Wall clock time and date at job start Sat Apr 11 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39645 * 120.48936 * 277.54371 * 3 2 1 5 5 N 1.31748 * 120.88150 * 180.02562 * 4 3 2 6 6 C 1.31730 * 122.04134 * 359.97438 * 5 4 3 7 7 C 1.39598 * 120.87774 * 0.02562 * 6 5 4 8 8 C 1.47872 * 120.49327 * 179.97438 * 7 6 5 9 9 O 1.21550 * 120.00159 * 211.78830 * 8 7 6 10 10 N 1.34773 * 119.99438 * 31.78879 * 8 7 6 11 11 C 1.46982 * 120.72720 * 359.27207 * 10 8 7 12 12 C 1.53159 * 108.44500 * 125.48155 * 11 10 8 13 13 C 1.52688 * 110.64360 * 54.01678 * 12 11 10 14 14 H 1.09004 * 109.86720 * 181.38481 * 13 12 11 15 15 O 1.42685 * 109.80144 * 62.26939 * 13 12 11 16 16 C 1.43073 * 113.86848 * 175.29469 * 15 13 12 17 17 C 1.52804 * 109.52101 * 61.51191 * 16 15 13 18 18 N 1.47175 * 108.92619 * 308.65638 * 17 16 15 19 19 C 1.36937 * 121.22463 * 230.90873 * 18 17 16 20 20 H 1.08000 * 120.00057 * 153.78115 * 19 18 17 21 21 C 1.38816 * 120.00088 * 333.78492 * 19 18 17 22 22 N 1.31623 * 119.99724 * 343.48153 * 21 19 18 23 23 Si 1.86792 * 120.00259 * 163.48376 * 21 19 18 24 24 H 1.48500 * 109.47188 * 94.46279 * 23 21 19 25 25 H 1.48496 * 109.47667 * 214.46301 * 23 21 19 26 26 H 1.48500 * 109.47416 * 334.46518 * 23 21 19 27 27 C 1.47583 * 117.54866 * 50.63472 * 18 17 16 28 28 H 1.09007 * 110.31479 * 187.95658 * 27 18 17 29 29 C 1.46804 * 120.71667 * 179.29987 * 10 8 7 30 30 C 1.39678 * 120.49187 * 97.85170 * 3 2 1 31 31 H 4.52733 * 13.93017 * 359.97438 * 4 2 1 32 32 H 1.07996 * 119.55395 * 0.02733 * 4 3 2 33 33 H 1.07996 * 119.56257 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.64217 * 245.17399 * 11 10 8 35 35 H 1.09003 * 109.63828 * 5.80055 * 11 10 8 36 36 H 1.09001 * 109.41019 * 174.62210 * 12 11 10 37 37 H 1.08992 * 109.41882 * 294.42315 * 12 11 10 38 38 H 1.08999 * 109.47769 * 181.63749 * 16 15 13 39 39 H 1.09007 * 109.47411 * 301.64390 * 16 15 13 40 40 H 1.09009 * 109.53463 * 188.79599 * 17 16 15 41 41 H 1.09002 * 109.44183 * 68.46736 * 17 16 15 42 42 H 0.96997 * 119.99735 * 180.02562 * 22 21 19 43 43 H 1.09003 * 109.52284 * 114.37059 * 29 10 8 44 44 H 1.08994 * 109.57361 * 354.20829 * 29 10 8 45 45 H 1.07997 * 120.91456 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3146 -0.1570 1.1929 5 7 4.6320 -0.1571 1.2019 6 6 5.3385 -0.0108 0.0998 7 6 4.7114 0.1527 -1.1367 8 6 5.5128 0.3168 -2.3686 9 8 5.0897 0.9970 -3.2827 10 7 6.7122 -0.2880 -2.4776 11 6 7.2462 -1.1012 -1.3758 12 6 7.5887 -2.4909 -1.9211 13 6 8.5192 -2.3818 -3.1267 14 1 8.7349 -3.3756 -3.5193 15 8 9.7500 -1.7761 -2.7342 16 6 10.7295 -1.7274 -3.7759 17 6 10.1983 -0.8886 -4.9374 18 7 8.8623 -1.3808 -5.3099 19 6 8.5541 -1.6834 -6.6094 20 1 7.7827 -2.4073 -6.8269 21 6 9.2334 -1.0599 -7.6471 22 7 9.9267 0.0347 -7.4159 23 14 9.1634 -1.7743 -9.3716 24 1 8.0795 -1.1098 -10.1391 25 1 10.4628 -1.5490 -10.0540 26 1 8.8919 -3.2321 -9.2930 27 6 7.8688 -1.5421 -4.2305 28 1 6.9764 -2.0408 -4.6090 29 6 7.5141 -0.1483 -3.6993 30 6 3.3147 0.1654 -1.1923 31 1 -1.0500 0.0005 0.0002 32 1 2.7754 -0.2805 2.1205 33 1 6.4171 -0.0166 0.1535 34 1 8.1456 -0.6322 -0.9768 35 1 6.4964 -1.1907 -0.5898 36 1 8.0744 -3.0766 -1.1406 37 1 6.6733 -2.9934 -2.2332 38 1 11.6463 -1.2799 -3.3922 39 1 10.9377 -2.7384 -4.1264 40 1 10.8718 -0.9784 -5.7898 41 1 10.1310 0.1551 -4.6302 42 1 10.4011 0.4706 -8.1411 43 1 8.4293 0.3992 -3.4738 44 1 6.9415 0.3935 -4.4520 45 1 2.7977 0.2943 -2.1317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074335521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:17 Heat of formation + Delta-G solvation = 71.758137 kcal Electronic energy + Delta-G solvation = -30017.947981 eV Core-core repulsion = 26004.147303 eV Total energy + Delta-G solvation = -4013.800678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 4.74 seconds Orbital eigenvalues (eV) -41.11146 -39.69743 -38.44426 -36.00617 -34.72440 -34.63059 -32.79325 -31.80553 -31.58145 -30.89649 -29.45497 -27.50479 -25.86567 -24.70324 -24.08021 -23.56854 -22.71778 -21.60571 -20.52795 -19.00415 -18.52255 -17.54590 -17.22388 -16.94004 -16.50152 -15.78770 -15.50517 -15.34803 -15.09104 -14.90354 -14.51825 -14.42626 -13.97815 -13.80245 -13.61227 -13.49779 -13.28904 -12.96355 -12.57348 -12.43937 -12.31883 -12.04970 -11.78484 -11.39483 -11.14744 -11.10867 -10.95755 -10.80422 -10.63894 -10.38255 -10.29248 -10.16290 -10.01917 -9.98085 -9.67044 -9.53443 -9.06006 -9.01908 -8.64818 -8.34201 -6.80818 -5.89787 -3.33625 0.23731 0.68196 2.31999 2.48892 2.92557 3.11310 3.32267 3.39611 3.41273 3.64093 3.78384 4.05991 4.27921 4.37816 4.38594 4.47179 4.53079 4.85667 4.92362 5.04512 5.13546 5.25215 5.28527 5.35497 5.49744 5.55230 5.64941 5.68990 5.71044 5.74487 5.93818 6.00154 6.03017 6.11358 6.16559 6.25579 6.31903 6.39238 6.56302 6.68563 6.85287 7.04793 7.11150 7.44617 7.47573 7.57414 7.67275 7.84645 8.23270 8.28484 9.04915 9.66476 10.23289 11.17856 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.003027 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.200645 B = 9247.430046 C =10333.118314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.151 4.151 3 C -0.047 4.047 4 C 0.140 3.860 5 N -0.481 5.481 6 C 0.122 3.878 7 C -0.171 4.171 8 C 0.556 3.444 9 O -0.532 6.532 10 N -0.594 5.594 11 C 0.082 3.918 12 C -0.122 4.122 13 C 0.082 3.918 14 H 0.055 0.945 15 O -0.388 6.388 16 C 0.039 3.961 17 C 0.136 3.864 18 N -0.584 5.584 19 C -0.256 4.256 20 H 0.069 0.931 21 C 0.006 3.994 22 N -0.900 5.900 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.134 3.866 28 H 0.073 0.927 29 C 0.107 3.893 30 C 0.000 4.000 31 H 0.227 0.773 32 H 0.164 0.836 33 H 0.184 0.816 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.097 0.903 41 H 0.029 0.971 42 H 0.256 0.744 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.015 -3.094 17.463 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.152 4.152 3 C -0.049 4.049 4 C -0.018 4.018 5 N -0.189 5.189 6 C -0.034 4.034 7 C -0.176 4.176 8 C 0.343 3.657 9 O -0.409 6.409 10 N -0.327 5.327 11 C -0.040 4.040 12 C -0.161 4.161 13 C 0.022 3.978 14 H 0.073 0.927 15 O -0.308 6.308 16 C -0.039 4.039 17 C 0.011 3.989 18 N -0.306 5.306 19 C -0.385 4.385 20 H 0.087 0.913 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.735 3.265 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.204 1.204 27 C 0.025 3.975 28 H 0.092 0.908 29 C -0.016 4.016 30 C -0.026 4.026 31 H 0.244 0.756 32 H 0.182 0.818 33 H 0.201 0.799 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.115 0.885 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.599 -2.666 17.750 20.354 hybrid contribution -0.572 -0.247 -2.096 2.187 sum -10.171 -2.913 15.653 18.893 Atomic orbital electron populations 1.24926 0.95715 0.98721 0.98286 1.19592 0.91467 1.01881 1.02224 1.16829 0.88145 1.05269 0.94696 1.23121 0.89784 0.91955 0.96920 1.67803 1.07532 1.13429 1.30100 1.23778 1.01461 0.91434 0.86731 1.21025 0.94716 1.05953 0.95891 1.17992 0.81162 0.80414 0.86172 1.90815 1.70305 1.39684 1.40116 1.48206 1.18013 1.48512 1.17941 1.22560 0.99919 0.91768 0.89766 1.21810 0.99271 0.96821 0.98181 1.22324 0.85282 0.96157 0.94030 0.92684 1.87732 1.23742 1.81887 1.37393 1.23255 0.90583 1.00056 0.89957 1.21399 0.87755 0.94281 0.95467 1.44286 1.06285 1.77201 1.02838 1.19164 1.20534 1.17626 0.81183 0.91344 1.25058 1.00787 0.95414 0.98083 1.70018 1.35453 1.17060 1.31792 0.86231 0.77204 0.78824 0.84226 1.21294 1.21459 1.20372 1.21596 0.93291 0.93257 0.89364 0.90837 1.22422 0.94516 1.00320 0.84374 1.21771 0.92286 0.90114 0.98406 0.75607 0.81841 0.79939 0.89726 0.88328 0.90129 0.90603 0.90064 0.94126 0.88538 0.95341 0.93413 0.90966 0.88991 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 19.25 29.55 0.57 -0.62 16 2 C -0.15 -1.47 13.27 -38.84 -0.52 -1.99 16 3 C -0.05 -0.50 5.73 -106.91 -0.61 -1.11 16 4 C 0.14 1.35 10.91 -17.06 -0.19 1.16 16 5 N -0.48 -5.21 10.33 -13.03 -0.13 -5.34 16 6 C 0.12 1.35 8.63 -17.09 -0.15 1.20 16 7 C -0.17 -2.21 5.54 -104.87 -0.58 -2.79 16 8 C 0.56 9.13 7.48 -12.32 -0.09 9.04 16 9 O -0.53 -10.86 16.22 5.32 0.09 -10.78 16 10 N -0.59 -9.43 2.96 -173.87 -0.51 -9.94 16 11 C 0.08 1.01 4.77 -3.70 -0.02 0.99 16 12 C -0.12 -1.56 5.75 -26.81 -0.15 -1.71 16 13 C 0.08 1.38 2.81 -26.79 -0.08 1.30 16 14 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 15 O -0.39 -6.88 9.71 -35.23 -0.34 -7.22 16 16 C 0.04 0.73 6.96 37.06 0.26 0.98 16 17 C 0.14 3.09 4.93 -3.77 -0.02 3.07 16 18 N -0.58 -13.94 2.71 -164.13 -0.44 -14.38 16 19 C -0.26 -6.79 9.69 -15.06 -0.15 -6.94 16 20 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 21 C 0.01 0.16 4.97 -17.43 -0.09 0.07 16 22 N -0.90 -25.27 11.12 55.49 0.62 -24.66 16 23 Si 0.91 21.26 29.58 -169.99 -5.03 16.24 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.13 2.69 2.96 -67.08 -0.20 2.49 16 28 H 0.07 1.53 7.99 -51.92 -0.42 1.11 16 29 C 0.11 2.10 5.66 -3.72 -0.02 2.08 16 30 C 0.00 0.00 9.46 -38.46 -0.36 -0.36 16 31 H 0.23 0.78 7.80 -54.09 -0.42 0.35 16 32 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.18 1.73 5.28 -52.49 -0.28 1.45 16 34 H 0.08 1.02 8.00 -51.93 -0.42 0.60 16 35 H 0.10 0.99 3.55 -52.91 -0.19 0.81 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 40 H 0.10 2.43 6.12 -51.92 -0.32 2.11 16 41 H 0.03 0.69 7.21 -51.93 -0.37 0.31 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.07 1.51 6.69 -51.93 -0.35 1.16 16 44 H 0.09 2.12 7.00 -51.93 -0.36 1.75 16 45 H 0.15 1.82 8.00 -52.49 -0.42 1.40 16 LS Contribution 365.30 15.07 5.50 5.50 Total: -1.00 -31.75 365.30 -8.27 -40.02 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.62 Total: 3.69 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -2.39 Total: 6.87 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.48 Total: -54.32 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.26 Total: -18.00 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.75 -8.27 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074335521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.777 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.74 seconds