Wall clock time and date at job start Sat Apr 11 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30826 * 125.96345 * 2 1 4 4 C 1.33237 * 109.82984 * 180.12512 * 3 2 1 5 5 C 1.50699 * 125.52787 * 179.85533 * 4 3 2 6 6 H 1.08995 * 110.37814 * 2.10206 * 5 4 3 7 7 C 1.55064 * 110.27999 * 124.74555 * 5 4 3 8 8 N 1.48244 * 104.47643 * 142.67651 * 7 5 4 9 9 C 1.34777 * 127.74578 * 140.98287 * 8 7 5 10 10 O 1.21283 * 119.99750 * 179.68178 * 9 8 7 11 11 C 1.50702 * 119.99928 * 359.96271 * 9 8 7 12 12 F 1.39899 * 109.47086 * 54.71920 * 11 9 8 13 13 F 1.39902 * 109.46965 * 174.72117 * 11 9 8 14 14 C 1.48402 * 104.50927 * 320.72665 * 8 7 5 15 15 C 1.53276 * 110.42488 * 239.71138 * 5 4 3 16 16 C 1.52835 * 115.81037 * 10.84553 * 15 5 4 17 17 N 1.47801 * 85.76556 * 94.47400 * 16 15 5 18 18 C 1.36935 * 134.39143 * 203.83367 * 17 16 15 19 19 H 1.08001 * 119.99726 * 180.02562 * 18 17 16 20 20 C 1.38816 * 120.00277 * 359.97438 * 18 17 16 21 21 N 1.31616 * 119.99712 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99990 * 179.97438 * 20 18 17 23 23 H 1.48510 * 109.46835 * 90.00429 * 22 20 18 24 24 H 1.48498 * 109.46963 * 209.99976 * 22 20 18 25 25 H 1.48498 * 109.47254 * 330.00189 * 22 20 18 26 26 C 1.47788 * 91.21438 * 23.83382 * 17 16 15 27 27 N 1.30720 * 108.94605 * 359.58442 * 4 3 2 28 28 N 1.34431 * 125.95523 * 179.66700 * 2 1 3 29 29 H 0.96999 * 126.83126 * 0.02562 * 28 2 1 30 30 H 1.08999 * 109.47712 * 270.30711 * 1 2 3 31 31 H 1.09008 * 109.47140 * 30.30598 * 1 2 3 32 32 H 1.09006 * 109.47289 * 150.30358 * 1 2 3 33 33 H 1.09000 * 110.53501 * 23.92263 * 7 5 4 34 34 H 1.08997 * 110.45069 * 261.38842 * 7 5 4 35 35 H 1.09000 * 109.46708 * 294.71978 * 11 9 8 36 36 H 1.09000 * 110.46449 * 157.57209 * 14 8 7 37 37 H 1.08995 * 110.46405 * 280.14853 * 14 8 7 38 38 H 1.08995 * 113.83100 * 208.68338 * 16 15 5 39 39 H 1.09004 * 113.82796 * 340.26610 * 16 15 5 40 40 H 0.96998 * 120.00202 * 179.97438 * 21 20 18 41 41 H 1.08997 * 113.82863 * 221.95369 * 26 17 16 42 42 H 1.09004 * 113.93774 * 90.39190 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0027 5 6 4.7372 1.6235 -0.0067 6 1 4.4016 2.6598 0.0304 7 6 5.6759 1.3080 1.1865 8 7 7.0418 1.5118 0.6474 9 6 8.1006 2.0657 1.2707 10 8 9.1636 2.1580 0.6941 11 6 7.9655 2.5644 2.6864 12 9 7.4828 1.5336 3.4999 13 9 9.2158 2.9818 3.1551 14 6 6.9834 0.9634 -0.7303 15 6 5.6031 1.3856 -1.2489 16 6 4.9932 0.4850 -2.3226 17 7 4.5295 1.7379 -2.9549 18 6 3.5140 2.0575 -3.8161 19 1 3.3823 3.0794 -4.1400 20 6 2.6546 1.0681 -4.2737 21 7 2.8156 -0.1772 -3.8793 22 14 1.2690 1.5043 -5.4479 23 1 1.7507 1.3859 -6.8477 24 1 0.1299 0.5754 -5.2362 25 1 0.8248 2.8983 -5.1934 26 6 5.5993 2.5080 -2.2865 27 7 3.6193 -0.6169 0.0044 28 7 2.2963 -1.0882 0.0063 29 1 2.0092 -2.0147 0.0114 30 1 -0.3634 0.0055 1.0276 31 1 -0.3634 0.8873 -0.5186 32 1 -0.3634 -0.8927 -0.5091 33 1 5.5463 0.2760 1.5125 34 1 5.4869 1.9946 2.0117 35 1 7.2696 3.4030 2.7112 36 1 7.7709 1.3968 -1.3467 37 1 7.0673 -0.1232 -0.7118 38 1 5.7311 -0.0589 -2.9124 39 1 4.1853 -0.1496 -1.9583 40 1 2.2149 -0.8686 -4.1987 41 1 5.2698 3.4698 -1.8936 42 1 6.5213 2.5770 -2.8639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070438369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:16 Heat of formation + Delta-G solvation = 33.462282 kcal Electronic energy + Delta-G solvation = -31292.796442 eV Core-core repulsion = 26755.398352 eV Total energy + Delta-G solvation = -4537.398090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.30721 -47.33249 -41.79688 -40.17779 -38.58645 -35.87661 -33.11724 -32.19319 -31.86233 -30.36082 -29.29009 -27.87956 -27.47631 -25.62755 -24.94231 -24.17531 -21.98436 -20.80019 -20.19758 -20.08257 -18.43670 -18.03450 -17.73506 -17.47787 -16.92392 -16.72629 -15.97445 -15.67838 -15.27473 -14.72812 -14.31349 -14.27537 -14.13673 -13.96635 -13.89852 -13.65982 -13.60509 -13.19716 -13.04484 -12.70407 -12.56892 -12.36588 -12.17946 -12.06506 -11.83443 -11.40581 -11.33125 -11.19707 -10.96217 -10.71178 -10.48521 -10.12200 -9.86474 -9.71377 -9.54198 -9.47330 -9.42855 -8.85711 -8.81464 -8.67067 -6.85166 -5.74365 -3.05103 2.06527 2.12290 2.39664 3.10017 3.36457 3.38581 3.42377 3.43516 3.57066 3.78805 4.27987 4.36998 4.44079 4.52276 4.71190 4.77907 4.91871 5.13527 5.15715 5.32193 5.38058 5.44744 5.52762 5.55525 5.64105 5.75442 5.83867 5.96049 6.02574 6.08276 6.32816 6.36116 6.56412 6.62647 6.76188 6.93873 7.18743 7.26316 7.32321 7.51402 7.63493 7.69801 7.98904 8.64202 9.05017 9.73042 10.60159 11.41782 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.004057 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.924335 B = 6899.755508 C = 8239.214941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.285 3.715 3 N -0.522 5.522 4 C 0.263 3.737 5 C 0.025 3.975 6 H 0.108 0.892 7 C 0.107 3.893 8 N -0.604 5.604 9 C 0.492 3.508 10 O -0.509 6.509 11 C 0.260 3.740 12 F -0.188 7.188 13 F -0.178 7.178 14 C 0.121 3.879 15 C -0.117 4.117 16 C 0.172 3.828 17 N -0.603 5.603 18 C -0.212 4.212 19 H 0.077 0.923 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.281 1.281 26 C 0.133 3.867 27 N -0.306 5.306 28 N -0.478 5.478 29 H 0.434 0.566 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.024 0.976 39 H 0.099 0.901 40 H 0.248 0.752 41 H 0.046 0.954 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 0.387 14.457 14.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.250 5.250 4 C -0.020 4.020 5 C 0.003 3.997 6 H 0.126 0.874 7 C -0.017 4.017 8 N -0.337 5.337 9 C 0.276 3.724 10 O -0.384 6.384 11 C 0.203 3.797 12 F -0.169 7.169 13 F -0.159 7.159 14 C -0.001 4.001 15 C -0.121 4.121 16 C 0.046 3.954 17 N -0.329 5.329 18 C -0.340 4.340 19 H 0.095 0.905 20 C -0.199 4.199 21 N -0.565 5.565 22 Si 0.736 3.264 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.207 1.207 26 C 0.007 3.993 27 N -0.135 5.135 28 N -0.195 5.195 29 H 0.278 0.722 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.154 0.846 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.117 0.883 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.737 0.404 14.033 14.059 hybrid contribution -1.132 -0.586 -0.942 1.585 sum -0.395 -0.182 13.092 13.099 Atomic orbital electron populations 1.20288 0.84661 1.04937 1.03398 1.24051 0.96138 0.82971 0.96144 1.70226 1.01272 1.29269 1.24260 1.23148 0.92343 0.89512 0.97000 1.19973 0.88271 0.97773 0.93662 0.87406 1.22802 0.79866 1.02963 0.96046 1.49005 1.10333 1.57590 1.16763 1.20506 0.83963 0.79804 0.88123 1.90813 1.26126 1.55214 1.66205 1.21595 0.82648 0.89450 0.86049 1.93053 1.87803 1.61409 1.74625 1.93050 1.43719 1.90147 1.88944 1.22447 0.98372 0.98948 0.80341 1.23047 0.92274 1.02269 0.94470 1.22462 0.95852 0.90204 0.86857 1.45924 1.29029 1.03847 1.54124 1.18939 1.02866 0.93703 1.18459 0.90513 1.24652 0.99316 0.95357 1.00604 1.69832 1.39360 0.99568 1.47707 0.86217 0.81884 0.77329 0.80944 1.21881 1.21897 1.20675 1.22513 0.92307 0.94019 0.90456 1.77846 0.96587 1.12183 1.26883 1.47762 1.04340 1.09541 1.57829 0.72206 0.89781 0.88626 0.90333 0.89207 0.89888 0.84637 0.89311 0.90012 0.95813 0.88281 0.94234 0.93555 0.94364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.51 36.00 0.38 -0.44 16 2 C 0.29 4.57 8.24 -155.70 -1.28 3.28 16 3 N -0.52 -9.88 11.19 -8.16 -0.09 -9.97 16 4 C 0.26 4.80 5.28 -156.85 -0.83 3.97 16 5 C 0.03 0.41 3.38 -90.54 -0.31 0.10 16 6 H 0.11 1.74 7.77 -51.93 -0.40 1.34 16 7 C 0.11 1.36 5.96 -1.99 -0.01 1.35 16 8 N -0.60 -8.34 3.32 -169.21 -0.56 -8.90 16 9 C 0.49 6.91 7.74 -10.98 -0.09 6.82 16 10 O -0.51 -8.99 16.90 5.55 0.09 -8.89 16 11 C 0.26 2.77 4.88 36.01 0.18 2.94 16 12 F -0.19 -2.09 16.39 2.25 0.04 -2.05 16 13 F -0.18 -2.23 16.95 2.25 0.04 -2.19 16 14 C 0.12 1.89 6.45 -2.80 -0.02 1.87 16 15 C -0.12 -2.11 1.16 -154.50 -0.18 -2.28 16 16 C 0.17 3.92 6.26 -3.42 -0.02 3.90 16 17 N -0.60 -14.91 3.70 -183.43 -0.68 -15.59 16 18 C -0.21 -5.81 10.70 -15.06 -0.16 -5.97 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 21 N -0.92 -25.92 11.40 55.49 0.63 -25.29 16 22 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.13 2.65 8.18 -3.41 -0.03 2.62 16 27 N -0.31 -5.47 10.80 32.42 0.35 -5.12 16 28 N -0.48 -7.36 7.45 32.62 0.24 -7.12 16 29 H 0.43 5.12 8.96 -182.33 -1.63 3.48 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.19 7.62 -51.93 -0.40 0.79 16 34 H 0.08 0.81 7.21 -51.93 -0.37 0.43 16 35 H 0.14 0.88 8.13 -51.93 -0.42 0.46 16 36 H 0.09 1.41 7.59 -51.93 -0.39 1.02 16 37 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 2.42 4.12 -51.93 -0.21 2.21 16 40 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 41 H 0.05 0.88 7.88 -51.93 -0.41 0.47 16 42 H 0.04 0.75 7.96 -51.93 -0.41 0.33 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -35.13 357.26 -8.36 -43.49 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.32 Total: 1.50 kcal Atomic # 6 Polarization: 20.45 SS G_CDS: -2.46 Total: 17.99 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -0.11 Total: -72.00 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.08 Total: -4.24 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.13 -8.36 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070438369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.950 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds