H 0.246 0.754 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.117 0.883 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.839 9.262 -11.704 19.688 hybrid contribution 0.604 0.545 0.312 0.871 sum -12.236 9.807 -11.392 19.382 Atomic orbital electron populations 1.20326 0.86324 1.04063 1.03511 1.21642 0.99035 0.90267 1.01737 1.25014 0.87757 1.02116 1.04629 1.73799 1.23077 0.91237 1.15774 1.84997 1.28103 1.15494 1.66823 1.24058 0.84738 0.96295 1.10582 1.16479 0.85695 0.81445 0.77507 1.90837 1.17138 1.80599 1.50636 1.46041 1.10051 1.06274 1.72996 1.20278 0.94736 0.77535 1.03059 1.19732 0.97585 1.01662 0.93939 1.20753 0.97157 0.98933 0.96614 1.20939 0.96133 1.00024 0.97890 1.21215 0.99853 0.99720 0.92182 1.21060 0.94767 0.94336 0.97634 1.19452 0.94286 0.96742 0.94029 1.21138 0.98615 0.99810 0.94409 1.21009 0.86039 0.97200 0.94249 1.44000 0.99665 1.54723 1.33130 1.19166 0.93543 1.02823 1.22167 0.91318 1.25026 0.99239 0.95519 0.99897 1.69970 1.21330 1.12813 1.51371 0.86245 0.81406 0.79820 0.79032 1.21340 1.21505 1.20453 1.19807 0.97520 0.93096 0.81721 0.90101 0.90822 0.89164 0.78501 0.75363 0.90585 0.89843 0.86775 0.86614 0.86199 0.91122 0.91957 0.95492 0.92097 0.93484 0.88253 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.68 9.95 36.01 0.36 -0.32 16 2 C -0.12 -1.24 6.37 -103.99 -0.66 -1.90 16 3 C -0.02 -0.17 12.14 -17.13 -0.21 -0.38 16 4 N -0.34 -4.20 12.04 30.46 0.37 -3.84 16 5 O 0.12 1.50 11.04 15.58 0.17 1.67 16 6 C -0.09 -1.07 7.29 -36.31 -0.26 -1.34 16 7 C 0.61 7.57 7.82 -12.48 -0.10 7.48 16 8 O -0.52 -7.34 15.12 5.29 0.08 -7.26 16 9 N -0.70 -8.37 5.52 -62.53 -0.34 -8.72 16 10 C 0.17 2.02 5.10 -5.19 -0.03 2.00 16 11 C -0.13 -1.82 5.26 -104.47 -0.55 -2.37 16 12 C -0.12 -1.53 9.65 -39.69 -0.38 -1.92 16 13 C -0.13 -1.84 10.05 -39.67 -0.40 -2.24 16 14 C -0.11 -1.84 9.62 -39.47 -0.38 -2.22 16 15 C -0.08 -1.46 5.82 -104.56 -0.61 -2.07 16 16 C -0.04 -0.76 5.76 -104.60 -0.60 -1.36 16 17 C -0.10 -1.71 5.25 -27.79 -0.15 -1.86 16 18 C 0.14 2.87 6.55 -3.50 -0.02 2.84 16 19 N -0.59 -14.44 2.97 -173.64 -0.52 -14.96 16 20 C -0.25 -6.63 9.71 -15.06 -0.15 -6.77 16 21 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 22 C 0.00 0.03 5.05 -17.43 -0.09 -0.06 16 23 N -0.91 -25.56 10.98 55.49 0.61 -24.95 16 24 Si 0.91 21.38 29.57 -169.99 -5.03 16.35 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.20 4.73 4.84 -5.04 -0.02 4.71 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.84 6.74 -51.93 -0.35 0.49 16 32 H 0.20 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.41 4.80 8.29 -40.82 -0.34 4.46 16 34 H 0.08 0.85 7.99 -51.93 -0.41 0.44 16 35 H 0.08 1.06 6.34 -51.93 -0.33 0.73 16 36 H 0.11 1.23 8.03 -52.49 -0.42 0.81 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.89 8.05 -52.48 -0.42 1.46 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 0.92 6.26 -51.93 -0.33 0.60 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.10 2.56 6.29 -51.93 -0.33 2.24 16 45 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -30.36 373.73 -9.13 -39.48 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.85 Total: 4.36 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -4.25 Total: -7.77 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.12 Total: -52.46 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: 0.25 Total: -5.59 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.36 -9.13 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051306452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.728 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds