Wall clock time and date at job start Sat Apr 11 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47010 * 2 1 4 4 C 1.35321 * 126.66362 * 90.28462 * 3 2 1 5 5 C 1.42276 * 103.91909 * 180.09110 * 4 3 2 6 6 C 1.48319 * 126.93545 * 179.90941 * 5 4 3 7 7 O 1.21495 * 120.00473 * 359.70758 * 6 5 4 8 8 N 1.34782 * 119.99849 * 179.70865 * 6 5 4 9 9 C 1.46501 * 120.00096 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47405 * 179.97438 * 9 8 6 11 11 C 1.38258 * 120.02332 * 270.22002 * 10 9 8 12 12 C 1.38143 * 119.96364 * 180.23476 * 11 10 9 13 13 C 1.38449 * 120.10356 * 359.52277 * 12 11 10 14 14 C 1.38065 * 119.93194 * 0.25758 * 13 12 11 15 15 C 1.38148 * 120.01921 * 89.99621 * 10 9 8 16 16 C 1.50781 * 108.86152 * 179.97438 * 14 13 12 17 17 N 1.46634 * 107.70246 * 0.02562 * 16 14 13 18 18 C 1.36929 * 126.56839 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00070 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00426 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99648 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00072 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46834 * 59.99976 * 22 20 18 24 24 H 1.48492 * 109.46918 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46892 * 300.00105 * 22 20 18 26 26 C 1.46643 * 106.87045 * 359.97438 * 17 16 14 27 27 N 1.30987 * 106.12112 * 359.64560 * 5 4 3 28 28 O 1.20902 * 111.44012 * 0.23178 * 27 5 4 29 29 H 1.09001 * 109.47034 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47640 * 299.99911 * 1 2 3 31 31 H 1.08996 * 109.47446 * 60.00607 * 1 2 3 32 32 H 1.09003 * 109.47365 * 240.00013 * 2 1 3 33 33 H 1.09001 * 109.46844 * 120.00071 * 2 1 3 34 34 H 1.08000 * 128.03579 * 359.96109 * 4 3 2 35 35 H 0.96997 * 120.00206 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.47248 * 59.99819 * 9 8 6 37 37 H 1.09003 * 109.47210 * 300.00035 * 9 8 6 38 38 H 1.07998 * 120.01283 * 0.03461 * 11 10 9 39 39 H 1.08002 * 119.95132 * 179.80781 * 12 11 10 40 40 H 1.08002 * 119.94394 * 0.03126 * 15 10 9 41 41 H 1.09000 * 109.81260 * 119.54868 * 16 14 13 42 42 H 1.08998 * 109.81519 * 240.45467 * 16 14 13 43 43 H 0.97001 * 119.99333 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.80797 * 240.45438 * 26 17 16 45 45 H 1.08999 * 109.81012 * 119.54608 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3067 2.1809 1.0855 5 6 2.7394 3.4196 0.5354 6 6 3.1670 4.6264 1.2842 7 8 3.1649 4.6201 2.4991 8 7 3.5580 5.7302 0.6168 9 6 3.9810 6.9220 1.3563 10 6 4.3657 8.0066 0.3835 11 6 5.6695 8.1015 -0.0667 12 6 6.0219 9.0992 -0.9548 13 6 5.0694 9.9986 -1.4025 14 6 3.7664 9.9011 -0.9565 15 6 3.4148 8.9040 -0.0627 16 6 2.9490 10.9947 -1.5964 17 7 3.8415 11.7680 -2.4656 18 6 3.4987 12.8507 -3.2306 19 1 2.4810 13.2123 -3.2294 20 6 4.4594 13.4841 -4.0070 21 7 5.6999 13.0444 -4.0074 22 14 3.9915 14.9607 -5.0513 23 1 3.4686 16.0403 -4.1758 24 1 5.1886 15.4503 -5.7807 25 1 2.9450 14.5647 -6.0276 26 6 5.1720 11.1607 -2.3577 27 7 2.6893 3.2771 -0.7657 28 8 2.2994 2.1752 -1.0749 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2160 1.9106 2.1272 35 1 3.5601 5.7352 -0.3532 36 1 4.8382 6.6757 1.9829 37 1 3.1605 7.2705 1.9837 38 1 6.4127 7.3979 0.2783 39 1 7.0412 9.1750 -1.3039 40 1 2.3958 8.8278 0.2867 41 1 2.1454 10.5569 -2.1886 42 1 2.5307 11.6423 -0.8259 43 1 6.3711 13.4869 -4.5502 44 1 5.8823 11.8931 -1.9739 45 1 5.4970 10.8068 -3.3360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054289475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:13 Heat of formation + Delta-G solvation = 78.095023 kcal Electronic energy + Delta-G solvation = -27648.555717 eV Core-core repulsion = 23635.029826 eV Total energy + Delta-G solvation = -4013.525890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -45.44059 -40.07985 -39.39990 -36.44218 -35.41542 -34.67011 -34.14837 -32.27835 -31.24024 -30.58963 -29.76966 -27.71427 -26.18659 -25.30576 -24.62182 -23.86052 -22.70624 -22.04241 -20.47272 -20.43038 -19.97981 -18.21229 -17.91896 -17.15655 -17.03912 -16.21031 -15.63575 -15.41477 -15.15027 -15.03340 -14.60613 -14.53902 -14.33409 -14.20823 -13.89390 -13.85149 -13.28766 -13.16303 -13.04433 -12.56696 -12.38397 -12.02616 -11.97308 -11.87079 -11.71113 -11.57870 -11.52239 -11.09683 -10.84551 -10.80920 -10.60892 -10.50459 -10.25674 -10.17069 -9.86260 -9.81205 -9.35470 -8.97626 -8.44904 -8.05566 -6.87785 -5.83359 -3.16735 0.77981 1.29328 1.51537 1.71909 2.52308 2.83631 2.89030 3.37030 3.40759 3.42359 3.64125 4.01244 4.16550 4.39163 4.43909 4.59787 4.61360 4.65599 4.75930 4.91054 4.94754 5.13019 5.21033 5.25954 5.28174 5.40223 5.41405 5.44871 5.48458 5.55138 5.58397 5.63464 5.82723 5.99442 6.06975 6.08617 6.46737 6.51711 6.53545 6.73068 6.74835 7.02502 7.13976 7.30497 7.32197 7.50060 7.64534 7.66482 7.82759 8.11227 9.09300 9.69166 10.36207 11.30738 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.001880 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.832202 B =14892.890571 C =15618.246339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 C -0.032 4.032 4 C -0.182 4.182 5 C -0.025 4.025 6 C 0.597 3.403 7 O -0.526 6.526 8 N -0.706 5.706 9 C 0.170 3.830 10 C -0.135 4.135 11 C -0.102 4.102 12 C -0.112 4.112 13 C -0.078 4.078 14 C -0.107 4.107 15 C -0.082 4.082 16 C 0.176 3.824 17 N -0.600 5.600 18 C -0.227 4.227 19 H 0.083 0.917 20 C -0.007 4.007 21 N -0.923 5.923 22 Si 0.919 3.081 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.205 3.795 27 N -0.329 5.329 28 O 0.125 5.875 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.180 0.820 35 H 0.410 0.590 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.256 0.744 44 H 0.065 0.935 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 -26.083 9.896 28.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.081 4.081 3 C -0.095 4.095 4 C -0.204 4.204 5 C -0.184 4.184 6 C 0.381 3.619 7 O -0.401 6.401 8 N -0.358 5.358 9 C 0.048 3.952 10 C -0.136 4.136 11 C -0.120 4.120 12 C -0.131 4.131 13 C -0.080 4.080 14 C -0.107 4.107 15 C -0.101 4.101 16 C 0.050 3.950 17 N -0.327 5.327 18 C -0.355 4.355 19 H 0.101 0.899 20 C -0.203 4.203 21 N -0.570 5.570 22 Si 0.749 3.251 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.081 3.919 27 N -0.029 5.029 28 O 0.048 5.952 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.198 0.802 35 H 0.246 0.754 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.496 -25.003 9.633 27.352 hybrid contribution -0.210 0.516 -0.279 0.623 sum -5.706 -24.486 9.354 26.826 Atomic orbital electron populations 1.21818 0.93238 1.02956 1.03076 1.20171 0.96829 0.85967 1.05088 1.24565 1.02205 0.97258 0.85440 1.22424 1.04939 0.91528 1.01521 1.23514 1.06728 0.97997 0.90198 1.16879 0.77590 0.81098 0.86337 1.90803 1.54124 1.82701 1.12431 1.46076 1.65786 1.12643 1.11293 1.20208 1.00494 0.81977 0.92527 1.19412 0.94365 0.98248 1.01554 1.20825 0.95304 0.98226 0.97670 1.20502 0.99246 0.94973 0.98347 1.21568 0.93558 0.96571 0.96262 1.20728 0.96371 0.96671 0.96979 1.20303 0.98674 0.94189 0.96929 1.19706 0.92751 0.89847 0.92710 1.43942 1.04377 1.33279 1.51074 1.18934 0.95167 1.03067 1.18301 0.89891 1.24842 0.95582 0.99746 1.00165 1.69912 1.01244 1.42264 1.43603 0.86093 0.77128 0.81982 0.79932 1.20991 1.21472 1.21003 1.19751 0.88841 0.88645 0.94685 1.74225 1.13760 0.99350 1.15556 1.84792 1.59710 1.17185 1.33474 0.91047 0.91936 0.91881 0.88985 0.88199 0.80216 0.75445 0.90323 0.90320 0.86281 0.86024 0.86497 0.94587 0.94544 0.93394 0.91712 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.89 37.16 0.37 -0.12 16 2 C -0.04 -0.14 6.50 -27.88 -0.18 -0.32 16 3 C -0.03 -0.23 6.73 -35.35 -0.24 -0.47 16 4 C -0.18 -1.60 10.92 -39.07 -0.43 -2.03 16 5 C -0.03 -0.29 7.19 -82.53 -0.59 -0.88 16 6 C 0.60 7.75 7.85 -12.11 -0.10 7.66 16 7 O -0.53 -8.00 16.95 5.37 0.09 -7.91 16 8 N -0.71 -8.53 5.55 -62.28 -0.35 -8.87 16 9 C 0.17 2.05 5.80 -5.20 -0.03 2.02 16 10 C -0.14 -1.87 5.25 -104.65 -0.55 -2.42 16 11 C -0.10 -1.44 9.70 -39.61 -0.38 -1.82 16 12 C -0.11 -1.87 10.05 -39.54 -0.40 -2.27 16 13 C -0.08 -1.58 6.22 -104.57 -0.65 -2.23 16 14 C -0.11 -2.05 6.22 -104.57 -0.65 -2.70 16 15 C -0.08 -1.28 9.70 -39.54 -0.38 -1.66 16 16 C 0.18 3.78 7.25 -5.08 -0.04 3.74 16 17 N -0.60 -15.59 3.41 -175.67 -0.60 -16.19 16 18 C -0.23 -6.30 10.32 -15.06 -0.16 -6.46 16 19 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -26.70 10.44 55.49 0.58 -26.12 16 22 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.21 5.05 5.39 -5.08 -0.03 5.02 16 27 N -0.33 -3.79 11.84 33.29 0.39 -3.40 16 28 O 0.12 1.19 11.18 17.26 0.19 1.39 16 29 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.41 4.84 8.22 -40.82 -0.34 4.50 16 36 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 37 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 44 H 0.07 1.74 7.49 -51.93 -0.39 1.35 16 45 H 0.06 1.73 7.49 -51.93 -0.39 1.35 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -32.33 385.45 -9.58 -41.91 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.15 Total: 1.84 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -4.53 Total: -5.23 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.03 Total: -54.59 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: 0.28 Total: -6.52 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.33 -9.58 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054289475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.006 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds