Wall clock time and date at job start Sat Apr 11 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47325 * 2 1 4 4 H 1.08996 * 109.46942 * 54.99886 * 3 2 1 5 5 O 1.42900 * 109.46991 * 295.00225 * 3 2 1 6 6 C 1.53001 * 109.47343 * 175.00482 * 3 2 1 7 7 N 1.46492 * 109.47440 * 181.15866 * 6 3 2 8 8 C 1.46496 * 120.00204 * 65.04630 * 7 6 3 9 9 C 1.50706 * 109.47097 * 83.43379 * 8 7 6 10 10 C 1.38239 * 119.99568 * 275.28369 * 9 8 7 11 11 C 1.38234 * 119.99614 * 179.76656 * 10 9 8 12 12 C 1.38243 * 119.99933 * 0.48226 * 11 10 9 13 13 C 1.38233 * 120.00016 * 359.79332 * 12 11 10 14 14 C 1.38230 * 119.99788 * 95.55537 * 9 8 7 15 15 S 1.65606 * 119.99928 * 245.05440 * 7 6 3 16 16 O 1.42099 * 104.27462 * 206.06575 * 15 7 6 17 17 O 1.42092 * 104.27433 * 333.92413 * 15 7 6 18 18 C 1.81392 * 104.45223 * 89.99676 * 15 7 6 19 19 C 1.53001 * 109.47235 * 179.97438 * 18 15 7 20 20 C 1.50705 * 109.46910 * 179.97438 * 19 18 15 21 21 H 1.07994 * 120.00026 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99732 * 179.97438 * 20 19 18 23 23 N 1.31524 * 119.99754 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00183 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47376 * 90.00316 * 24 22 20 26 26 H 1.48501 * 109.47331 * 210.00388 * 24 22 20 27 27 H 1.48503 * 109.47226 * 330.00362 * 24 22 20 28 28 H 1.09004 * 109.46524 * 299.99812 * 1 2 3 29 29 H 1.09002 * 109.46909 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47193 * 60.00011 * 1 2 3 31 31 H 1.09007 * 109.47208 * 120.00282 * 2 1 3 32 32 H 1.08999 * 109.46861 * 239.99898 * 2 1 3 33 33 H 0.96707 * 114.00218 * 296.08161 * 5 3 2 34 34 H 1.09003 * 109.46473 * 301.15716 * 6 3 2 35 35 H 1.09000 * 109.47390 * 61.15195 * 6 3 2 36 36 H 1.09000 * 109.47496 * 203.43245 * 8 7 6 37 37 H 1.09004 * 109.47360 * 323.43012 * 8 7 6 38 38 H 1.07995 * 119.99918 * 359.97438 * 10 9 8 39 39 H 1.07997 * 119.99703 * 180.25063 * 11 10 9 40 40 H 1.07996 * 119.99660 * 179.77363 * 12 11 10 41 41 H 1.07991 * 120.00195 * 179.97438 * 13 12 11 42 42 H 1.07990 * 120.00436 * 0.02562 * 14 9 8 43 43 H 1.09004 * 109.46975 * 300.00139 * 18 15 7 44 44 H 1.09002 * 109.47712 * 60.00041 * 18 15 7 45 45 H 1.08991 * 109.46927 * 300.00079 * 19 18 15 46 46 H 1.09003 * 109.46971 * 59.99940 * 19 18 15 47 47 H 0.97000 * 119.99854 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 3.5649 1.4443 0.1256 7 7 4.0510 2.8259 0.1534 8 6 3.6966 3.7048 1.2706 9 6 4.6440 3.4655 2.4181 10 6 4.4006 2.4404 3.3130 11 6 5.2721 2.2179 4.3627 12 6 6.3816 3.0267 4.5231 13 6 6.6219 4.0554 3.6315 14 6 5.7531 4.2746 2.5787 15 16 5.0009 3.3945 -1.0782 16 8 5.7609 4.4367 -0.4821 17 8 5.6324 2.2327 -1.5984 18 6 3.8247 4.0724 -2.2812 19 6 4.5896 4.6360 -3.4804 20 6 3.6123 5.1987 -4.4802 21 1 2.5518 5.1587 -4.2800 22 6 4.0722 5.7655 -5.6499 23 7 5.3637 5.8146 -5.8934 24 14 2.8610 6.4636 -6.8888 25 1 2.6118 7.8956 -6.5847 26 1 3.4250 6.3390 -8.2568 27 1 1.5831 5.7112 -6.8098 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.0622 1.6905 -2.0099 34 1 3.8541 0.9387 1.0470 35 1 4.0004 0.9230 -0.7269 36 1 3.7677 4.7446 0.9517 37 1 2.6767 3.4920 1.5911 38 1 3.5314 1.8114 3.1901 39 1 5.0841 1.4145 5.0595 40 1 7.0605 2.8552 5.3453 41 1 7.4884 4.6875 3.7571 42 1 5.9407 5.0784 1.8824 43 1 3.1526 3.2826 -2.6170 44 1 3.2450 4.8684 -1.8138 45 1 5.2613 5.4258 -3.1443 46 1 5.1696 3.8403 -3.9480 47 1 5.6873 6.2131 -6.7165 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128537015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:02 Heat of formation + Delta-G solvation = -137.126612 kcal Electronic energy + Delta-G solvation = -28760.636443 eV Core-core repulsion = 24840.929042 eV Total energy + Delta-G solvation = -3919.707400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.33378 -39.20389 -38.16467 -37.03125 -36.48628 -35.86202 -33.67505 -33.08284 -32.40786 -31.72121 -29.35103 -27.57227 -26.80327 -24.21603 -23.43021 -23.30817 -22.50769 -21.88010 -19.84252 -19.09569 -18.36612 -17.88950 -17.49508 -17.07113 -16.95365 -16.59720 -16.45048 -16.09312 -15.95362 -15.73465 -15.52120 -15.04519 -14.48566 -14.31405 -14.22494 -14.20669 -13.71596 -13.63263 -13.36856 -13.29238 -13.18523 -12.99851 -12.97838 -12.90623 -12.75619 -12.61535 -12.35402 -12.30193 -12.20065 -12.08404 -11.79471 -11.75469 -11.72822 -11.67012 -11.21073 -10.88047 -10.64000 -9.86629 -9.75489 -9.64703 -8.25241 -6.38868 -0.71029 0.44558 0.55858 1.40955 1.42605 1.53990 1.76748 2.38651 2.86386 2.94547 3.08012 3.17625 3.48908 3.68577 3.82947 3.92612 4.04187 4.12399 4.14598 4.17850 4.22343 4.28097 4.34507 4.41793 4.58517 4.64930 4.74342 4.75992 4.77398 4.84549 4.86112 4.96638 5.08165 5.15777 5.19884 5.24351 5.27316 5.30416 5.42868 5.50772 5.59264 5.61730 5.67881 5.69889 5.78649 6.07896 6.17831 6.74859 6.82526 7.31204 8.87022 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003765 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.874641 B = 7435.081595 C = 9307.968044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.152 4.152 3 C 0.092 3.908 4 H 0.115 0.885 5 O -0.571 6.571 6 C 0.077 3.923 7 N -0.978 5.978 8 C 0.160 3.840 9 C -0.120 4.120 10 C -0.105 4.105 11 C -0.129 4.129 12 C -0.124 4.124 13 C -0.141 4.141 14 C -0.125 4.125 15 S 2.605 3.395 16 O -0.988 6.988 17 O -0.997 6.997 18 C -0.579 4.579 19 C 0.023 3.977 20 C -0.534 4.534 21 H 0.075 0.925 22 C -0.004 4.004 23 N -0.935 5.935 24 Si 0.972 3.028 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.257 1.257 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.378 0.622 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.112 0.888 43 H 0.143 0.857 44 H 0.134 0.866 45 H 0.002 0.998 46 H 0.004 0.996 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -11.866 21.447 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.190 4.190 3 C 0.031 3.969 4 H 0.132 0.868 5 O -0.378 6.378 6 C -0.048 4.048 7 N -0.814 5.814 8 C 0.036 3.964 9 C -0.122 4.122 10 C -0.124 4.124 11 C -0.147 4.147 12 C -0.142 4.142 13 C -0.159 4.159 14 C -0.144 4.144 15 S 2.704 3.296 16 O -0.978 6.978 17 O -0.987 6.987 18 C -0.711 4.711 19 C -0.016 4.016 20 C -0.573 4.573 21 H 0.093 0.907 22 C -0.202 4.202 23 N -0.575 5.575 24 Si 0.796 3.204 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.181 1.181 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.227 0.773 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.130 0.870 43 H 0.161 0.839 44 H 0.152 0.848 45 H 0.020 0.980 46 H 0.023 0.977 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.505 -11.505 21.722 25.701 hybrid contribution -0.011 0.515 -1.606 1.687 sum -7.516 -10.990 20.115 24.122 Atomic orbital electron populations 1.21662 0.95040 1.01681 1.01960 1.22165 0.97098 0.95894 1.03875 1.22493 0.92067 0.94126 0.88181 0.86771 1.86632 1.73653 1.60949 1.16579 1.22380 0.95756 0.81235 1.05459 1.57264 1.69872 1.20167 1.34134 1.20325 0.98675 0.93697 0.83694 1.20384 0.97081 0.97245 0.97441 1.21336 1.00396 0.96595 0.94044 1.21507 0.94612 1.00067 0.98532 1.21495 0.98285 0.95034 0.99360 1.21404 0.99753 0.99307 0.95463 1.21447 0.95018 1.00126 0.97769 1.04973 0.76116 0.73597 0.74955 1.93482 1.69020 1.59769 1.75549 1.93472 1.74413 1.49642 1.81178 1.30367 1.15401 1.12777 1.12537 1.18804 0.95475 0.95264 0.92052 1.21494 0.93868 1.38761 1.03196 0.90706 1.26107 0.97219 0.96247 1.00622 1.70110 1.14970 1.45708 1.26708 0.85333 0.78870 0.78863 0.77330 1.19713 1.20796 1.18093 0.92355 0.92211 0.93434 0.89107 0.91427 0.77273 0.87843 0.89352 0.89970 0.86243 0.83385 0.83314 0.84026 0.85500 0.86980 0.83884 0.84771 0.97992 0.97749 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.81 71.98 0.71 -1.19 16 2 C -0.15 -1.85 5.63 30.59 0.17 -1.68 16 3 C 0.09 1.42 2.98 30.59 0.09 1.52 16 4 H 0.11 1.50 6.84 -2.39 -0.02 1.48 16 5 O -0.57 -11.90 11.72 -148.98 -1.75 -13.65 16 6 C 0.08 1.47 5.41 86.38 0.47 1.94 16 7 N -0.98 -24.69 2.69 -519.85 -1.40 -26.09 16 8 C 0.16 3.53 5.31 85.64 0.45 3.98 16 9 C -0.12 -2.78 5.45 -19.86 -0.11 -2.89 16 10 C -0.11 -1.84 9.20 22.27 0.20 -1.64 16 11 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 12 C -0.12 -2.30 10.05 22.27 0.22 -2.07 16 13 C -0.14 -3.32 10.05 22.27 0.22 -3.09 16 14 C -0.12 -3.44 9.20 22.27 0.20 -3.24 16 15 S 2.61 95.61 5.37 -56.49 -0.30 95.31 16 16 O -0.99 -41.65 15.49 -127.65 -1.98 -43.62 16 17 O -1.00 -41.93 16.52 -127.65 -2.11 -44.04 16 18 C -0.58 -22.48 6.00 71.98 0.43 -22.05 16 19 C 0.02 1.22 4.98 29.85 0.15 1.37 16 20 C -0.53 -29.93 9.11 25.60 0.23 -29.69 16 21 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 22 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 23 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 24 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 27 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.77 7.82 -2.39 -0.02 0.75 16 31 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.38 7.04 8.05 -74.05 -0.60 6.45 16 34 H 0.10 1.53 7.42 -2.39 -0.02 1.51 16 35 H 0.09 1.92 6.79 -2.39 -0.02 1.90 16 36 H 0.08 1.97 7.46 -2.39 -0.02 1.95 16 37 H 0.12 1.78 6.67 -2.38 -0.02 1.76 16 38 H 0.15 1.64 7.87 -2.91 -0.02 1.62 16 39 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.13 2.64 8.06 -2.92 -0.02 2.61 16 42 H 0.11 3.57 7.09 -2.92 -0.02 3.54 16 43 H 0.14 4.84 6.08 -2.39 -0.01 4.83 16 44 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 45 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 47 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -78.02 393.94 -0.72 -78.74 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.36 Total: 25.13 kcal Atomic # 6 Polarization: -64.52 SS G_CDS: 4.14 Total: -60.38 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -1.12 Total: -83.25 kcal Atomic # 8 Polarization: -95.48 SS G_CDS: -5.83 Total: -101.32 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 95.61 SS G_CDS: -0.30 Total: 95.31 kcal Total: -78.02 -0.72 -78.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128537015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.387 kcal (2) G-P(sol) polarization free energy of solvation -78.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds