Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47279 * 2 1 4 4 O 1.34254 * 126.52456 * 269.97813 * 3 2 1 5 5 C 1.34053 * 108.22807 * 179.97438 * 4 3 2 6 6 N 1.29934 * 109.24077 * 359.97438 * 5 4 3 7 7 C 1.36066 * 108.47955 * 0.02562 * 6 5 4 8 8 C 1.47417 * 126.45114 * 180.02562 * 7 6 5 9 9 O 1.21601 * 120.00183 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99472 * 359.95843 * 8 7 6 11 11 C 1.46500 * 119.99386 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47010 * 180.02562 * 11 10 8 13 13 C 1.38251 * 120.02155 * 89.99513 * 12 11 10 14 14 C 1.38142 * 119.96311 * 180.02562 * 13 12 11 15 15 C 1.38445 * 120.10545 * 359.97438 * 14 13 12 16 16 C 1.38071 * 119.93555 * 0.02562 * 15 14 13 17 17 C 1.38150 * 120.01732 * 269.72932 * 12 11 10 18 18 C 1.50774 * 108.86800 * 180.02562 * 16 15 14 19 19 N 1.46642 * 107.69762 * 359.97438 * 18 16 15 20 20 C 1.36932 * 126.56047 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00451 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99966 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99750 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00109 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47294 * 60.00347 * 24 22 20 26 26 H 1.48506 * 109.47097 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47010 * 299.99935 * 24 22 20 28 28 C 1.46633 * 106.87219 * 0.02562 * 19 18 16 29 29 H 1.08993 * 109.47142 * 60.00326 * 1 2 3 30 30 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47326 * 300.00114 * 1 2 3 32 32 H 1.09002 * 109.47041 * 239.99691 * 2 1 3 33 33 H 1.08998 * 109.47579 * 119.99830 * 2 1 3 34 34 H 1.07999 * 125.37681 * 179.97438 * 5 4 3 35 35 H 0.97002 * 120.00332 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47531 * 299.99985 * 11 10 8 37 37 H 1.08998 * 109.47605 * 59.99911 * 11 10 8 38 38 H 1.07998 * 120.01819 * 359.97438 * 13 12 11 39 39 H 1.08006 * 119.95301 * 180.02562 * 14 13 12 40 40 H 1.07998 * 119.94625 * 359.97438 * 17 12 11 41 41 H 1.08996 * 109.81222 * 119.54091 * 18 16 15 42 42 H 1.08999 * 109.81247 * 240.45600 * 18 16 15 43 43 H 0.97001 * 119.99989 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.81327 * 240.44794 * 28 19 18 45 45 H 1.09004 * 109.81344 * 119.54880 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2991 2.1740 -1.0789 5 6 2.7227 3.3742 -0.6580 6 7 2.7285 3.3948 0.6411 7 6 2.3011 2.1849 1.0936 8 6 2.1555 1.7785 2.5032 9 8 1.7606 0.6613 2.7762 10 7 2.4606 2.6452 3.4893 11 6 2.3154 2.2415 4.8900 12 6 2.7175 3.3843 5.7864 13 6 1.7735 4.3076 6.1957 14 6 2.1436 5.3550 7.0169 15 6 3.4585 5.4813 7.4314 16 6 4.4013 4.5592 7.0227 17 6 4.0287 3.5067 6.2041 18 6 5.7368 4.9322 7.6149 19 7 5.5464 6.1469 8.4141 20 6 6.5086 6.8171 9.1212 21 1 7.5267 6.4567 9.1234 22 6 6.1757 7.9605 9.8345 23 7 4.9351 8.4001 9.8314 24 14 7.4884 8.8753 10.7985 25 1 8.5570 9.3287 9.8725 26 1 6.8803 10.0532 11.4680 27 1 8.0712 7.9709 11.8222 28 6 4.1283 6.5056 8.3120 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.0132 4.1944 -1.2978 35 1 2.7755 3.5365 3.2715 36 1 1.2767 1.9750 5.0856 37 1 2.9547 1.3813 5.0884 38 1 0.7474 4.2107 5.8729 39 1 1.4058 6.0760 7.3369 40 1 4.7650 2.7826 5.8880 41 1 6.0975 4.1239 8.2509 42 1 6.4542 5.1240 6.8170 43 1 4.7023 9.1989 10.3301 44 1 4.0288 7.4960 7.8678 45 1 3.6727 6.4965 9.3022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054259091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = 38.975753 kcal Electronic energy + Delta-G solvation = -28031.571696 eV Core-core repulsion = 24016.349467 eV Total energy + Delta-G solvation = -4015.222229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.79409 -39.96889 -39.31238 -36.40620 -35.23566 -34.73684 -34.22738 -32.25597 -31.19824 -29.94345 -29.47436 -27.56093 -26.10048 -25.14814 -24.19350 -23.65843 -22.05846 -21.75078 -20.68816 -20.41939 -20.06830 -18.46344 -17.19601 -17.01434 -16.52510 -16.25345 -15.56994 -15.37738 -15.25467 -15.00251 -14.54486 -14.51875 -14.30186 -14.18170 -13.85461 -13.69215 -13.24813 -13.00801 -12.99450 -12.51549 -12.14096 -11.94876 -11.84248 -11.67715 -11.67185 -11.59884 -11.54618 -11.08385 -11.07019 -10.82884 -10.48642 -10.34438 -10.22812 -10.14337 -9.79817 -9.40269 -9.10061 -8.95468 -8.40767 -8.02119 -6.86033 -5.82057 -3.15369 0.76678 1.57417 1.72853 1.75939 2.20047 3.06971 3.08423 3.37731 3.41435 3.43007 3.72180 4.14569 4.20020 4.40510 4.51623 4.67470 4.74255 4.81790 4.91634 4.98302 5.16529 5.25241 5.32164 5.39748 5.42547 5.46275 5.49627 5.58226 5.61191 5.68614 5.78880 5.81289 5.86832 6.03034 6.11482 6.24688 6.50449 6.54636 6.55789 6.77196 6.79612 7.04455 7.05738 7.32654 7.35129 7.42774 7.52276 7.68175 7.98170 8.12764 9.10708 9.70558 10.37803 11.32011 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023482 B = 0.001947 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.103866 B =14375.002242 C =14841.196509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.045 3.955 4 O -0.200 6.200 5 C 0.175 3.825 6 N -0.461 5.461 7 C -0.076 4.076 8 C 0.601 3.399 9 O -0.538 6.538 10 N -0.705 5.705 11 C 0.170 3.830 12 C -0.133 4.133 13 C -0.102 4.102 14 C -0.112 4.112 15 C -0.080 4.080 16 C -0.107 4.107 17 C -0.082 4.082 18 C 0.175 3.825 19 N -0.601 5.601 20 C -0.227 4.227 21 H 0.083 0.917 22 C -0.007 4.007 23 N -0.923 5.923 24 Si 0.919 3.081 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.284 1.284 28 C 0.206 3.794 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.256 0.744 35 H 0.412 0.588 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.256 0.744 44 H 0.065 0.935 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 -14.017 -21.252 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.012 4.012 4 O -0.086 6.086 5 C -0.053 4.053 6 N -0.190 5.190 7 C -0.195 4.195 8 C 0.386 3.614 9 O -0.416 6.416 10 N -0.355 5.355 11 C 0.048 3.952 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.131 4.131 15 C -0.081 4.081 16 C -0.107 4.107 17 C -0.101 4.101 18 C 0.050 3.950 19 N -0.327 5.327 20 C -0.354 4.354 21 H 0.101 0.899 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.749 3.251 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.210 1.210 28 C 0.081 3.919 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.271 0.729 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.196 -14.091 -20.505 26.525 hybrid contribution 0.705 0.782 -0.103 1.058 sum -8.491 -13.309 -20.608 25.960 Atomic orbital electron populations 1.21704 0.92997 1.02979 1.02482 1.20399 0.97151 0.85358 1.05482 1.23829 0.98408 0.95568 0.83355 1.84383 1.63673 1.24231 1.36308 1.28051 0.99080 0.86990 0.91228 1.70774 1.16924 1.21090 1.10215 1.21504 1.10824 0.91596 0.95614 1.16704 0.77582 0.84501 0.82568 1.90777 1.47456 1.20060 1.83268 1.45982 1.66425 1.17508 1.05633 1.20162 1.01869 0.95096 0.78064 1.19430 0.94015 0.98046 1.01853 1.20815 0.98610 0.94468 0.98147 1.20493 0.95151 0.98523 0.98905 1.21553 0.93306 0.97187 0.96064 1.20718 0.97476 0.95071 0.97465 1.20301 0.95007 0.97303 0.97504 1.19705 0.91287 0.90430 0.93594 1.43948 1.05340 1.26801 1.56621 1.18932 0.89107 1.05132 1.22228 0.89904 1.24844 0.96890 0.98207 1.00448 1.69913 1.16370 1.25123 1.45624 0.86095 0.80303 0.79093 0.79652 1.21007 1.21490 1.21009 1.19740 0.83580 0.92811 0.95757 0.92626 0.90974 0.91728 0.89726 0.86408 0.72870 0.75214 0.90560 0.90552 0.86328 0.86100 0.86538 0.94577 0.94593 0.93409 0.91774 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.05 -0.35 5.93 -27.88 -0.17 -0.52 16 3 C 0.05 0.44 6.69 -35.08 -0.23 0.20 16 4 O -0.20 -1.68 10.73 6.51 0.07 -1.61 16 5 C 0.18 1.29 13.19 51.96 0.69 1.98 16 6 N -0.46 -4.96 11.06 -11.48 -0.13 -5.09 16 7 C -0.08 -0.87 6.99 -83.02 -0.58 -1.45 16 8 C 0.60 7.63 7.81 -12.52 -0.10 7.53 16 9 O -0.54 -7.53 14.80 5.28 0.08 -7.45 16 10 N -0.70 -8.52 5.55 -62.57 -0.35 -8.87 16 11 C 0.17 2.05 5.80 -5.19 -0.03 2.02 16 12 C -0.13 -1.85 5.25 -104.65 -0.55 -2.40 16 13 C -0.10 -1.45 9.70 -39.61 -0.38 -1.83 16 14 C -0.11 -1.88 10.05 -39.54 -0.40 -2.27 16 15 C -0.08 -1.61 6.22 -104.57 -0.65 -2.26 16 16 C -0.11 -2.05 6.22 -104.57 -0.65 -2.70 16 17 C -0.08 -1.29 9.70 -39.54 -0.38 -1.67 16 18 C 0.18 3.79 7.25 -5.08 -0.04 3.75 16 19 N -0.60 -15.63 3.41 -175.68 -0.60 -16.22 16 20 C -0.23 -6.28 10.32 -15.06 -0.16 -6.44 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 22 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 23 N -0.92 -26.72 10.44 55.49 0.58 -26.14 16 24 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.21 5.06 5.39 -5.08 -0.03 5.04 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.12 1.03 6.48 -51.93 -0.34 0.70 16 34 H 0.26 0.57 8.06 -52.49 -0.42 0.14 16 35 H 0.41 4.99 8.19 -40.82 -0.33 4.65 16 36 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 40 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.06 1.73 7.49 -51.93 -0.39 1.34 16 45 H 0.06 1.73 7.49 -51.93 -0.39 1.34 16 LS Contribution 381.81 15.07 5.75 5.75 Total: -1.00 -32.69 381.81 -9.06 -41.75 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.06 Total: 3.06 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.39 Total: -1.95 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.49 Total: -56.33 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.15 Total: -9.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.69 -9.06 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054259091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.728 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds