Wall clock time and date at job start Sat Apr 11 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39645 * 120.48936 * 277.54371 * 3 2 1 5 5 N 1.31748 * 120.88150 * 180.02562 * 4 3 2 6 6 C 1.31730 * 122.04134 * 359.97438 * 5 4 3 7 7 C 1.39598 * 120.87774 * 0.02562 * 6 5 4 8 8 C 1.47872 * 120.49327 * 179.97438 * 7 6 5 9 9 O 1.21550 * 120.00159 * 211.78830 * 8 7 6 10 10 N 1.34773 * 119.99438 * 31.78879 * 8 7 6 11 11 C 1.46982 * 120.72720 * 359.27207 * 10 8 7 12 12 C 1.53159 * 108.44500 * 125.48155 * 11 10 8 13 13 C 1.52688 * 110.64360 * 54.01678 * 12 11 10 14 14 H 1.09004 * 109.86720 * 181.38481 * 13 12 11 15 15 O 1.42685 * 109.80144 * 62.26939 * 13 12 11 16 16 C 1.43073 * 113.86848 * 175.29469 * 15 13 12 17 17 C 1.52804 * 109.52101 * 61.51191 * 16 15 13 18 18 N 1.47175 * 108.92619 * 308.65638 * 17 16 15 19 19 C 1.36937 * 121.22463 * 230.90873 * 18 17 16 20 20 H 1.08000 * 120.00057 * 153.78115 * 19 18 17 21 21 C 1.38816 * 120.00088 * 333.78492 * 19 18 17 22 22 N 1.31623 * 119.99724 * 343.48153 * 21 19 18 23 23 Si 1.86792 * 120.00259 * 163.48376 * 21 19 18 24 24 H 1.48500 * 109.47188 * 94.46279 * 23 21 19 25 25 H 1.48496 * 109.47667 * 214.46301 * 23 21 19 26 26 H 1.48500 * 109.47416 * 334.46518 * 23 21 19 27 27 C 1.47583 * 117.54866 * 50.63472 * 18 17 16 28 28 H 1.09007 * 110.31479 * 187.95658 * 27 18 17 29 29 C 1.46804 * 120.71667 * 179.29987 * 10 8 7 30 30 C 1.39678 * 120.49187 * 97.85170 * 3 2 1 31 31 H 4.52733 * 13.93017 * 359.97438 * 4 2 1 32 32 H 1.07996 * 119.55395 * 0.02733 * 4 3 2 33 33 H 1.07996 * 119.56257 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.64217 * 245.17399 * 11 10 8 35 35 H 1.09003 * 109.63828 * 5.80055 * 11 10 8 36 36 H 1.09001 * 109.41019 * 174.62210 * 12 11 10 37 37 H 1.08992 * 109.41882 * 294.42315 * 12 11 10 38 38 H 1.08999 * 109.47769 * 181.63749 * 16 15 13 39 39 H 1.09007 * 109.47411 * 301.64390 * 16 15 13 40 40 H 1.09009 * 109.53463 * 188.79599 * 17 16 15 41 41 H 1.09002 * 109.44183 * 68.46736 * 17 16 15 42 42 H 0.96997 * 119.99735 * 180.02562 * 22 21 19 43 43 H 1.09003 * 109.52284 * 114.37059 * 29 10 8 44 44 H 1.08994 * 109.57361 * 354.20829 * 29 10 8 45 45 H 1.07997 * 120.91456 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3146 -0.1570 1.1929 5 7 4.6320 -0.1571 1.2019 6 6 5.3385 -0.0108 0.0998 7 6 4.7114 0.1527 -1.1367 8 6 5.5128 0.3168 -2.3686 9 8 5.0897 0.9970 -3.2827 10 7 6.7122 -0.2880 -2.4776 11 6 7.2462 -1.1012 -1.3758 12 6 7.5887 -2.4909 -1.9211 13 6 8.5192 -2.3818 -3.1267 14 1 8.7349 -3.3756 -3.5193 15 8 9.7500 -1.7761 -2.7342 16 6 10.7295 -1.7274 -3.7759 17 6 10.1983 -0.8886 -4.9374 18 7 8.8623 -1.3808 -5.3099 19 6 8.5541 -1.6834 -6.6094 20 1 7.7827 -2.4073 -6.8269 21 6 9.2334 -1.0599 -7.6471 22 7 9.9267 0.0347 -7.4159 23 14 9.1634 -1.7743 -9.3716 24 1 8.0795 -1.1098 -10.1391 25 1 10.4628 -1.5490 -10.0540 26 1 8.8919 -3.2321 -9.2930 27 6 7.8688 -1.5421 -4.2305 28 1 6.9764 -2.0408 -4.6090 29 6 7.5141 -0.1483 -3.6993 30 6 3.3147 0.1654 -1.1923 31 1 -1.0500 0.0005 0.0002 32 1 2.7754 -0.2805 2.1205 33 1 6.4171 -0.0166 0.1535 34 1 8.1456 -0.6322 -0.9768 35 1 6.4964 -1.1907 -0.5898 36 1 8.0744 -3.0766 -1.1406 37 1 6.6733 -2.9934 -2.2332 38 1 11.6463 -1.2799 -3.3922 39 1 10.9377 -2.7384 -4.1264 40 1 10.8718 -0.9784 -5.7898 41 1 10.1310 0.1551 -4.6302 42 1 10.4011 0.4706 -8.1411 43 1 8.4293 0.3992 -3.4738 44 1 6.9415 0.3935 -4.4520 45 1 2.7977 0.2943 -2.1317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074335521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:11 Heat of formation + Delta-G solvation = 51.126828 kcal Electronic energy + Delta-G solvation = -30018.842622 eV Core-core repulsion = 26004.147303 eV Total energy + Delta-G solvation = -4014.695319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 9.39 seconds Orbital eigenvalues (eV) -42.20005 -40.94891 -39.82237 -37.37706 -36.46357 -35.41553 -33.98900 -33.27133 -33.00427 -31.91783 -30.84108 -29.26275 -27.10540 -25.98708 -25.15588 -25.02545 -24.19900 -22.99969 -21.72600 -20.22222 -19.75529 -18.90955 -18.52578 -18.09090 -17.49633 -17.13110 -17.09461 -16.82124 -16.54115 -16.18575 -15.80411 -15.68721 -15.34906 -15.13992 -14.90166 -14.82802 -14.44798 -14.30858 -13.99622 -13.91476 -13.69138 -13.16297 -13.07449 -12.84405 -12.72476 -12.57899 -12.42709 -12.26727 -12.10323 -11.91162 -11.85322 -11.73948 -11.32759 -11.17965 -10.94537 -10.78510 -10.58657 -10.52274 -9.87866 -9.76201 -8.73600 -7.94504 -5.41470 -0.60403 -0.22779 1.42388 1.43994 1.48538 1.53967 1.63116 1.81460 2.04396 2.44508 2.80660 2.89532 3.05896 3.20429 3.24462 3.40160 3.43174 3.61144 3.67065 3.80327 3.93415 4.07315 4.09831 4.14098 4.22653 4.31696 4.42142 4.47649 4.55795 4.60974 4.74151 4.75109 4.79935 4.83550 4.87712 4.95440 4.99934 5.05335 5.21185 5.27157 5.35860 5.39348 5.54541 5.59641 6.24485 6.28066 6.35312 6.48779 6.65191 6.94132 7.03167 7.69561 8.23324 9.10472 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.003027 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.200645 B = 9247.430046 C =10333.118314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.208 4.208 3 C -0.042 4.042 4 C 0.150 3.850 5 N -0.483 5.483 6 C 0.130 3.870 7 C -0.182 4.182 8 C 0.555 3.445 9 O -0.585 6.585 10 N -0.592 5.592 11 C 0.080 3.920 12 C -0.116 4.116 13 C 0.087 3.913 14 H 0.054 0.946 15 O -0.381 6.381 16 C 0.052 3.948 17 C 0.143 3.857 18 N -0.602 5.602 19 C -0.266 4.266 20 H 0.066 0.934 21 C -0.045 4.045 22 N -0.930 5.930 23 Si 0.969 3.031 24 H -0.290 1.290 25 H -0.288 1.288 26 H -0.268 1.268 27 C 0.131 3.869 28 H 0.060 0.940 29 C 0.126 3.874 30 C -0.012 4.012 31 H 0.265 0.735 32 H 0.197 0.803 33 H 0.202 0.798 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.002 0.998 42 H 0.252 0.748 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.338 -4.929 20.840 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.208 4.208 3 C -0.044 4.044 4 C -0.008 4.008 5 N -0.190 5.190 6 C -0.027 4.027 7 C -0.187 4.187 8 C 0.344 3.656 9 O -0.466 6.466 10 N -0.323 5.323 11 C -0.040 4.040 12 C -0.154 4.154 13 C 0.028 3.972 14 H 0.072 0.928 15 O -0.300 6.300 16 C -0.026 4.026 17 C 0.018 3.982 18 N -0.325 5.325 19 C -0.396 4.396 20 H 0.083 0.917 21 C -0.241 4.241 22 N -0.576 5.576 23 Si 0.796 3.204 24 H -0.217 1.217 25 H -0.214 1.214 26 H -0.192 1.192 27 C 0.023 3.977 28 H 0.078 0.922 29 C 0.001 3.999 30 C -0.038 4.038 31 H 0.281 0.719 32 H 0.213 0.787 33 H 0.218 0.782 34 H 0.114 0.886 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.021 0.979 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.924 -4.539 21.189 24.267 hybrid contribution -0.369 0.361 -3.077 3.120 sum -11.292 -4.178 18.112 21.749 Atomic orbital electron populations 1.25878 0.96449 0.95667 0.95589 1.19814 0.91882 1.04379 1.04748 1.16909 0.89016 1.04289 0.94164 1.23652 0.89489 0.89898 0.97720 1.67919 1.08093 1.13605 1.29420 1.23919 1.02203 0.90715 0.85817 1.20668 0.94559 1.08672 0.94831 1.18545 0.81061 0.79222 0.86762 1.90782 1.71461 1.41970 1.42373 1.48175 1.17669 1.48906 1.17536 1.22898 1.01198 0.90952 0.88998 1.21863 0.98820 0.97534 0.97172 1.22347 0.85387 0.94766 0.94721 0.92838 1.87750 1.23753 1.81912 1.36565 1.23084 0.91446 0.99458 0.88577 1.21240 0.87015 0.93862 0.96096 1.44505 1.07708 1.77304 1.02977 1.19444 1.20113 1.17251 0.82792 0.91662 1.25788 1.01011 0.95824 1.01518 1.70170 1.36587 1.18322 1.32487 0.85250 0.76751 0.78488 0.79870 1.21728 1.21397 1.19237 1.21745 0.92547 0.93724 0.89666 0.92154 1.21827 0.93509 0.99361 0.85231 1.21776 0.92212 0.90872 0.98950 0.71946 0.78661 0.78230 0.88613 0.85298 0.86524 0.89629 0.87228 0.93635 0.91432 0.97950 0.93881 0.92444 0.93541 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 19.25 74.32 1.43 0.03 16 2 C -0.21 -3.62 13.27 30.01 0.40 -3.22 16 3 C -0.04 -0.82 5.73 -21.35 -0.12 -0.94 16 4 C 0.15 2.45 10.91 85.05 0.93 3.38 16 5 N -0.48 -8.97 10.33 -195.13 -2.02 -10.99 16 6 C 0.13 2.56 8.63 85.04 0.73 3.30 16 7 C -0.18 -4.65 5.54 -20.02 -0.11 -4.76 16 8 C 0.56 18.91 7.48 86.79 0.65 19.55 16 9 O -0.58 -25.68 16.22 -3.87 -0.06 -25.75 16 10 N -0.59 -19.02 2.96 -822.29 -2.43 -21.45 16 11 C 0.08 1.77 4.77 86.34 0.41 2.18 16 12 C -0.12 -2.59 5.75 30.54 0.18 -2.42 16 13 C 0.09 2.82 2.81 30.55 0.09 2.91 16 14 H 0.05 1.79 8.11 -2.38 -0.02 1.77 16 15 O -0.38 -12.79 9.71 -148.98 -1.45 -14.23 16 16 C 0.05 1.88 6.96 71.92 0.50 2.38 16 17 C 0.14 6.75 4.93 86.19 0.43 7.17 16 18 N -0.60 -29.96 2.71 -673.17 -1.82 -31.78 16 19 C -0.27 -14.69 9.69 84.03 0.81 -13.88 16 20 H 0.07 3.56 7.88 -2.91 -0.02 3.53 16 21 C -0.05 -2.53 4.97 84.86 0.42 -2.11 16 22 N -0.93 -54.78 11.12 21.65 0.24 -54.54 16 23 Si 0.97 45.06 29.58 68.60 2.03 47.09 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 27 C 0.13 5.43 2.96 44.95 0.13 5.57 16 28 H 0.06 2.62 7.99 -2.38 -0.02 2.60 16 29 C 0.13 5.23 5.66 86.43 0.49 5.72 16 30 C -0.01 -0.29 9.46 22.99 0.22 -0.07 16 31 H 0.26 0.59 7.80 -4.42 -0.03 0.56 16 32 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.20 3.15 5.28 -2.91 -0.02 3.13 16 34 H 0.10 1.99 8.00 -2.39 -0.02 1.97 16 35 H 0.13 2.16 3.55 -3.31 -0.01 2.15 16 36 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 39 H 0.05 1.62 8.13 -2.38 -0.02 1.60 16 40 H 0.07 3.57 6.12 -2.38 -0.01 3.55 16 41 H 0.00 0.12 7.21 -2.39 -0.02 0.11 16 42 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.06 2.54 6.69 -2.39 -0.02 2.53 16 44 H 0.05 2.34 7.00 -2.39 -0.02 2.32 16 45 H 0.14 3.56 8.00 -2.91 -0.02 3.54 16 Total: -1.00 -74.69 365.30 3.09 -71.60 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.02 Total: 15.25 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 7.58 Total: 24.80 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -6.03 Total: -118.76 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.51 Total: -39.98 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -74.69 3.09 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074335521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.729 kcal (2) G-P(sol) polarization free energy of solvation -74.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.39 seconds